AT1G25210

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008348
Physical Location & Seq
Forward (+)
8833245 .. 8835235
1991 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25210.2

Sequence Viewer

Length: 777 bp
ATGAGACTCCCCGTCACCGTCAAAGCCACTAAGCCGTCGTTTCTCGTCATTTGGATCCGATACTCCTCCGCCGCGTCGTCGCCGACAGTCTCCTTGAATCCAAGTGGACGATTACAGCAAACTCTCGCAGGATCTGTGGAAGTGAAAGGAAAATCTCTGCACTCCGGTAAGTTCTCGACGGTGAAGCTAAATCCGGAGATCGCCGGAGCTGGTAGGTTCTTCGAGTTTCGATCCAGATTCATCCCTGCGTCGATTGAATTTGCTCAGGAATCGCCTCTTTGCACGACGCTGTTGAAAGATGAGCTCAAAATCCGAACCGTTGAGCATTTGTTATCAGCTCTTGAGGCGAAGGGAGTTGATAATTGCAGGATTCAAATCGAGAGCGAAAGTTCCGATGATCGAGAAGTCGAGGTCCCTATTTTTGATGGATCAGCTAAAGAATGGGTCGATGCGATACAAGGAGTTGGCATAAACGCGGCTCAAAACCATGATGGTGAAAGTGTAGAGAAGATGGTCGCACATGTGAACAAGCCTGTGTATGTTTGCAAGAACGATACTTTTGTTGCTGCATTTCCGGCTCTAGAGACTCGGATCACTTGTGGTATCGACTTCCCACAGGTGCCTGCTATAGGCTGCCAATGGTTTTCTTGGAGACCTATCCATGAGTCTTCTTTTGCAAAGGATATCGCATCATCAAGAACCTTCTGTGTCTATGAAGAGGTGGAGCGTATGCGTGAAGCAGGGCTCATTAAAGGAGCGCTGAGCATGGATGGATGA

Protein Analysis

258

Amino Acids

28.37

Weight (kDa)

6.01

Isoelectric Point (pI)

