Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008348

Physical Location & Seq

Genomic Coordinates Forward (+)

31561656 .. 31564642

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G333400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGACAGTTTCCAGTGCCTTCAACGCATTCAAGTCATCTAAATCCGTCGTCTGGAAATCCGTAAACACACTCTCAGTCTCTACTGGTAGGCTTCAGCAAACCATAGCGGGATGCATAGAGCGGAAGGGGAAAGGCTTGCACAGTGGAAAGGTCTCCACGGTGAAATTGTGGCCAGAGCTTGTCAGCAAAGGAAGGTACTTTGATTTTCAGCCCAATGTGATACGAGCTTCGATTGAGTTTGCTGAGGAATCGCCTCTGTGCACCACTCTCTGTAAAGATGGGGTCAAAATTCGAACGGTTGAGCACTTGCTTTCTGCTTTGGAAGCTATGGAGGTTGATAATTGCCGGATTGAGATAAAGAACTCAGACCCCGAAGATTTCGATCTTGAGGTTCCTATTTTTGATGGGTCAGCAAGTGAGTGGGTAGAGGCTATAGAACTAGTTGGCTTAAAAGAGGCAACAGATCATTGTGGCAACTGTTGTGAGAAGATGGCAGCATATGTGAATGAACCAGTGCATGTGTGGAGGAATGATTCTTTTGTTGCTGCATTTCCATCACCAGAAATTCGTATCACTTACGGGATCGACTTTCGACAGGTGCAGGCTATTGGCTGCCAGTGGTTTTCTGTGACCTCCTTGGATAACTCTTTCTATTCCAAGCACATTGCTTTGTCAAGAACCTTTTGCATTTATGAGGAGGTGGAGCGAATGCGGAATGCAGGACTCATAAAAGGGGGTGGATTAGAAAATGCACTTGTTTGTAGTGCTAGTAAAGGTTGGTTGAACCCACCACTGCGTTTTCCAGATGAACCTTGTCGCCATAAGGTCTTAGATCTTATCGGCGATGCTTCCCTGTTTGCAAGGTTTGGCAGTCAAGGGTTTCCAGTGGCACATATAGTGGCATACAAGGGTAGCCATGCACTGCATTCTGATTTTGTTCGCCGGCTATCAGGAATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008759 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxC

Protein Analysis

321

Amino Acids

35.49

Weight (kDa)

