Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008348

Physical Location & Seq

Genomic Coordinates Forward (+)

8804489 .. 8806361

Gene Structure 1873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25054.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAGACTCCCCGTCACCGTCAAAGCCACTAAGCCGTCGTTTCTCGTCATTTGGATCCGATACTCCTCCGCCGCGTCGTCGCCGACAGTCTCCTTGAATCCAAGTGGACGATTACAGCAAACTCTCGCAGGATCTGTGGAAGTGAAAGGAAAATCTCTGCACTCCGGTAAGTTCTCGACGGTGAAGCTAAATCCGGAGATCGCCGGAGCTGGTAGGTTCTTCGAGTTTCGATCCAGATTCATCCCTGCGTCGATTGAATTTGCTCAGGAATCGCCTCTTTGCACGACGCTGTTGAAAGATGAGCTCAAAATCCGAACCGTTGAGCATTTGTTATCAGCTCTTGAGGCGAAGGGAGTTGATAATTGCAGGATTCAAATCGAGAGCGAAAGTTCCGATGATCGAGAAGTCGAGGTCCCTATTTTTGATGGATCAGCTAAAGAATGGGTCGATGCGATACAAGGAGTTGGCATAAACGCGGCTCAAAACCATGATGGTGAAAGTGTAGAGAAGATGGTCGCACATGTGAACAAGCCTGTGTATGTTTGCAAGAACGATACTTTTGTTGCTGCATTTCCGGCTCTAGAGACTCGGATCACTTGTGGTATCGACTTCCCACAGGTGCCTGCTATAGGCTGCCAATGGTTTTCTTGGAGACCTATCCATGAGTCTTCTTTTGCAAAGGATATCGCATCATCAAGAACCTTCTGTGTCTATGAAGAGGTGGAGCGTATGCGTGAAGCAGGGCTCATTAAAGGAGGTTCTCTGGATAACGCCATAGTTTGTAGCGCTGAGCATGGATGGATGAATCCTCCTCTGCGGTTTGATGATGAAGCATGTCGACATAAGATTCTTGACCTAATCGGTGACCTCTCCCTTGTTTCACGGGGCGGAAATGGAGGACTCCCCGTGGCTCACATAGTCGCATATAAGGCGGGTCATGCACTGCACACTGACTTAGCACGTCACCTTACCATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008759 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxC

Protein Analysis

326

Amino Acids

35.72

Weight (kDa)