36.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxC PF03331 39 - 324 2.5e-84 UDP-3-O-acyl N-acetylglycosamine deacetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 619
AccII CGCG 2 cut(s) 74, 476
AccIII TCCGGA 1 cut(s) 193
AciI CCGC 3 cut(s) 69, 72, 476
AclWI GGATC 6 cut(s) 49, 62, 139, 225, 436, 599
AcsI RAATTY 1 cut(s) 257
AfeI AGCGCT 1 cut(s) 759
AfiI CCNNNNNNNGG 1 cut(s) 629
AflIII ACRYGT 1 cut(s) 520
AgsI TTSAA 4 cut(s) 97, 257, 295, 374
AhdI GACNNNNNGTC 1 cut(s) 11
AluBI AGCT 5 cut(s) 187, 209, 304, 338, 434
AluI AGCT 5 cut(s) 187, 209, 304, 338, 434
Alw21I GWGCWC 1 cut(s) 306
Alw26I GTCTC 3 cut(s) 94, 578, 646
AlwI GGATC 6 cut(s) 49, 62, 139, 225, 436, 599
AlwNI CAGNNNCTG 1 cut(s) 134
Aor13HI TCCGGA 1 cut(s) 193
Aor51HI AGCGCT 1 cut(s) 759
ApeKI GCWGC 2 cut(s) 566, 633
ApoI RAATTY 1 cut(s) 257
AspLEI GCGC 1 cut(s) 760
AspS9I GGNCC 1 cut(s) 412
AsuHPI GGTGA 3 cut(s) 7, 193, 506
AvaII GGWCC 1 cut(s) 412
BaeI ACNNNNGTAYC 2 cut(s) 546, 579
BamHI GGATCC 1 cut(s) 54
BanI GGYRCC 1 cut(s) 619
BanII GRGCYC 2 cut(s) 306, 747
BbsI GAAGAC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 553, 620
BccI CCATC 4 cut(s) 419, 485, 505, 764
BceAI ACGGC 1 cut(s) 19
BcoDI GTCTC 3 cut(s) 94, 578, 646
BfaI CTAG 1 cut(s) 581
BfmI CTRYAG 1 cut(s) 627
BfoI RGCGCY 1 cut(s) 761
BisI GCNGC 4 cut(s) 72, 477, 567, 634
BlpI GCTNAGC 1 cut(s) 761
BlsI GCNGC 4 cut(s) 73, 478, 568, 635
Bme18I GGWCC 1 cut(s) 412
BmeRI GACNNNNNGTC 1 cut(s) 11
BmgT120I GGNCC 1 cut(s) 412
BmiI GGNNCC 3 cut(s) 56, 414, 621
BmsI GCATC 2 cut(s) 439, 698
BpiI GAAGAC 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 264
Bpu1102I GCTNAGC 1 cut(s) 761
BpuEI CTTGAG 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 646
BsaWI WCCGGW 2 cut(s) 164, 193
Bsc4I CCNNNNNNNGG 1 cut(s) 629
Bse8I GATNNNNATC 1 cut(s) 374
BseAI TCCGGA 1 cut(s) 193
BseGI GGATG 2 cut(s) 240, 775
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 629
BseMII CTCAG 2 cut(s) 278, 752
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 553, 620
BsgI GTGCAG 1 cut(s) 143
Bsh1236I CGCG 2 cut(s) 74, 476
BshNI GGYRCC 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 306
BsiSI CCGG 4 cut(s) 165, 194, 204, 575
BslFI GGGAC 1 cut(s) 398
BslI CCNNNNNNNGG 1 cut(s) 629
BsmAI GTCTC 3 cut(s) 94, 578, 646
BsmFI GGGAC 1 cut(s) 398
Bso31I GGTCTC 1 cut(s) 646
Bsp1286I GDGCHC 2 cut(s) 306, 747
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 7 cut(s) 54, 131, 198, 230, 397, 428, 591
Bsp1720I GCTNAGC 1 cut(s) 761
BspACI CCGC 3 cut(s) 69, 72, 476
BspCNI CTCAG 2 cut(s) 277, 753
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 2 cut(s) 74, 476
BspLI GGNNCC 3 cut(s) 56, 414, 621
BspPI GGATC 6 cut(s) 49, 62, 139, 225, 436, 599
BspT107I GGYRCC 1 cut(s) 619
BspTNI GGTCTC 1 cut(s) 646
BssMI GATC 7 cut(s) 54, 131, 198, 230, 397, 428, 591
Bst4CI ACNGT 4 cut(s) 19, 88, 181, 319
Bst6I CTCTTC 1 cut(s) 711
BstC8I GCNNGC 1 cut(s) 624
BstDEI CTNAG 3 cut(s) 30, 264, 761
BstENI CCTNNNNNAGG 1 cut(s) 627
BstF5I GGATG 2 cut(s) 240, 775
BstFNI CGCG 2 cut(s) 74, 476
BstH2I RGCGCY 1 cut(s) 761
BstHHI GCGC 1 cut(s) 760
BstKTI GATC 7 cut(s) 57, 134, 201, 233, 400, 431, 594
BstMAI GTCTC 3 cut(s) 94, 578, 646
BstMBI GATC 7 cut(s) 54, 131, 198, 230, 397, 428, 591
BstMWI GCNNNNNNNGC 2 cut(s) 344, 575
BstNSI RCATGY 1 cut(s) 524
BstSFI CTRYAG 1 cut(s) 627
BstUI CGCG 2 cut(s) 74, 476
BstV1I GCAGC 2 cut(s) 553, 620
BstV2I GAAGAC 1 cut(s) 660
BstX2I RGATCY 2 cut(s) 54, 131
BstYI RGATCY 2 cut(s) 54, 131
BtsCI GGATG 2 cut(s) 240, 775
Cac8I GCNNGC 1 cut(s) 624
CaiI CAGNNNCTG 1 cut(s) 134
CfoI GCGC 1 cut(s) 760
Cfr13I GGNCC 1 cut(s) 412
CseI GACGC 3 cut(s) 63, 237, 295
CviAII CATG 4 cut(s) 488, 521, 662, 766
DdeI CTNAG 3 cut(s) 30, 264, 761
DpnI GATC 7 cut(s) 56, 133, 200, 232, 399, 430, 593
DpnII GATC 7 cut(s) 54, 131, 198, 230, 397, 428, 591
DriI GACNNNNNGTC 1 cut(s) 11
Eam1104I CTCTTC 1 cut(s) 711
Eam1105I GACNNNNNGTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 711
