RchiOBHm_Chr7g0235121

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008348
Physical Location & Seq
Reverse (-)
59784984 .. 59788224
3241 bp
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UTR
Exon/CDS
Intron
PRQ21073

Sequence Viewer

Length: 639 bp
ATGGAGGTCGATAATTGCAGGATTGAGATTGAGAATTCGGATTCCCAAGATGATTGCAGTGTTGAGGTTCCTATCTTTGATGGATCAGCAAGAGAGTGGGTGGAGGCGATAGAACAAGTTGGGCTGCAAGTCGCAACAGATCATCATGGTGACTGTTGTGAAAAGATGATAGCATATGTGAATGAACCGGTGCATGTGTGGAGGAATGATTCTTTTGTTGCTGCATTCCCATCAGAAGAAATCCGTATCACTTATGGGATTGACTTTCGACAGGTGCCAGCCATTGCAAGCCAGTGGTTTTGTGTGACTTCATTGGATAAATCTTTATATTCCAAGCAGATAGCTTTGTCAAGAACCTTTTGCATTTATGAGGAGGTAGAGCGAATGCGCAATGCAGGACTCATAAAAGGAGGTTCATTAGAAAATGCAATTGTTTGTAGTGCTAGTAAAGGTTGGTTGAATCCACCACTTCGTTTTCAAGATGAACCTTGTCGTCATAAGGTCTTGGATCTTATCGGTGATGTTTCGCTTTTTGCAAGATGCGGTAGCCAAGGGCTTCCCGTGGCACACTTAGTGGCTTACAAGGGTGGCCACACACTGCATTCTGATTTAGTTCGCCGCCTATCAGGAATGATCTAA

Protein Analysis

212

Amino Acids

23.7

Weight (kDa)

