Prupe.1G233000_v2.0.a1

membrane protein YuiD-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010674
Physical Location & Seq
Reverse (-)
24770634 .. 24772635
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G233000.1

Sequence Viewer

Length: 495 bp
ATGGTTGAGGTGGCGGCATCTTCGACATCGTCGTCTTCAATCTTCACCAACTACCCTCTTCTCTCTGCTGTTGTAGCTTTCGCCATTGCCCAATTCATCAAGTTCTTCACCTCCTGGTACAAGGAAAGACGATGGGATTTCAAGCAACTTGTTGGATCCGGTGGAATGCCGTCTTCTCATTCTGCGACTGTTACTGCGGTTGCTGCAGCCATTGGGTTCCAAGAAGGCGTTGGCGGACCAATCTTTGCAATTGGATTGATCTTAGCATGTGTTGTGATGTATGATGCAACTGGTGTGAGATTACAGGCTGGACGCCAAGCAGAGGTTTTGAATCAAATTGTGTATGAACTTCCTGCTGAACATCCTCTGGCAGAGAGCAGACCACTACGTGAACTTCTTGGACACACACCCCCTCAGGTTATTGTTGGTGGGTTGCTTGGAATCGTCACAGCAGCCATTGGCTATTTGATTACTGTAACAATCAGTCATACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

165

Amino Acids

17.38

Weight (kDa)