EciI GGCGGA 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 2 cut(s) 306, 747
Eco31I GGTCTC 1 cut(s) 646
Eco32I GATATC 1 cut(s) 685
Eco47I GGWCC 1 cut(s) 412
Eco47III AGCGCT 1 cut(s) 759
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoNI CCTNNNNNAGG 1 cut(s) 627
EcoO109I RGGNCCY 1 cut(s) 412
EcoRV GATATC 1 cut(s) 685
EcoT38I GRGCYC 2 cut(s) 306, 747
FaeI CATG 4 cut(s) 491, 524, 665, 769
FaiI YATR 9 cut(s) 470, 489, 522, 540, 629, 663, 714, 731, 767
FaqI GGGAC 1 cut(s) 398
FatI CATG 4 cut(s) 487, 520, 661, 765
Fnu4HI GCNGC 4 cut(s) 72, 477, 567, 634
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 2 cut(s) 306, 747
Fsp4HI GCNGC 4 cut(s) 72, 477, 567, 634
FspBI CTAG 1 cut(s) 581
GlaI GCGC 1 cut(s) 759
GluI GCNGC 4 cut(s) 72, 477, 567, 634
HaeII RGCGCY 1 cut(s) 761
HapII CCGG 4 cut(s) 165, 194, 204, 575
HgaI GACGC 3 cut(s) 63, 237, 295
HhaI GCGC 1 cut(s) 760
Hin1II CATG 4 cut(s) 491, 524, 665, 769
Hin6I GCGC 1 cut(s) 758
HinP1I GCGC 1 cut(s) 758
HinfI GANTC 7 cut(s) 6, 97, 237, 269, 370, 586, 665
HpaII CCGG 4 cut(s) 165, 194, 204, 575
HphI GGTGA 3 cut(s) 7, 193, 506
Hpy166II GTNNAC 2 cut(s) 107, 526
Hpy188I TCNGA 4 cut(s) 59, 314, 394, 591
Hpy188III TCNNGA 9 cut(s) 175, 194, 234, 266, 341, 379, 401, 581, 696
Hpy8I GTNNAC 2 cut(s) 107, 526
Hpy99I CGWCG 6 cut(s) 40, 79, 82, 181, 253, 289
HpyAV CCTTC 2 cut(s) 343, 712
HpyCH4III ACNGT 4 cut(s) 19, 88, 181, 319
HpyCH4V TGCA 6 cut(s) 160, 282, 366, 546, 569, 677
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 575
HpyF3I CTNAG 3 cut(s) 30, 264, 761
Hsp92II CATG 4 cut(s) 491, 524, 665, 769
HspAI GCGC 1 cut(s) 758
Kpn2I TCCGGA 1 cut(s) 193
Kzo9I GATC 7 cut(s) 54, 131, 198, 230, 397, 428, 591
LmnI GCTCC 3 cut(s) 206, 724, 755
Lsp1109I GCAGC 2 cut(s) 553, 620
LweI GCATC 2 cut(s) 439, 698
MaeI CTAG 1 cut(s) 581
MaeIII GTNAC 1 cut(s) 13
MalI GATC 7 cut(s) 56, 133, 200, 232, 399, 430, 593
MboI GATC 7 cut(s) 54, 131, 198, 230, 397, 428, 591
MboII GAAGA 4 cut(s) 211, 520, 660, 728
MflI RGATCY 2 cut(s) 54, 131
MhlI GDGCHC 2 cut(s) 306, 747
MluCI AATT 2 cut(s) 257, 361
MlyI GAGTC 2 cut(s) 580, 674
MnlI CCTC 5 cut(s) 76, 285, 337, 403, 712
MroI TCCGGA 1 cut(s) 193
MseI TTAA 1 cut(s) 750
MslI CAYNNNNRTG 1 cut(s) 492
MspI CCGG 4 cut(s) 165, 194, 204, 575
MvnI CGCG 2 cut(s) 74, 476
MwoI GCNNNNNNNGC 2 cut(s) 344, 575
NdeII GATC 7 cut(s) 54, 131, 198, 230, 397, 428, 591
NlaIII CATG 4 cut(s) 491, 524, 665, 769
NlaIV GGNNCC 3 cut(s) 56, 414, 621
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 524
PciI ACATGT 1 cut(s) 520
PfeI GAWTC 4 cut(s) 97, 237, 269, 370
PkrI GCNGC 4 cut(s) 73, 478, 568, 635
PleI GAGTC 2 cut(s) 580, 673
PpsI GAGTC 2 cut(s) 580, 673
PpuMI RGGWCCY 1 cut(s) 412
PscI ACATGT 1 cut(s) 520
Psp124BI GAGCTC 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 412
PspN4I GGNNCC 3 cut(s) 56, 414, 621
PspPI GGNCC 1 cut(s) 412
PspPPI RGGWCCY 1 cut(s) 412
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 54, 131
RseI CAYNNNNRTG 1 cut(s) 492
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 4 cut(s) 72, 477, 567, 634
Sau3AI GATC 7 cut(s) 54, 131, 198, 230, 397, 428, 591
Sau96I GGNCC 1 cut(s) 412
SchI GAGTC 2 cut(s) 580, 674
SduI GDGCHC 2 cut(s) 306, 747
SfaNI GCATC 2 cut(s) 439, 698
SfcI CTRYAG 1 cut(s) 627
SinI GGWCC 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 492
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 257, 361
SsiI CCGC 3 cut(s) 69, 72, 476
SspMI CTAG 1 cut(s) 581
SstI GAGCTC 1 cut(s) 306
TaaI ACNGT 4 cut(s) 19, 88, 181, 319
TaqI TCGA 9 cut(s) 176, 222, 229, 251, 378, 400, 408, 447, 606
TasI AATT 2 cut(s) 257, 361
TauI GCSGC 2 cut(s) 74, 479
TfiI GAWTC 4 cut(s) 97, 237, 269, 370
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 2 cut(s) 566, 633
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 2 cut(s) 229, 729
VpaK11BI GGWCC 1 cut(s) 412
XagI CCTNNNNNAGG 1 cut(s) 627
XapI RAATTY 1 cut(s) 257
XbaI TCTAGA 1 cut(s) 580
XceI RCATGY 1 cut(s) 524
XspI CTAG 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.