5.13

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxC PF03331 1 - 208 5e-58 UDP-3-O-acyl N-acetylglycosamine deacetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 389
AccB1I GGYRCC 1 cut(s) 274
AciI CCGC 2 cut(s) 543, 619
AclWI GGATC 2 cut(s) 91, 516
AcoI YGGCCR 1 cut(s) 589
AcsI RAATTY 1 cut(s) 34
AdeI CACNNNGTG 1 cut(s) 574
AgeI ACCGGT 1 cut(s) 187
AgsI TTSAA 2 cut(s) 460, 479
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
AlwI GGATC 2 cut(s) 91, 516
AoxI GGCC 1 cut(s) 589
ApeKI GCWGC 2 cut(s) 124, 221
ApoI RAATTY 1 cut(s) 34
AsiGI ACCGGT 1 cut(s) 187
AspLEI GCGC 1 cut(s) 390
AsuHPI GGTGA 2 cut(s) 161, 530
BalI TGGCCA 1 cut(s) 591
BanI GGYRCC 1 cut(s) 274
BbvI GCAGC 2 cut(s) 111, 208
BccI CCATC 2 cut(s) 74, 238
BfaI CTAG 1 cut(s) 444
BisI GCNGC 3 cut(s) 125, 222, 619
BlsI GCNGC 3 cut(s) 126, 223, 620
BmiI GGNNCC 2 cut(s) 69, 276
BmsI GCATC 1 cut(s) 530
BsaJI CCNNGG 2 cut(s) 550, 561
BsaWI WCCGGW 1 cut(s) 187
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 292
Bse3DI GCAATG 2 cut(s) 282, 397
BseDI CCNNGG 2 cut(s) 550, 561
BseMI GCAATG 2 cut(s) 282, 397
BseNI ACTGG 1 cut(s) 292
BseRI GAGGAG 1 cut(s) 386
BseXI GCAGC 2 cut(s) 111, 208
BshFI GGCC 1 cut(s) 591
BshNI GGYRCC 1 cut(s) 274
BshTI ACCGGT 1 cut(s) 187
BsiSI CCGG 1 cut(s) 188
BsmI GAATGC 3 cut(s) 224, 390, 601
BsnI GGCC 1 cut(s) 591
Bsp143I GATC 4 cut(s) 83, 139, 508, 633
BspACI CCGC 2 cut(s) 543, 619
BspANI GGCC 1 cut(s) 591
BspLI GGNNCC 2 cut(s) 69, 276
BspPI GGATC 2 cut(s) 91, 516
BspT107I GGYRCC 1 cut(s) 274
BsrDI GCAATG 2 cut(s) 282, 397
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 1 cut(s) 292
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 550, 561
BssMI GATC 4 cut(s) 83, 139, 508, 633
BssT1I CCWWGG 1 cut(s) 550
Bst4CI ACNGT 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 279, 289
BstDEI CTNAG 1 cut(s) 571
BstDSI CCRYGG 1 cut(s) 561
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 4 cut(s) 86, 142, 511, 636
BstMBI GATC 4 cut(s) 83, 139, 508, 633
BstNSI RCATGY 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 111, 208
BstX2I RGATCY 1 cut(s) 508
BstYI RGATCY 1 cut(s) 508
BsuRI GGCC 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 561
BtsI GCAGTG 2 cut(s) 64, 596
BtsIMutI CAGTG 3 cut(s) 64, 299, 596
Cac8I GCNNGC 2 cut(s) 279, 289
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 187
CspAI ACCGGT 1 cut(s) 187
CviAII CATG 2 cut(s) 146, 194
CviJI RGCY 8 cut(s) 124, 281, 291, 344, 549, 556, 578, 591
CviKI_1 RGCY 8 cut(s) 124, 281, 291, 344, 549, 556, 578, 591
DdeI CTNAG 1 cut(s) 571
DpnI GATC 4 cut(s) 85, 141, 510, 635
DpnII GATC 4 cut(s) 83, 139, 508, 633
DraIII CACNNNGTG 1 cut(s) 574
EaeI YGGCCR 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 550
EcoRI GAATTC 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 550
FaeI CATG 2 cut(s) 149, 197
FaiI YATR 9 cut(s) 147, 175, 177, 195, 255, 328, 369, 404, 498
FatI CATG 2 cut(s) 145, 193
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 3 cut(s) 125, 222, 619
Fsp4HI GCNGC 3 cut(s) 125, 222, 619
FspBI CTAG 1 cut(s) 444
FspI TGCGCA 1 cut(s) 389
GlaI GCGC 1 cut(s) 389
GluI GCNGC 3 cut(s) 125, 222, 619
HaeIII GGCC 1 cut(s) 591
HapII CCGG 1 cut(s) 188
HhaI GCGC 1 cut(s) 390
Hin1II CATG 2 cut(s) 149, 197
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 4 cut(s) 41, 209, 399, 460
HpaII CCGG 1 cut(s) 188
HphI GGTGA 2 cut(s) 161, 530
Hpy188I TCNGA 3 cut(s) 40, 235, 607
Hpy188III TCNNGA 3 cut(s) 351, 479, 627
HpyCH4III ACNGT 1 cut(s) 155
HpyF3I CTNAG 1 cut(s) 571
Hsp92II CATG 2 cut(s) 149, 197
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 4 cut(s) 83, 139, 508, 633
LpnPI CCDG 7 cut(s) 4, 201, 257, 291, 305, 381, 612
Lsp1109I GCAGC 2 cut(s) 111, 208
LweI GCATC 1 cut(s) 530
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 149, 304
MalI GATC 4 cut(s) 85, 141, 510, 635
MboI GATC 4 cut(s) 83, 139, 508, 633
MboII GAAGA 1 cut(s) 248
MfeI CAATTG 1 cut(s) 429
MflI RGATCY 1 cut(s) 508
MlsI TGGCCA 1 cut(s) 591
MluCI AATT 3 cut(s) 13, 34, 429
MluNI TGGCCA 1 cut(s) 591
MlyI GAGTC 1 cut(s) 393
MnlI CCTC 6 cut(s) 58, 97, 195, 364, 367, 404
Mox20I TGGCCA 1 cut(s) 591
MscI TGGCCA 1 cut(s) 591
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 1 cut(s) 591
MspI CCGG 1 cut(s) 188
MunI CAATTG 1 cut(s) 429
Mva1269I GAATGC 3 cut(s) 224, 390, 601
NdeI CATATG 1 cut(s) 175
NdeII GATC 4 cut(s) 83, 139, 508, 633
NlaIII CATG 2 cut(s) 149, 197
NlaIV GGNNCC 2 cut(s) 69, 276
NmuCI GTSAC 2 cut(s) 149, 304
NsbI TGCGCA 1 cut(s) 389
NspI RCATGY 1 cut(s) 197
PctI GAATGC 3 cut(s) 224, 390, 601
PfeI GAWTC 3 cut(s) 41, 209, 460
PinAI ACCGGT 1 cut(s) 187
PkrI GCNGC 3 cut(s) 126, 223, 620
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 69, 276
PsuI RGATCY 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 147
SatI GCNGC 3 cut(s) 125, 222, 619
Sau3AI GATC 4 cut(s) 83, 139, 508, 633
SchI GAGTC 1 cut(s) 393
SfaNI GCATC 1 cut(s) 530
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 3 cut(s) 13, 34, 429
SsiI CCGC 2 cut(s) 543, 619
SspMI CTAG 1 cut(s) 444
StyI CCWWGG 1 cut(s) 550
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 9, 268
TasI AATT 3 cut(s) 13, 34, 429
TauI GCSGC 1 cut(s) 621
TfiI GAWTC 3 cut(s) 41, 209, 460
TscAI CASTG 3 cut(s) 64, 299, 603
TseFI GTSAC 2 cut(s) 149, 304
TseI GCWGC 2 cut(s) 124, 221
Tsp45I GTSAC 2 cut(s) 149, 304
TspDTI ATGAA 4 cut(s) 198, 300, 405, 498
TspGWI ACGGA 1 cut(s) 233
TspRI CASTG 3 cut(s) 64, 299, 603
XapI RAATTY 1 cut(s) 34
XceI RCATGY 1 cut(s) 197
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.