FvH4_4g33550

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0008348
Physical Location & Seq
Reverse (-)
31758868 .. 31761487
2620 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33550.t1

Sequence Viewer

Length: 942 bp
ATGACACTCTCCGCTGCACTCAACGCATTCAAGTCTTCCAAACTCATCTCCTGGAAATCGACCGGTCGGCTTCAGCAAACCTTAGCGGGATGCATAGAGCGCAAGGGGAAGACTTTGCACAGCGGCAAGGTGTCCACGGTGAAGTTATGGCCGGAGCTCGCCGGAAAAGGAAGGTACTTTGACTTCCGGTCAACTCTGATTCGCGCTTCGATCGAGTTCGCTGAGGATTCGCCTCTGTGCACTACTCTATGTAAAGACGGGGTCAAGATTCGAACTGTTGAGCACTTGCTTTCGGCTTTGGAAGCTATGGAGGTCGATAATTGCAGGATTGAGATTGAGAATTTGGATTCTGAAGATTGCAGTGTTGAGGTTCCTATATTCGATGGATCAGCAAGAGAGTGGGTGGAGGCAATAGAACAAGTTGGGTTACGAGTTGCAGCTGATCATCAGGGTGAGTGTTGTGAAAAGATGGTGGCATATGTGAAGGAACCGGTGCATGTGTGGAGGAATGATTCTTTTGTTGCCGCATTCCCATCACAAGAAGTCGGTATCACGTATGGGATTGACTTTCAGCAGGTGCCGGCCATTGGCAGGCAGTGGTTTTCTGTGTCTTCATTGGATAAATCTTTATATTCCGAGCAGATAGCTTTGTCAAGAACCTTTTGCACTTATGAGGAGGTGGAGCAGATGCGCAGTGCAGGACTTATAAAAGGAGGTTCATTAGAAAATGCAATTGTTTGTAGTGCTAGTAAAGGTTGGTTGAATCCACCACTTCGTTTTCAAGATGAACCTTGTCGTCATAAGGTCTTAGATCTTATCGGTGATGTTTCTCTTTTTGCAAGGTATGGTAGCCAAGGGCTTCCTGTGGCACACATAGTGGCCTACAAGGGTGGCCACACACTGCATTCTGTTTTAGTTCGGCGCCTATCAGAAATTATCTAA

Protein Analysis

314

Amino Acids

34.73

Weight (kDa)

6.1

Isoelectric Point (pI)

