Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008348

Physical Location & Seq

Genomic Coordinates Forward (+)

9789534 .. 9792692

Gene Structure 3159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00226270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGACAGTCTCCGCTGCATTCAAGTCTTCCAAACTCATCTCCTGGAAATCGACCGGTCGGCTTCAGCAGACCTTAGCGGGATGCATAGAGCGCGCGGGGAAGAGCTTGCACAGCGGCAAGGTCTCCACGGTGAAGTTGTGGCCGGAGCTCGCCGGAAAAGGGAGGTACTTTGACTTTCGGTCAACTCTGATTCGAGCTTCGATCGAGTTCGCTGAGGATTCGCCTCTCTGCACCACTCTCTGTAAAGATGGGCTGAAAATCCCAACTGTTGAGCACTTGCTTTCGGCTTTGGAAGCTATGGAGGTCGATAATTGCAGGATTGAGATTGAGAATTCGGATTCCCAAGATGATTGCAGTGTTGAGGTTCCTATCTTTGATGGATCAGCAAGAGTGTGGGTGGAGGCGATAGAACAAGTTGGGTTGCAAATCGCAACAGATCATCATGGTGACTGTTGTGAAAAGATGATAGCATATGTGAATGAACCGGTGCATGTGTGGAGGAATGATTCTTTTGTTGCTGCATTCCCATCAGAAGAAATCCGTATCACTTATGGGATTGACTTTCGACAGGTGCCAGCCATTGGCAGCCAGTGGTTTTCTGTGACTTTATTGGATAAATCTTTATATTCCAAGCAGATAGCTTTGTCAAGAACCTTTTGCATTTATGAGGAGGTAGAGCGAATGCGCAATGCAGGACTCATAAAAGGAGGTTCGTTAGAAAATGCAATTGTTTGTAGTGCTAGTAAAGGTTGGTTGAATCCACCACTTCGTTTTCAAGATGAACCTTGTCGTCATAAGGTCTTAGATCTTATTGGTGATGTTTCGCTTTTGGCAAGAAGTGGTAGCCAAGGGCTTCCCGTGGCACACTTAGTGGCTTACAAGGGTGGCCACACACTGCATTCTGATTTAGTTCGCCGTCTATCAGGAATGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008759 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxC

Protein Analysis

311

Amino Acids

34.4

Weight (kDa)

