Rh4DG308400

membrane protein YuiD-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0010674
Physical Location & Seq
Reverse (-)
53047868 .. 53050401
2534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG308400.1

Sequence Viewer

Length: 366 bp
ATGGGTGAGGTGGCGGCAGCTTCATCGACCTCAATCTTCGCCAACTACCCTCTTCTCTCTTCTCTAATCGCTTTCGCAACAGCCCAGCTCATCAAGCTCTTCACCACCTGGTACAAGGAAAGAAGATGGGATATTAAGCAACTTATTGGATCCGGCGGAATGCCATCATCTCATTCTGCGACTGTTACTGCTATTGCTGCAGCCATTGGGTTTCAAGAGGGCGTTGGTGGATCACTCTTTGCAATTGCACTGATCTTAGCATGCGTTGTAAGATCCCTCGCTTCATTTGGTATCGTTTTGCAAAAAGCATTTGGCCTTCCATTGTTATCTTTGAAGACATCATTTGGTGCCTATATAACATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF212

Protein Analysis

121

Amino Acids

12.65

Weight (kDa)

9.58

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF212 PF02681 14 - 90 1.7e-26 Divergent PAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010674)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G24350 AT1G67600
fragaria_vesca FvH4_4g24302
malus_domestica MD13G1113100.v1.1 MD16G1112000.v1.1
prunus_persica Prupe.1G233000_v2.0.a1
pyrus_communis pycom13g09850 pycom16g09500
rosa_chinensis RchiOBHm_Chr4g0431101
rosa_laevigata RLG00000006925
rosa_multiflora Rmu_co8474717.1_g000001 Rmu_sc0010203.1_g000012
rosa_roxburghii Rroxscaffold_5G00372690
rosa_rugosa Rorug04G0248000
rosa_samantha Rh4DG308400
rosa_wichuraiana Rw4G026470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 347
AciI CCGC 2 cut(s) 14, 156
AclWI GGATC 4 cut(s) 144, 157, 238, 267
AfaI GTAC 1 cut(s) 113
AgsI TTSAA 2 cut(s) 215, 334
AjnI CCWGG 1 cut(s) 107
AluBI AGCT 3 cut(s) 20, 88, 97
AluI AGCT 3 cut(s) 20, 88, 97
AlwI GGATC 4 cut(s) 144, 157, 238, 267
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 3 cut(s) 17, 197, 200
AsuHPI GGTGA 2 cut(s) 17, 94
BamHI GGATCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 347
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 3 cut(s) 29, 184, 212
BccI CCATC 2 cut(s) 120, 172
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 1 cut(s) 109
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 4 cut(s) 15, 18, 198, 201
BlsI GCNGC 4 cut(s) 16, 19, 199, 202
Bme1390I CCNGG 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 151, 349
BmrFI CCNGG 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 341
BseBI CCWGG 1 cut(s) 109
BseXI GCAGC 3 cut(s) 29, 184, 212
BseYI CCCAGC 1 cut(s) 84
BshFI GGCC 1 cut(s) 315
BshNI GGYRCC 1 cut(s) 347
BsiSI CCGG 1 cut(s) 153
BsmI GAATGC 1 cut(s) 165
BsnI GGCC 1 cut(s) 315
Bsp143I GATC 4 cut(s) 149, 230, 252, 272
BspACI CCGC 2 cut(s) 14, 156
BspANI GGCC 1 cut(s) 315
BspLI GGNNCC 2 cut(s) 151, 349
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 4 cut(s) 144, 157, 238, 267
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 347
BssMI GATC 4 cut(s) 149, 230, 252, 272
Bst2UI CCWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 184
Bst6I CTCTTC 3 cut(s) 57, 64, 104
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 256
BstKTI GATC 4 cut(s) 152, 233, 255, 275
BstMBI GATC 4 cut(s) 149, 230, 252, 272
BstMWI GCNNNNNNNGC 2 cut(s) 94, 197