6.32

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24793 AT1G24793 AT1G25054 AT1G25145 AT1G25210 AT1G25210
fragaria_vesca	FvH4_4g33550
malus_domestica	MD13G1020300.v1.1
prunus_persica	Prupe.1G333400_v2.0.a1
pyrus_communis	pycom13g01710
rosa_chinensis	RchiOBHm_Chr7g0235121
rosa_laevigata	RLG00000001181
rosa_multiflora	Rmu_sc0002239.1_g000018 Rmu_sc0028222.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226270
rosa_rugosa	Rorug07G0287700 Rorug07G0287700 Rorug07G0287800
rosa_samantha	Rh7AG442700 Rh7BG415300 Rh7CG463500 Rh7DG432400
rosa_wichuraiana	Rw7G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	121
AciI	CCGC	3 cut(s)	107, 121, 712
AclWI	GGATC	1 cut(s)	590
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	288, 564
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	22, 31, 784
AhlI	ACTAGT	1 cut(s)	439
AluBI	AGCT	3 cut(s)	178, 227, 326
AluI	AGCT	3 cut(s)	178, 227, 326
Alw21I	GWGCWC	2 cut(s)	263, 306
Alw26I	GTCTC	2 cut(s)	82, 157
Alw44I	GTGCAC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	1 cut(s)	170
ApaLI	GTGCAC	1 cut(s)	259
ApeKI	GCWGC	3 cut(s)	494, 545, 612
ApoI	RAATTY	2 cut(s)	288, 564
AsuHPI	GGTGA	2 cut(s)	172, 549
AsuII	TTCGAA	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	172
Bbv12I	GWGCWC	2 cut(s)	263, 306
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	3 cut(s)	506, 532, 599
BccI	CCATC	4 cut(s)	272, 398, 484, 562
BcoDI	GTCTC	2 cut(s)	82, 157
BcuI	ACTAGT	1 cut(s)	439
BfaI	CTAG	2 cut(s)	440, 768
BfmI	CTRYAG	1 cut(s)	432
BglII	AGATCT	1 cut(s)	832
BisI	GCNGC	3 cut(s)	495, 546, 613
BlsI	GCNGC	3 cut(s)	496, 547, 614
BmiI	GGNNCC	1 cut(s)	393
BmsI	GCATC	2 cut(s)	101, 835
Bpu10I	CCTNAGC	1 cut(s)	243
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	1 cut(s)	407
BsaBI	GATNNNNATC	1 cut(s)	381
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	156, 636
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	942
Bse1I	ACTGG	5 cut(s)	12, 88, 512, 616, 884
Bse3DI	GCAATG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	381
BseDI	CCNNGG	2 cut(s)	156, 636
BseGI	GGATG	1 cut(s)	116
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	3 cut(s)	87, 234, 378
BseNI	ACTGG	5 cut(s)	12, 88, 512, 616, 884
BseRI	GAGGAG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	263
BseXI	GCAGC	3 cut(s)	506, 532, 599
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	1 cut(s)	172
BsiHKAI	GWGCWC	2 cut(s)	263, 306
BsiSI	CCGG	2 cut(s)	346, 943
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	2 cut(s)	82, 157
BsmI	GAATGC	4 cut(s)	26, 714, 721, 925
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	157
Bsp119I	TTCGAA	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	263, 306
Bsp143I	GATC	4 cut(s)	382, 463, 582, 832
BspACI	CCGC	3 cut(s)	107, 121, 712
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	3 cut(s)	86, 235, 377
BspLI	GGNNCC	1 cut(s)	393
BspPI	GGATC	1 cut(s)	590
BspT104I	TTCGAA	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	157
BsrBI	CCGCTC	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	1 cut(s)	942
BsrI	ACTGG	5 cut(s)	12, 88, 512, 616, 884
BssAI	RCCGGY	1 cut(s)	942
BssECI	CCNNGG	2 cut(s)	156, 636
BssMI	GATC	4 cut(s)	382, 463, 582, 832
BssT1I	CCWWGG	1 cut(s)	636
Bst4CI	ACNGT	5 cut(s)	7, 143, 160, 298, 479
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	3 cut(s)	137, 603, 944
BstDEI	CTNAG	4 cut(s)	73, 243, 364, 829
BstDSI	CCRYGG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	116
BstKTI	GATC	4 cut(s)	385, 466, 585, 835
BstMAI	GTCTC	2 cut(s)	82, 157
BstMBI	GATC	4 cut(s)	382, 463, 582, 832
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 323
BstNSI	RCATGY	1 cut(s)	521
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	263
BstV1I	GCAGC	3 cut(s)	506, 532, 599
BstX2I	RGATCY	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	832
BsuRI	GGCC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	156
BtgZI	GCGATG	1 cut(s)	858