6.14

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LpxC	PF03331	39 - 324	2.5e-84	UDP-3-O-acyl N-acetylglycosamine deacetylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24793 AT1G24793 AT1G25054 AT1G25145 AT1G25210 AT1G25210
fragaria_vesca	FvH4_4g33550
malus_domestica	MD13G1020300.v1.1
prunus_persica	Prupe.1G333400_v2.0.a1
pyrus_communis	pycom13g01710
rosa_chinensis	RchiOBHm_Chr7g0235121
rosa_laevigata	RLG00000001181
rosa_multiflora	Rmu_sc0002239.1_g000018 Rmu_sc0028222.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226270
rosa_rugosa	Rorug07G0287700 Rorug07G0287700 Rorug07G0287800
rosa_samantha	Rh7AG442700 Rh7BG415300 Rh7CG463500 Rh7DG432400
rosa_wichuraiana	Rw7G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	838
AccII	CGCG	2 cut(s)	74, 476
AccIII	TCCGGA	1 cut(s)	193
AciI	CCGC	6 cut(s)	69, 72, 476, 817, 888, 932
AclWI	GGATC	6 cut(s)	49, 62, 139, 225, 436, 599
AcsI	RAATTY	1 cut(s)	257
AfeI	AGCGCT	1 cut(s)	787
AfiI	CCNNNNNNNGG	2 cut(s)	629, 973
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	4 cut(s)	97, 257, 295, 374
AhdI	GACNNNNNGTC	1 cut(s)	11
AjiI	CACGTC	1 cut(s)	962
AluBI	AGCT	5 cut(s)	187, 209, 304, 338, 434
AluI	AGCT	5 cut(s)	187, 209, 304, 338, 434
Alw21I	GWGCWC	1 cut(s)	306
Alw26I	GTCTC	3 cut(s)	94, 578, 646
AlwI	GGATC	6 cut(s)	49, 62, 139, 225, 436, 599
AlwNI	CAGNNNCTG	1 cut(s)	134
Aor13HI	TCCGGA	1 cut(s)	193
Aor51HI	AGCGCT	1 cut(s)	787
ApeKI	GCWGC	2 cut(s)	566, 633
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	788
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	5 cut(s)	7, 193, 506, 875, 956
AvaII	GGWCC	1 cut(s)	412
BaeI	ACNNNNGTAYC	2 cut(s)	546, 579
BamHI	GGATCC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	619
BanII	GRGCYC	2 cut(s)	306, 747
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	553, 620
BccI	CCATC	4 cut(s)	419, 485, 505, 792
BceAI	ACGGC	1 cut(s)	19
BcoDI	GTCTC	3 cut(s)	94, 578, 646
BfaI	CTAG	1 cut(s)	581
BfmI	CTRYAG	1 cut(s)	627
BfoI	RGCGCY	1 cut(s)	789
BisI	GCNGC	4 cut(s)	72, 477, 567, 634
BlpI	GCTNAGC	1 cut(s)	789
BlsI	GCNGC	4 cut(s)	73, 478, 568, 635
Bme18I	GGWCC	1 cut(s)	412
BmeRI	GACNNNNNGTC	1 cut(s)	11
BmgBI	CACGTC	1 cut(s)	962
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	3 cut(s)	56, 414, 621
BmsI	GCATC	2 cut(s)	439, 698
BpiI	GAAGAC	1 cut(s)	660
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	362
BsaBI	GATNNNNATC	1 cut(s)	374
BsaI	GGTCTC	1 cut(s)	646
BsaJI	CCNNGG	2 cut(s)	906, 972
BsaWI	WCCGGW	2 cut(s)	164, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	629, 973
Bse8I	GATNNNNATC	1 cut(s)	374
BseAI	TCCGGA	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	906, 972
BseGI	GGATG	3 cut(s)	240, 803, 807
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	629, 973
BseMII	CTCAG	2 cut(s)	278, 780
BseRI	GAGGAG	2 cut(s)	55, 801
BseXI	GCAGC	2 cut(s)	553, 620
BsgI	GTGCAG	2 cut(s)	143, 929
Bsh1236I	CGCG	2 cut(s)	74, 476
BshNI	GGYRCC	1 cut(s)	619
BsiHKAI	GWGCWC	1 cut(s)	306
BsiSI	CCGG	4 cut(s)	165, 194, 204, 575
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	2 cut(s)	629, 973
BsmAI	GTCTC	3 cut(s)	94, 578, 646
BsmFI	GGGAC	1 cut(s)	398
Bso31I	GGTCTC	1 cut(s)	646
Bsp1286I	GDGCHC	2 cut(s)	306, 747
Bsp13I	TCCGGA	1 cut(s)	193