6.16

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LpxC	PF03331	22 - 307	6.6e-81	UDP-3-O-acyl N-acetylglycosamine deacetylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24793 AT1G24793 AT1G25054 AT1G25145 AT1G25210 AT1G25210
fragaria_vesca	FvH4_4g33550
malus_domestica	MD13G1020300.v1.1
prunus_persica	Prupe.1G333400_v2.0.a1
pyrus_communis	pycom13g01710
rosa_chinensis	RchiOBHm_Chr7g0235121
rosa_laevigata	RLG00000001181
rosa_multiflora	Rmu_sc0002239.1_g000018 Rmu_sc0028222.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226270
rosa_rugosa	Rorug07G0287700 Rorug07G0287700 Rorug07G0287800
rosa_samantha	Rh7AG442700 Rh7BG415300 Rh7CG463500 Rh7DG432400
rosa_wichuraiana	Rw7G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	686
AccB1I	GGYRCC	1 cut(s)	571
AccB7I	CCANNNNNTGG	1 cut(s)	581
AccII	CGCG	2 cut(s)	93, 95
AciI	CCGC	4 cut(s)	12, 77, 95, 114
AclWI	GGATC	1 cut(s)	388
AcoI	YGGCCR	2 cut(s)	140, 886
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	871
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	159, 581
AgeI	ACCGGT	2 cut(s)	53, 484
AgsI	TTSAA	3 cut(s)	22, 757, 776
AhdI	GACNNNNNGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	5 cut(s)	105, 148, 197, 296, 641
AluI	AGCT	5 cut(s)	105, 148, 197, 296, 641
Alw21I	GWGCWC	2 cut(s)	150, 276
Alw26I	GTCTC	2 cut(s)	13, 127
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	140, 886
ApeKI	GCWGC	3 cut(s)	14, 518, 585
ApoI	RAATTY	1 cut(s)	331
AsiGI	ACCGGT	2 cut(s)	53, 484
AspLEI	GCGC	3 cut(s)	93, 95, 687
AsuHPI	GGTGA	3 cut(s)	142, 458, 827
BalI	TGGCCA	1 cut(s)	888
BanI	GGYRCC	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	150, 276
BbvCI	CCTCAGC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	505, 597
BccI	CCATC	3 cut(s)	242, 371, 535
BceAI	ACGGC	1 cut(s)	900
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	13, 127
BfaI	CTAG	1 cut(s)	741
BglII	AGATCT	1 cut(s)	805
BisI	GCNGC	4 cut(s)	15, 115, 519, 586
BlsI	GCNGC	4 cut(s)	16, 116, 520, 587
Bme1390I	CCNGG	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmiI	GGNNCC	2 cut(s)	366, 573
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	18
Bpu10I	CCTNAGC	2 cut(s)	73, 213
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	3 cut(s)	126, 847, 858
BsaWI	WCCGGW	2 cut(s)	53, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 581
Bse118I	RCCGGY	2 cut(s)	53, 484
Bse1I	ACTGG	1 cut(s)	589
Bse3DI	GCAATG	1 cut(s)	694
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	3 cut(s)	126, 847, 858
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	2 cut(s)	159, 581
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	589
BsePI	GCGCGC	1 cut(s)	91
BseRI	GAGGAG	1 cut(s)	683
BseXI	GCAGC	2 cut(s)	505, 597
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	2 cut(s)	93, 95
Bsh1285I	CGRYCG	3 cut(s)	54, 58, 204
BshFI	GGCC	2 cut(s)	142, 888
BshNI	GGYRCC	1 cut(s)	571
BshTI	ACCGGT	2 cut(s)	53, 484
BsiEI	CGRYCG	3 cut(s)	54, 58, 204
BsiHKAI	GWGCWC	2 cut(s)	150, 276
BsiSI	CCGG	4 cut(s)	54, 143, 153, 485
BslI	CCNNNNNNNGG	2 cut(s)	159, 581
BsmAI	GTCTC	2 cut(s)	13, 127
BsmI	GAATGC	4 cut(s)	17, 521, 687, 898
BsnI	GGCC	2 cut(s)	142, 888
Bso31I	GGTCTC	1 cut(s)	127
Bsp1286I	GDGCHC	2 cut(s)	150, 276
Bsp143I	GATC	5 cut(s)	201, 380, 436, 805, 930
BspACI	CCGC	4 cut(s)	12, 77, 95, 114
BspANI	GGCC	2 cut(s)	142, 888
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	2 cut(s)	93, 95
BspLI	GGNNCC	2 cut(s)	366, 573
BspPI	GGATC	1 cut(s)	388
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	571
BspTNI	GGTCTC	1 cut(s)	127
BsrDI	GCAATG	1 cut(s)	694
BsrFI	RCCGGY	2 cut(s)	53, 484
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	2 cut(s)	53, 484
BssECI	CCNNGG	3 cut(s)	126, 847, 858
BssHII	GCGCGC	1 cut(s)	91
BssMI	GATC	5 cut(s)	201, 380, 436, 805, 930
BssT1I	CCWWGG	1 cut(s)	847
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	4 cut(s)	7, 130, 268, 452
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	93, 107, 150, 576
BstDEI	CTNAG	4 cut(s)	73, 213, 802, 868
BstDSI	CCRYGG	2 cut(s)	126, 858
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	93, 95
BstHHI	GCGC	3 cut(s)	93, 95, 687
BstKTI	GATC	5 cut(s)	204, 383, 439, 808, 933
BstMAI	GTCTC	2 cut(s)	13, 127
BstMBI	GATC	5 cut(s)	201, 380, 436, 805, 930
BstMCI	CGRYCG	3 cut(s)	54, 58, 204
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 111, 293
BstNI	CCWGG	1 cut(s)	43
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	41
BstUI	CGCG	2 cut(s)	93, 95
BstV1I	GCAGC	2 cut(s)	505, 597
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BsuRI	GGCC	2 cut(s)	142, 888
BtgI	CCRYGG	2 cut(s)	126, 858
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	2 cut(s)	361, 893
BtsIMutI	CAGTG	3 cut(s)	361, 596, 893