46.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxC PF03331 25 - 310 7.1e-82 UDP-3-O-acyl N-acetylglycosamine deacetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
AarI CACCTGC 1 cut(s) 565
Acc16I TGCGCA 1 cut(s) 692
Acc36I ACCTGC 1 cut(s) 565
AccB1I GGYRCC 2 cut(s) 577, 921
AccII CGCG 1 cut(s) 204
AciI CCGC 4 cut(s) 12, 86, 123, 525
AclWI GGATC 1 cut(s) 394
AcoI YGGCCR 3 cut(s) 149, 582, 892
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 2 cut(s) 56, 372
AcyI GRCGYC 1 cut(s) 922
AdeI CACNNNGTG 1 cut(s) 877
AfaI GTAC 1 cut(s) 176
AfiI CCNNNNNNNGG 2 cut(s) 587, 591
AgeI ACCGGT 2 cut(s) 62, 490
AgsI TTSAA 3 cut(s) 31, 763, 782
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 4 cut(s) 157, 305, 440, 647
AluI AGCT 4 cut(s) 157, 305, 440, 647
Alw21I GWGCWC 3 cut(s) 159, 242, 285
Alw44I GTGCAC 1 cut(s) 238
AlwI GGATC 1 cut(s) 394
AoxI GGCC 4 cut(s) 149, 582, 879, 892
ApaLI GTGCAC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 14, 437
ApoI RAATTY 1 cut(s) 340
AsiGI ACCGGT 2 cut(s) 62, 490
AspLEI GCGC 4 cut(s) 102, 206, 693, 924
AsuHPI GGTGA 3 cut(s) 151, 464, 833
AsuII TTCGAA 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 242
BalI TGGCCA 1 cut(s) 894
BanI GGYRCC 2 cut(s) 577, 921
BanII GRGCYC 1 cut(s) 159
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbsI GAAGAC 3 cut(s) 27, 116, 603
Bbv12I GWGCWC 3 cut(s) 159, 242, 285
BbvCI CCTCAGC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 449
BccI CCATC 3 cut(s) 377, 463, 541
BciT130I CCWGG 1 cut(s) 52
BclI TGATCA 1 cut(s) 442
BfaI CTAG 1 cut(s) 747
BfoI RGCGCY 1 cut(s) 925
BfuAI ACCTGC 1 cut(s) 565
BglII AGATCT 1 cut(s) 811
BisI GCNGC 4 cut(s) 15, 124, 438, 525
BlsI GCNGC 4 cut(s) 16, 125, 439, 526
Bme1390I CCNGG 1 cut(s) 52
BmeRI GACNNNNNGTC 1 cut(s) 187
BmiI GGNNCC 4 cut(s) 372, 489, 579, 923
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 80, 678
BpiI GAAGAC 3 cut(s) 27, 116, 603
Bpu10I CCTNAGC 2 cut(s) 82, 222
Bpu14I TTCGAA 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 555
BsaHI GRCGYC 1 cut(s) 922
BsaJI CCNNGG 2 cut(s) 135, 853
BsaWI WCCGGW 3 cut(s) 62, 186, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 587, 591
Bse118I RCCGGY 3 cut(s) 62, 490, 580
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 2 cut(s) 135, 853
BseGI GGATG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 587, 591
BseMII CTCAG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 1 cut(s) 449
BsgI GTGCAG 1 cut(s) 717
Bsh1236I CGCG 1 cut(s) 204
Bsh1285I CGRYCG 3 cut(s) 63, 67, 213
BshFI GGCC 4 cut(s) 151, 584, 881, 894
BshNI GGYRCC 2 cut(s) 577, 921
BshTI ACCGGT 2 cut(s) 62, 490
BsiEI CGRYCG 3 cut(s) 63, 67, 213
BsiHKAI GWGCWC 3 cut(s) 159, 242, 285
BsiSI CCGG 6 cut(s) 63, 152, 162, 187, 491, 581
BslI CCNNNNNNNGG 2 cut(s) 587, 591
BsmI GAATGC 3 cut(s) 26, 527, 904
BsnI GGCC 4 cut(s) 151, 584, 881, 894
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 159, 242, 285
Bsp143I GATC 4 cut(s) 210, 386, 442, 811
BspACI CCGC 4 cut(s) 12, 86, 123, 525
BspANI GGCC 4 cut(s) 151, 584, 881, 894
BspCNI CTCAG 1 cut(s) 214
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 4 cut(s) 372, 489, 579, 923
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 1 cut(s) 394
BspT104I TTCGAA 1 cut(s) 271
BspT107I GGYRCC 2 cut(s) 577, 921