Bsp143I	GATC	7 cut(s)	54, 131, 198, 230, 397, 428, 591
Bsp1720I	GCTNAGC	1 cut(s)	789
Bsp19I	CCATGG	1 cut(s)	972
BspACI	CCGC	6 cut(s)	69, 72, 476, 817, 888, 932
BspCNI	CTCAG	2 cut(s)	277, 781
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	2 cut(s)	74, 476
BspLI	GGNNCC	3 cut(s)	56, 414, 621
BspPI	GGATC	6 cut(s)	49, 62, 139, 225, 436, 599
BspT107I	GGYRCC	1 cut(s)	619
BspTNI	GGTCTC	1 cut(s)	646
BssECI	CCNNGG	2 cut(s)	906, 972
BssMI	GATC	7 cut(s)	54, 131, 198, 230, 397, 428, 591
BssT1I	CCWWGG	1 cut(s)	972
Bst4CI	ACNGT	4 cut(s)	19, 88, 181, 319
Bst6I	CTCTTC	1 cut(s)	711
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	4 cut(s)	30, 264, 789, 955
BstDSI	CCRYGG	2 cut(s)	906, 972
BstEII	GGTNACC	1 cut(s)	863
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	3 cut(s)	240, 803, 807
BstFNI	CGCG	2 cut(s)	74, 476
BstH2I	RGCGCY	1 cut(s)	789
BstHHI	GCGC	1 cut(s)	788
BstKTI	GATC	7 cut(s)	57, 134, 201, 233, 400, 431, 594
BstMAI	GTCTC	3 cut(s)	94, 578, 646
BstMBI	GATC	7 cut(s)	54, 131, 198, 230, 397, 428, 591
BstMWI	GCNNNNNNNGC	4 cut(s)	344, 575, 929, 938
BstNSI	RCATGY	2 cut(s)	524, 837
BstPI	GGTNACC	1 cut(s)	863
BstSFI	CTRYAG	1 cut(s)	627
BstUI	CGCG	2 cut(s)	74, 476
BstV1I	GCAGC	2 cut(s)	553, 620
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	2 cut(s)	54, 131
BstYI	RGATCY	2 cut(s)	54, 131
BtgI	CCRYGG	2 cut(s)	906, 972
BtrI	CACGTC	1 cut(s)	962
BtsCI	GGATG	3 cut(s)	240, 803, 807
BtsI	GCAGTG	1 cut(s)	941
BtsIMutI	CAGTG	2 cut(s)	941, 948
Cac8I	GCNNGC	1 cut(s)	624
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	788
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	3 cut(s)	63, 237, 295
CviAII	CATG	7 cut(s)	488, 521, 662, 794, 834, 938, 973
DdeI	CTNAG	4 cut(s)	30, 264, 789, 955
DpnI	GATC	7 cut(s)	56, 133, 200, 232, 399, 430, 593
DpnII	GATC	7 cut(s)	54, 131, 198, 230, 397, 428, 591
DriI	GACNNNNNGTC	1 cut(s)	11
Eam1104I	CTCTTC	1 cut(s)	711
Eam1105I	GACNNNNNGTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	711
EciI	GGCGGA	2 cut(s)	58, 903
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	972
Eco24I	GRGCYC	2 cut(s)	306, 747
Eco31I	GGTCTC	1 cut(s)	646
Eco32I	GATATC	1 cut(s)	685
Eco47I	GGWCC	1 cut(s)	412
Eco47III	AGCGCT	1 cut(s)	787
Eco53kI	GAGCTC	1 cut(s)	304
Eco91I	GGTNACC	1 cut(s)	863
EcoICRI	GAGCTC	1 cut(s)	304
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoO109I	RGGNCCY	1 cut(s)	412
EcoO65I	GGTNACC	1 cut(s)	863
EcoRV	GATATC	1 cut(s)	685
EcoT14I	CCWWGG	1 cut(s)	972
EcoT38I	GRGCYC	2 cut(s)	306, 747
ErhI	CCWWGG	1 cut(s)	972
FaeI	CATG	7 cut(s)	491, 524, 665, 797, 837, 941, 976
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	7 cut(s)	487, 520, 661, 793, 833, 937, 972
FauI	CCCGC	1 cut(s)	925
FblI	GTMKAC	1 cut(s)	838
Fnu4HI	GCNGC	4 cut(s)	72, 477, 567, 634
FokI	GGATG	3 cut(s)	227, 810, 814
FriOI	GRGCYC	2 cut(s)	306, 747
Fsp4HI	GCNGC	4 cut(s)	72, 477, 567, 634
FspBI	CTAG	1 cut(s)	581
GlaI	GCGC	1 cut(s)	787
GluI	GCNGC	4 cut(s)	72, 477, 567, 634
HaeII	RGCGCY	1 cut(s)	789
HapII	CCGG	4 cut(s)	165, 194, 204, 575
HgaI	GACGC	3 cut(s)	63, 237, 295
HhaI	GCGC	1 cut(s)	788
Hin1II	CATG	7 cut(s)	491, 524, 665, 797, 837, 941, 976
Hin6I	GCGC	1 cut(s)	786
HinP1I	GCGC	1 cut(s)	786
HincII	GTYRAC	1 cut(s)	839