BstNI CCWGG 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 29, 184, 212
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 2 cut(s) 149, 272
BstYI RGATCY 2 cut(s) 149, 272
BsuRI GGCC 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 107
Csp6I GTAC 1 cut(s) 112
CviAII CATG 1 cut(s) 261
CviJI RGCY 6 cut(s) 20, 83, 88, 97, 203, 315
CviKI_1 RGCY 6 cut(s) 20, 83, 88, 97, 203, 315
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 1 cut(s) 256
DpnI GATC 4 cut(s) 151, 232, 254, 274
DpnII GATC 4 cut(s) 149, 230, 252, 272
Eam1104I CTCTTC 3 cut(s) 57, 64, 104
EarI CTCTTC 3 cut(s) 57, 64, 104
EciI GGCGGA 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 107
FaeI CATG 1 cut(s) 264
FaiI YATR 3 cut(s) 262, 354, 356
FatI CATG 1 cut(s) 260
Fnu4HI GCNGC 4 cut(s) 15, 18, 198, 201
Fsp4HI GCNGC 4 cut(s) 15, 18, 198, 201
GluI GCNGC 4 cut(s) 15, 18, 198, 201
GsaI CCCAGC 1 cut(s) 88
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 153
Hin1II CATG 1 cut(s) 264
HpaII CCGG 1 cut(s) 153
HphI GGTGA 2 cut(s) 17, 94
Hpy188III TCNNGA 1 cut(s) 215
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 200, 242, 248, 301
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 197
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 1 cut(s) 264
Kzo9I GATC 4 cut(s) 149, 230, 252, 272
LguI GCTCTTC 1 cut(s) 104
LpnPI CCDG 4 cut(s) 94, 98, 121, 166
Lsp1109I GCAGC 3 cut(s) 29, 184, 212
MabI ACCWGGT 1 cut(s) 107
MaeIII GTNAC 1 cut(s) 184
MalI GATC 4 cut(s) 151, 232, 254, 274
MboI GATC 4 cut(s) 149, 230, 252, 272
MboII GAAGA 6 cut(s) 28, 44, 51, 91, 135, 346
MfeI CAATTG 1 cut(s) 243
MflI RGATCY 2 cut(s) 149, 272
MluCI AATT 1 cut(s) 243
MnlI CCTC 4 cut(s) 40, 60, 211, 287
MseI TTAA 2 cut(s) 135, 364
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 109
MunI CAATTG 1 cut(s) 243
Mva1269I GAATGC 1 cut(s) 165
MvaI CCWGG 1 cut(s) 109
MwoI GCNNNNNNNGC 2 cut(s) 94, 197
NdeII GATC 4 cut(s) 149, 230, 252, 272
NlaIII CATG 1 cut(s) 264
NlaIV GGNNCC 2 cut(s) 151, 349
NspI RCATGY 1 cut(s) 264
PaeI GCATGC 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 1 cut(s) 165
PkrI GCNGC 4 cut(s) 16, 19, 199, 202
Psp6I CCWGG 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 2 cut(s) 151, 349
PstI CTGCAG 1 cut(s) 202
PsuI RGATCY 2 cut(s) 149, 272
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 2 cut(s) 135, 364
SatI GCNGC 4 cut(s) 15, 18, 198, 201
Sau3AI GATC 4 cut(s) 149, 230, 252, 272
ScrFI CCNGG 1 cut(s) 109
SetI ASST 6 cut(s) 12, 22, 32, 90, 99, 110
SexAI ACCWGGT 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 198
SgeI CNNG 9 cut(s) 97, 106, 120, 121, 127, 165, 227, 273, 290
SphI GCATGC 1 cut(s) 264
Sse9I AATT 1 cut(s) 243
SsiI CCGC 2 cut(s) 14, 156
StyD4I CCNGG 1 cut(s) 107
TaaI ACNGT 1 cut(s) 184
TaqI TCGA 1 cut(s) 26
TasI AATT 1 cut(s) 243
TauI GCSGC 1 cut(s) 17
Tru1I TTAA 2 cut(s) 135, 364
Tru9I TTAA 2 cut(s) 135, 364
TscAI CASTG 1 cut(s) 255
TseI GCWGC 3 cut(s) 17, 197, 200
TspDTI ATGAA 2 cut(s) 12, 273
TspRI CASTG 1 cut(s) 255
XceI RCATGY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.