Cac8I	GCNNGC	4 cut(s)	93, 107, 150, 576
CfoI	GCGC	3 cut(s)	93, 95, 687
Cfr10I	RCCGGY	2 cut(s)	53, 484
Csp6I	GTAC	1 cut(s)	166
CspAI	ACCGGT	2 cut(s)	53, 484
CviAII	CATG	2 cut(s)	443, 491
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	73, 213, 802, 868
DpnI	GATC	5 cut(s)	203, 382, 438, 807, 932
DpnII	GATC	5 cut(s)	201, 380, 436, 805, 930
DraIII	CACNNNGTG	1 cut(s)	871
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	2 cut(s)	140, 886
Eam1104I	CTCTTC	1 cut(s)	95
Eam1105I	GACNNNNNGTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	847
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	47
EcoICRI	GAGCTC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	41
EcoT14I	CCWWGG	1 cut(s)	847
EcoT22I	ATGCAT	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	847
FaeI	CATG	2 cut(s)	446, 494
FatI	CATG	2 cut(s)	442, 490
FauI	CCCGC	2 cut(s)	70, 88
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	15, 115, 519, 586
FokI	GGATG	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	4 cut(s)	15, 115, 519, 586
FspBI	CTAG	1 cut(s)	741
FspI	TGCGCA	1 cut(s)	686
GlaI	GCGC	3 cut(s)	92, 94, 686
GluI	GCNGC	4 cut(s)	15, 115, 519, 586
HaeIII	GGCC	2 cut(s)	142, 888
HapII	CCGG	4 cut(s)	54, 143, 153, 485
HhaI	GCGC	3 cut(s)	93, 95, 687
Hin1II	CATG	2 cut(s)	446, 494
Hin6I	GCGC	3 cut(s)	91, 93, 685
HinP1I	GCGC	3 cut(s)	91, 93, 685
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	6 cut(s)	190, 218, 338, 506, 696, 757
HpaII	CCGG	4 cut(s)	54, 143, 153, 485
HphI	GGTGA	3 cut(s)	142, 458, 827
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	4 cut(s)	189, 337, 532, 904
Hpy188III	TCNNGA	3 cut(s)	648, 776, 924
Hpy8I	GTNNAC	1 cut(s)	183
HpyCH4III	ACNGT	4 cut(s)	7, 130, 268, 452
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 111, 293
HpyF3I	CTNAG	4 cut(s)	73, 213, 802, 868
Hsp92II	CATG	2 cut(s)	446, 494
HspAI	GCGC	3 cut(s)	91, 93, 685
Kzo9I	GATC	5 cut(s)	201, 380, 436, 805, 930
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	145
Lsp1109I	GCAGC	2 cut(s)	505, 597
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	1 cut(s)	741
MaeIII	GTNAC	2 cut(s)	446, 601
MalI	GATC	5 cut(s)	203, 382, 438, 807, 932
MboI	GATC	5 cut(s)	201, 380, 436, 805, 930
MboII	GAAGA	3 cut(s)	18, 112, 545
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	1 cut(s)	805
MhlI	GDGCHC	2 cut(s)	150, 276
MlsI	TGGCCA	1 cut(s)	888
MluCI	AATT	3 cut(s)	310, 331, 726
MluNI	TGGCCA	1 cut(s)	888
MlyI	GAGTC	1 cut(s)	690
Mox20I	TGGCCA	1 cut(s)	888
Mph1103I	ATGCAT	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	888
MslI	CAYNNNNRTG	1 cut(s)	444
Msp20I	TGGCCA	1 cut(s)	888
MspA1I	CMGCKG	2 cut(s)	14, 114
MspI	CCGG	4 cut(s)	54, 143, 153, 485
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	4 cut(s)	17, 521, 687, 898
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	2 cut(s)	93, 95
MwoI	GCNNNNNNNGC	3 cut(s)	90, 111, 293
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	5 cut(s)	201, 380, 436, 805, 930
NlaIII	CATG	2 cut(s)	446, 494
NlaIV	GGNNCC	2 cut(s)	366, 573
NmuCI	GTSAC	2 cut(s)	446, 601
NsbI	TGCGCA	1 cut(s)	686
NsiI	ATGCAT	1 cut(s)	86
NspI	RCATGY	1 cut(s)	494
PauI	GCGCGC	1 cut(s)	91
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	4 cut(s)	17, 521, 687, 898
PfeI	GAWTC	5 cut(s)	190, 218, 338, 506, 757
PflMI	CCANNNNNTGG	1 cut(s)	581
PfoI	TCCNGGA	1 cut(s)	41
PinAI	ACCGGT	2 cut(s)	53, 484
PkrI	GCNGC	4 cut(s)	16, 116, 520, 587
Ple19I	CGATCG	1 cut(s)	204
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	366, 573
PsuI	RGATCY	1 cut(s)	805
PteI	GCGCGC	1 cut(s)	91
PvuI	CGATCG	1 cut(s)	204
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	444
SacI	GAGCTC	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	4 cut(s)	15, 115, 519, 586
Sau3AI	GATC	5 cut(s)	201, 380, 436, 805, 930
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	150, 276
SfaNI	GCATC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	3 cut(s)	310, 331, 726
SsiI	CCGC	4 cut(s)	12, 77, 95, 114
SspMI	CTAG	1 cut(s)	741
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	41
StyI	CCWWGG	1 cut(s)	847
TaaI	ACNGT	4 cut(s)	7, 130, 268, 452
TaqI	TCGA	6 cut(s)	50, 193, 200, 204, 306, 565
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	3 cut(s)	310, 331, 726
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	5 cut(s)	190, 218, 338, 506, 757
TscAI	CASTG	3 cut(s)	361, 596, 900
TseFI	GTSAC	2 cut(s)	446, 601
TseI	GCWGC	3 cut(s)	14, 518, 585
Tsp45I	GTSAC	2 cut(s)	446, 601
TspDTI	ATGAA	2 cut(s)	495, 795
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	3 cut(s)	361, 596, 900
Van91I	CCANNNNNTGG	1 cut(s)	581
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	1 cut(s)	741
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.