HindII	GTYRAC	1 cut(s)	839
HpaII	CCGG	4 cut(s)	165, 194, 204, 575
HphI	GGTGA	5 cut(s)	7, 193, 506, 875, 956
Hpy166II	GTNNAC	3 cut(s)	107, 526, 839
Hpy188I	TCNGA	4 cut(s)	59, 314, 394, 591
Hpy8I	GTNNAC	3 cut(s)	107, 526, 839
Hpy99I	CGWCG	6 cut(s)	40, 79, 82, 181, 253, 289
HpyAV	CCTTC	2 cut(s)	343, 712
HpyCH4III	ACNGT	4 cut(s)	19, 88, 181, 319
HpyCH4IV	ACGT	1 cut(s)	961
HpyCH4V	TGCA	8 cut(s)	160, 282, 366, 546, 569, 677, 941, 946
HpyF10VI	GCNNNNNNNGC	4 cut(s)	344, 575, 929, 938
HpyF3I	CTNAG	4 cut(s)	30, 264, 789, 955
HpySE526I	ACGT	1 cut(s)	961
Hsp92II	CATG	7 cut(s)	491, 524, 665, 797, 837, 941, 976
HspAI	GCGC	1 cut(s)	786
Kpn2I	TCCGGA	1 cut(s)	193
Kzo9I	GATC	7 cut(s)	54, 131, 198, 230, 397, 428, 591
LmnI	GCTCC	2 cut(s)	206, 724
Lsp1109I	GCAGC	2 cut(s)	553, 620
LweI	GCATC	2 cut(s)	439, 698
MaeI	CTAG	1 cut(s)	581
MaeII	ACGT	1 cut(s)	961
MaeIII	GTNAC	3 cut(s)	13, 863, 962
MalI	GATC	7 cut(s)	56, 133, 200, 232, 399, 430, 593
MboI	GATC	7 cut(s)	54, 131, 198, 230, 397, 428, 591
MboII	GAAGA	4 cut(s)	211, 520, 660, 728
MflI	RGATCY	2 cut(s)	54, 131
MhlI	GDGCHC	2 cut(s)	306, 747
MluCI	AATT	2 cut(s)	257, 361
MlyI	GAGTC	3 cut(s)	580, 674, 894
MroI	TCCGGA	1 cut(s)	193
MseI	TTAA	1 cut(s)	750
MslI	CAYNNNNRTG	1 cut(s)	492
MspI	CCGG	4 cut(s)	165, 194, 204, 575
MvnI	CGCG	2 cut(s)	74, 476
MwoI	GCNNNNNNNGC	4 cut(s)	344, 575, 929, 938
NcoI	CCATGG	1 cut(s)	972
NdeII	GATC	7 cut(s)	54, 131, 198, 230, 397, 428, 591
NlaIII	CATG	7 cut(s)	491, 524, 665, 797, 837, 941, 976
NlaIV	GGNNCC	3 cut(s)	56, 414, 621
NmuCI	GTSAC	3 cut(s)	13, 863, 962
NspI	RCATGY	2 cut(s)	524, 837
PciI	ACATGT	1 cut(s)	520
PfeI	GAWTC	6 cut(s)	97, 237, 269, 370, 805, 847
PkrI	GCNGC	4 cut(s)	73, 478, 568, 635
PleI	GAGTC	3 cut(s)	580, 673, 894
PpsI	GAGTC	3 cut(s)	580, 673, 894
PpuMI	RGGWCCY	1 cut(s)	412
PscI	ACATGT	1 cut(s)	520
Psp124BI	GAGCTC	1 cut(s)	306
Psp5II	RGGWCCY	1 cut(s)	412
PspEI	GGTNACC	1 cut(s)	863
PspN4I	GGNNCC	3 cut(s)	56, 414, 621
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	54, 131
RseI	CAYNNNNRTG	1 cut(s)	492
SacI	GAGCTC	1 cut(s)	306
SalI	GTCGAC	1 cut(s)	837
SaqAI	TTAA	1 cut(s)	750
SatI	GCNGC	4 cut(s)	72, 477, 567, 634
Sau3AI	GATC	7 cut(s)	54, 131, 198, 230, 397, 428, 591
Sau96I	GGNCC	1 cut(s)	412
SchI	GAGTC	3 cut(s)	580, 674, 894
SduI	GDGCHC	2 cut(s)	306, 747
SfaNI	GCATC	2 cut(s)	439, 698
SfcI	CTRYAG	1 cut(s)	627
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	257, 361
SsiI	CCGC	6 cut(s)	69, 72, 476, 817, 888, 932
SspMI	CTAG	1 cut(s)	581
SstI	GAGCTC	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	972
TaaI	ACNGT	4 cut(s)	19, 88, 181, 319
TaiI	ACGT	1 cut(s)	964
TasI	AATT	2 cut(s)	257, 361
TauI	GCSGC	2 cut(s)	74, 479
TfiI	GAWTC	6 cut(s)	97, 237, 269, 370, 805, 847
Tru1I	TTAA	1 cut(s)	750
Tru9I	TTAA	1 cut(s)	750
TscAI	CASTG	2 cut(s)	948, 955
TseFI	GTSAC	3 cut(s)	13, 863, 962
TseI	GCWGC	2 cut(s)	566, 633
Tsp45I	GTSAC	3 cut(s)	13, 863, 962
TspDTI	ATGAA	4 cut(s)	229, 729, 818, 843
TspRI	CASTG	2 cut(s)	948, 955
VpaK11BI	GGWCC	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	1 cut(s)	257
XbaI	TCTAGA	1 cut(s)	580
XceI	RCATGY	2 cut(s)	524, 837
XmiI	GTMKAC	1 cut(s)	838
XspI	CTAG	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.