BsrFI RCCGGY 3 cut(s) 62, 490, 580
BssAI RCCGGY 3 cut(s) 62, 490, 580
BssECI CCNNGG 2 cut(s) 135, 853
BssMI GATC 4 cut(s) 210, 386, 442, 811
BssNI GRCGYC 1 cut(s) 922
BssT1I CCWWGG 1 cut(s) 853
Bst2UI CCWGG 1 cut(s) 52
Bst4CI ACNGT 2 cut(s) 139, 277
BstACI GRCGYC 1 cut(s) 922
BstBAI YACGTR 1 cut(s) 555
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 3 cut(s) 159, 582, 593
BstDEI CTNAG 3 cut(s) 82, 222, 808
BstDSI CCRYGG 1 cut(s) 135
BstF5I GGATG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 925
BstHHI GCGC 4 cut(s) 102, 206, 693, 924
BstKTI GATC 4 cut(s) 213, 389, 445, 814
BstMBI GATC 4 cut(s) 210, 386, 442, 811
BstMCI CGRYCG 3 cut(s) 63, 67, 213
BstMWI GCNNNNNNNGC 3 cut(s) 23, 99, 302
BstNI CCWGG 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 500
BstSCI CCNGG 1 cut(s) 50
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 449
BstV2I GAAGAC 3 cut(s) 27, 116, 603
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BsuRI GGCC 4 cut(s) 151, 584, 881, 894
BtgI CCRYGG 1 cut(s) 135
BtsCI GGATG 1 cut(s) 95
BtsI GCAGTG 4 cut(s) 367, 602, 700, 899
BtsIMutI CAGTG 4 cut(s) 367, 602, 700, 899
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 3 cut(s) 159, 582, 593
CfoI GCGC 4 cut(s) 102, 206, 693, 924
Cfr10I RCCGGY 3 cut(s) 62, 490, 580
Csp6I GTAC 1 cut(s) 175
CspAI ACCGGT 2 cut(s) 62, 490
CviAII CATG 1 cut(s) 497
CviQI GTAC 1 cut(s) 175
DdeI CTNAG 3 cut(s) 82, 222, 808
DinI GGCGCC 1 cut(s) 923
DpnI GATC 4 cut(s) 212, 388, 444, 813
DpnII GATC 4 cut(s) 210, 386, 442, 811
DraIII CACNNNGTG 1 cut(s) 877
DriI GACNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 3 cut(s) 149, 582, 892
Eam1105I GACNNNNNGTC 1 cut(s) 187
Ecl136II GAGCTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 853
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 56, 372
EcoICRI GAGCTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 50
EcoT14I CCWWGG 1 cut(s) 853
EcoT22I ATGCAT 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 159
EgeI GGCGCC 1 cut(s) 923
EheI GGCGCC 1 cut(s) 923
ErhI CCWWGG 1 cut(s) 853
FaeI CATG 1 cut(s) 500
FatI CATG 1 cut(s) 496
FauI CCCGC 1 cut(s) 79
FauNDI CATATG 1 cut(s) 478
FbaI TGATCA 1 cut(s) 442
Fnu4HI GCNGC 4 cut(s) 15, 124, 438, 525
FokI GGATG 1 cut(s) 102
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 4 cut(s) 15, 124, 438, 525
FspBI CTAG 1 cut(s) 747
FspI TGCGCA 1 cut(s) 692
GlaI GCGC 4 cut(s) 101, 205, 692, 923
GluI GCNGC 4 cut(s) 15, 124, 438, 525
HaeII RGCGCY 1 cut(s) 925
HaeIII GGCC 4 cut(s) 151, 584, 881, 894
HapII CCGG 6 cut(s) 63, 152, 162, 187, 491, 581
HhaI GCGC 4 cut(s) 102, 206, 693, 924
Hin1I GRCGYC 1 cut(s) 922
Hin1II CATG 1 cut(s) 500
Hin6I GCGC 4 cut(s) 100, 204, 691, 922
HinP1I GCGC 4 cut(s) 100, 204, 691, 922
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HinfI GANTC 6 cut(s) 199, 227, 268, 347, 512, 763
HpaII CCGG 6 cut(s) 63, 152, 162, 187, 491, 581
HphI GGTGA 3 cut(s) 151, 464, 833
Hpy166II GTNNAC 3 cut(s) 135, 192, 240
Hpy188I TCNGA 4 cut(s) 198, 352, 637, 931
Hpy188III TCNNGA 3 cut(s) 265, 654, 782
Hpy8I GTNNAC 3 cut(s) 135, 192, 240
HpyAV CCTTC 2 cut(s) 165, 478
HpyCH4III ACNGT 2 cut(s) 139, 277
HpyCH4IV ACGT 1 cut(s) 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 99, 302
HpyF3I CTNAG 3 cut(s) 82, 222, 808
HpySE526I ACGT 1 cut(s) 554