6.4

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 31
AciI CCGC 3 cut(s) 14, 197, 234
AclWI GGATC 2 cut(s) 150, 163
AcyI GRCGYC 1 cut(s) 313
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 3 cut(s) 39, 142, 331
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 1 cut(s) 77
AluI AGCT 1 cut(s) 77
AlwI GGATC 2 cut(s) 150, 163
ApeKI GCWGC 3 cut(s) 203, 206, 452
AspS9I GGNCC 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 37, 100
AvaII GGWCC 1 cut(s) 236
AxyI CCTNAGG 1 cut(s) 414
BamHI GGATCC 1 cut(s) 155
BbsI GAAGAC 2 cut(s) 27, 165
BbvI GCAGC 3 cut(s) 190, 218, 464
BccI CCATC 1 cut(s) 126
BceAI ACGGC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 115
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 4 cut(s) 15, 204, 207, 453
BlsI GCNGC 4 cut(s) 16, 205, 208, 454
Bme1390I CCNGG 1 cut(s) 115
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 1 cut(s) 236
BmiI GGNNCC 2 cut(s) 157, 218
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 2 cut(s) 26, 274
BpiI GAAGAC 2 cut(s) 27, 165
BsaAI YACGTR 1 cut(s) 389
BsaHI GRCGYC 1 cut(s) 313
BsaWI WCCGGW 1 cut(s) 158
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse1I ACTGG 1 cut(s) 295
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 84
BseBI CCWGG 1 cut(s) 115
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 3 cut(s) 190, 218, 464
BsiSI CCGG 1 cut(s) 159
BslI CCNNNNNNNGG 1 cut(s) 322
BsmI GAATGC 1 cut(s) 171
Bsp143I GATC 2 cut(s) 155, 258
BspACI CCGC 3 cut(s) 14, 197, 234
BspCNI CTCAG 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 157, 218
BspMAI CTGCAG 1 cut(s) 208
BspPI GGATC 2 cut(s) 150, 163
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 1 cut(s) 295
BssMI GATC 2 cut(s) 155, 258
BssNI GRCGYC 1 cut(s) 313
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 190, 475
Bst6I CTCTTC 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 313
BstBAI YACGTR 1 cut(s) 389
BstDEI CTNAG 2 cut(s) 262, 414
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 2 cut(s) 158, 261
BstMBI GATC 2 cut(s) 155, 258
BstMWI GCNNNNNNNGC 2 cut(s) 74, 203
BstNI CCWGG 1 cut(s) 115
BstNSI RCATGY 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 3 cut(s) 190, 218, 464
BstV2I GAAGAC 2 cut(s) 27, 165
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
Bsu36I CCTNAGG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 361
Cfr13I GGNCC 1 cut(s) 236
CseI GACGC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 267, 492
CviJI RGCY 5 cut(s) 77, 209, 308, 455, 462
CviKI_1 RGCY 5 cut(s) 77, 209, 308, 455, 462
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 262, 414
DpnI GATC 2 cut(s) 157, 260
DpnII GATC 2 cut(s) 155, 258
DraIII CACNNNGTG 1 cut(s) 389
DrdI GACNNNNNNGTC 1 cut(s) 31
DseDI GACNNNNNNGTC 1 cut(s) 31
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
EciI GGCGGA 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 236
Eco81I CCTNAGG 1 cut(s) 414
EcoRII CCWGG 1 cut(s) 113
FaeI CATG 2 cut(s) 270, 495
FaiI YATR 5 cut(s) 268, 282, 345, 489, 493
FatI CATG 2 cut(s) 266, 491
Fnu4HI GCNGC 4 cut(s) 15, 204, 207, 453
FokI GGATG 1 cut(s) 348
Fsp4HI GCNGC 4 cut(s) 15, 204, 207, 453
GluI GCNGC 4 cut(s) 15, 204, 207, 453
HapII CCGG 1 cut(s) 159
HgaI GACGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 2 cut(s) 270, 495
HinfI GANTC 2 cut(s) 331, 441
HpaII CCGG 1 cut(s) 159
HphI GGTGA 2 cut(s) 37, 100
Hpy166II GTNNAC 1 cut(s) 392
Hpy8I GTNNAC 1 cut(s) 392
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 2 cut(s) 190, 475
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 3 cut(s) 206, 248, 287
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 203
HpyF3I CTNAG 2 cut(s) 262, 414
HpySE526I ACGT 1 cut(s) 388
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 2 cut(s) 270, 495
Kzo9I GATC 2 cut(s) 155, 258
LpnPI CCDG 9 cut(s) 100, 127, 172, 276, 290, 294, 353, 366, 401
Lsp1109I GCAGC 3 cut(s) 190, 218, 464
LweI GCATC 2 cut(s) 26, 274
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 3 cut(s) 190, 445, 475
MalI GATC 2 cut(s) 157, 260
MboI GATC 2 cut(s) 155, 258
MboII GAAGA 6 cut(s) 12, 27, 34, 50, 97, 165
MfeI CAATTG 1 cut(s) 249
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 92, 249, 336
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 66, 121, 316, 375, 423
MspI CCGG 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 171
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 74, 203
NdeII GATC 2 cut(s) 155, 258
NlaIII CATG 2 cut(s) 270, 495
NlaIV GGNNCC 2 cut(s) 157, 218
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 270
PcsI WCGNNNNNNNCGW 1 cut(s) 29
PctI GAATGC 1 cut(s) 171
PfeI GAWTC 2 cut(s) 331, 441
PflFI GACNNNGTC 1 cut(s) 28
PkrI GCNGC 4 cut(s) 16, 205, 208, 454
Ppu21I YACGTR 1 cut(s) 389
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 157, 218
PspPI GGNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 208
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 28
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SatI GCNGC 4 cut(s) 15, 204, 207, 453
Sau3AI GATC 2 cut(s) 155, 258
Sau96I GGNCC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 115
SetI ASST 6 cut(s) 12, 79, 113, 327, 391, 420
SfaNI GCATC 2 cut(s) 26, 274
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 236
Sse9I AATT 3 cut(s) 92, 249, 336
SsiI CCGC 3 cut(s) 14, 197, 234
StyD4I CCNGG 1 cut(s) 113
TaaI ACNGT 2 cut(s) 190, 475
TaiI ACGT 1 cut(s) 391
TaqI TCGA 1 cut(s) 23
TasI AATT 3 cut(s) 92, 249, 336
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 2 cut(s) 331, 441
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 203, 206, 452
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 85, 360
Tth111I GACNNNGTC 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 236
XceI RCATGY 1 cut(s) 270
XcmI CCANNNNNNNNNTGG 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.