Hsp92I GRCGYC 1 cut(s) 922
Hsp92II CATG 1 cut(s) 500
HspAI GCGC 4 cut(s) 100, 204, 691, 922
KasI GGCGCC 1 cut(s) 921
KroI GCCGGC 1 cut(s) 580
KroNI GCCGGC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 442
Kzo9I GATC 4 cut(s) 210, 386, 442, 811
LmnI GCTCC 2 cut(s) 154, 682
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 2 cut(s) 80, 678
MaeI CTAG 1 cut(s) 747
MaeII ACGT 1 cut(s) 554
MaeIII GTNAC 1 cut(s) 426
MalI GATC 4 cut(s) 212, 388, 444, 813
MboI GATC 4 cut(s) 210, 386, 442, 811
MboII GAAGA 4 cut(s) 27, 121, 365, 603
MfeI CAATTG 1 cut(s) 732
MflI RGATCY 1 cut(s) 811
MhlI GDGCHC 3 cut(s) 159, 242, 285
MlsI TGGCCA 1 cut(s) 894
MluCI AATT 4 cut(s) 319, 340, 732, 933
MluNI TGGCCA 1 cut(s) 894
Mly113I GGCGCC 1 cut(s) 922
MnlI CCTC 9 cut(s) 217, 243, 304, 361, 400, 498, 667, 670, 707
Mox20I TGGCCA 1 cut(s) 894
Mph1103I ATGCAT 1 cut(s) 95
MroNI GCCGGC 1 cut(s) 580
MscI TGGCCA 1 cut(s) 894
MslI CAYNNNNRTG 1 cut(s) 450
Msp20I TGGCCA 1 cut(s) 894
MspA1I CMGCKG 3 cut(s) 14, 123, 440
MspI CCGG 6 cut(s) 63, 152, 162, 187, 491, 581
MspR9I CCNGG 1 cut(s) 52
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 3 cut(s) 26, 527, 904
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 3 cut(s) 23, 99, 302
NaeI GCCGGC 1 cut(s) 582
NarI GGCGCC 1 cut(s) 922
NdeI CATATG 1 cut(s) 478
NdeII GATC 4 cut(s) 210, 386, 442, 811
NgoMIV GCCGGC 1 cut(s) 580
NlaIII CATG 1 cut(s) 500
NlaIV GGNNCC 4 cut(s) 372, 489, 579, 923
NsbI TGCGCA 1 cut(s) 692
NsiI ATGCAT 1 cut(s) 95
NspI RCATGY 1 cut(s) 500
NspV TTCGAA 1 cut(s) 271
PaqCI CACCTGC 1 cut(s) 565
PctI GAATGC 3 cut(s) 26, 527, 904
PdiI GCCGGC 1 cut(s) 582
PfeI GAWTC 6 cut(s) 199, 227, 268, 347, 512, 763
PflFI GACNNNGTC 1 cut(s) 260
PfoI TCCNGGA 1 cut(s) 50
PinAI ACCGGT 2 cut(s) 62, 490
PkrI GCNGC 4 cut(s) 16, 125, 439, 526
Ple19I CGATCG 1 cut(s) 213
PluTI GGCGCC 1 cut(s) 925
Ppu21I YACGTR 1 cut(s) 555
PsiI TTATAA 1 cut(s) 707
Psp124BI GAGCTC 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 4 cut(s) 372, 489, 579, 923
PsuI RGATCY 1 cut(s) 811
PsyI GACNNNGTC 1 cut(s) 260
PvuI CGATCG 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 440
RsaI GTAC 1 cut(s) 176
RsaNI GTAC 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 450
SacI GAGCTC 1 cut(s) 159
SatI GCNGC 4 cut(s) 15, 124, 438, 525
Sau3AI GATC 4 cut(s) 210, 386, 442, 811
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 3 cut(s) 159, 242, 285
SfaNI GCATC 2 cut(s) 80, 678
SfoI GGCGCC 1 cut(s) 923
SfuI TTCGAA 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 450
Sse9I AATT 4 cut(s) 319, 340, 732, 933
SsiI CCGC 4 cut(s) 12, 86, 123, 525
SspDI GGCGCC 1 cut(s) 921
SspMI CTAG 1 cut(s) 747
SstI GAGCTC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 50
StyI CCWWGG 1 cut(s) 853
TaaI ACNGT 2 cut(s) 139, 277
TaiI ACGT 1 cut(s) 557
TaqI TCGA 6 cut(s) 59, 209, 213, 271, 315, 381
TasI AATT 4 cut(s) 319, 340, 732, 933
TauI GCSGC 2 cut(s) 126, 527
TfiI GAWTC 6 cut(s) 199, 227, 268, 347, 512, 763
TscAI CASTG 4 cut(s) 367, 602, 700, 906
TseI GCWGC 2 cut(s) 14, 437
TspDTI ATGAA 3 cut(s) 603, 708, 801
TspRI CASTG 4 cut(s) 367, 602, 700, 906
Tth111I GACNNNGTC 1 cut(s) 260
VneI GTGCAC 1 cut(s) 238
XapI RAATTY 1 cut(s) 340
XceI RCATGY 1 cut(s) 500
XspI CTAG 1 cut(s) 747
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.