BtsCI	GGATG	1 cut(s)	116
BtsI	GCAGTG	2 cut(s)	791, 920
BtsIMutI	CAGTG	7 cut(s)	19, 148, 519, 623, 791, 891, 920
Cac8I	GCNNGC	3 cut(s)	137, 603, 944
Cfr10I	RCCGGY	1 cut(s)	942
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	2 cut(s)	518, 917
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	4 cut(s)	73, 243, 364, 829
DpnI	GATC	4 cut(s)	384, 465, 584, 834
DpnII	GATC	4 cut(s)	382, 463, 582, 832
EaeI	YGGCCR	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	636
Eco31I	GGTCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	636
EcoT22I	ATGCAT	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	636
FaeI	CATG	2 cut(s)	521, 920
FatI	CATG	2 cut(s)	517, 916
FauI	CCCGC	1 cut(s)	100
FauNDI	CATATG	1 cut(s)	499
Fnu4HI	GCNGC	3 cut(s)	495, 546, 613
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	3 cut(s)	495, 546, 613
FspBI	CTAG	2 cut(s)	440, 768
GluI	GCNGC	3 cut(s)	495, 546, 613
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	2 cut(s)	346, 943
Hin1II	CATG	2 cut(s)	521, 920
HinfI	GANTC	3 cut(s)	248, 533, 723
HpaII	CCGG	2 cut(s)	346, 943
HphI	GGTGA	2 cut(s)	172, 549
Hpy166II	GTNNAC	2 cut(s)	64, 261
Hpy188I	TCNGA	2 cut(s)	367, 931
Hpy188III	TCNNGA	5 cut(s)	52, 386, 675, 803, 951
Hpy8I	GTNNAC	2 cut(s)	64, 261
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	28, 118, 186
HpyCH4III	ACNGT	5 cut(s)	7, 143, 160, 298, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 323
HpyF3I	CTNAG	4 cut(s)	73, 243, 364, 829
Hsp92II	CATG	2 cut(s)	521, 920
KroI	GCCGGC	1 cut(s)	942
KroNI	GCCGGC	1 cut(s)	944
Kzo9I	GATC	4 cut(s)	382, 463, 582, 832
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	3 cut(s)	506, 532, 599
LweI	GCATC	2 cut(s)	101, 835
MaeI	CTAG	2 cut(s)	440, 768
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	4 cut(s)	384, 465, 584, 834
MbiI	CCGCTC	1 cut(s)	121
MboI	GATC	4 cut(s)	382, 463, 582, 832
MboII	GAAGA	2 cut(s)	386, 499
MflI	RGATCY	1 cut(s)	832
MhlI	GDGCHC	2 cut(s)	263, 306
MlsI	TGGCCA	1 cut(s)	172
MluCI	AATT	5 cut(s)	164, 288, 340, 564, 954
MluNI	TGGCCA	1 cut(s)	172
MlyI	GAGTC	1 cut(s)	717
Mox20I	TGGCCA	1 cut(s)	172
Mph1103I	ATGCAT	1 cut(s)	116
MroNI	GCCGGC	1 cut(s)	942
MscI	TGGCCA	1 cut(s)	172
MseI	TTAA	1 cut(s)	449
Msp20I	TGGCCA	1 cut(s)	172
MspI	CCGG	2 cut(s)	346, 943
Mva1269I	GAATGC	4 cut(s)	26, 714, 721, 925
MwoI	GCNNNNNNNGC	2 cut(s)	23, 323
NaeI	GCCGGC	1 cut(s)	944
NdeI	CATATG	1 cut(s)	499
NdeII	GATC	4 cut(s)	382, 463, 582, 832
NgoMIV	GCCGGC	1 cut(s)	942
NlaIII	CATG	2 cut(s)	521, 920
NlaIV	GGNNCC	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	628
NsiI	ATGCAT	1 cut(s)	116
NspI	RCATGY	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	292
PctI	GAATGC	4 cut(s)	26, 714, 721, 925
PdiI	GCCGGC	1 cut(s)	944
PfeI	GAWTC	2 cut(s)	248, 533
PkrI	GCNGC	3 cut(s)	496, 547, 614
PleI	GAGTC	1 cut(s)	717
PpsI	GAGTC	1 cut(s)	717
PspN4I	GGNNCC	1 cut(s)	393
PsuI	RGATCY	1 cut(s)	832
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SaqAI	TTAA	1 cut(s)	449
SatI	GCNGC	3 cut(s)	495, 546, 613
Sau3AI	GATC	4 cut(s)	382, 463, 582, 832
SchI	GAGTC	1 cut(s)	717
SduI	GDGCHC	2 cut(s)	263, 306
SfaNI	GCATC	2 cut(s)	101, 835
SfcI	CTRYAG	1 cut(s)	432
SfuI	TTCGAA	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SpeI	ACTAGT	1 cut(s)	439
Sse9I	AATT	5 cut(s)	164, 288, 340, 564, 954
SsiI	CCGC	3 cut(s)	107, 121, 712
SspMI	CTAG	2 cut(s)	440, 768
StyI	CCWWGG	1 cut(s)	636
TaaI	ACNGT	5 cut(s)	7, 143, 160, 298, 479
TaqI	TCGA	5 cut(s)	230, 292, 381, 585, 592
TasI	AATT	5 cut(s)	164, 288, 340, 564, 954
TfiI	GAWTC	2 cut(s)	248, 533
Tru1I	TTAA	1 cut(s)	449
Tru9I	TTAA	1 cut(s)	449
TscAI	CASTG	7 cut(s)	19, 148, 519, 623, 798, 891, 927
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	3 cut(s)	494, 545, 612
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	2 cut(s)	522, 822
TspGWI	ACGGA	2 cut(s)	34, 49
TspRI	CASTG	7 cut(s)	19, 148, 519, 623, 798, 891, 927
VneI	GTGCAC	1 cut(s)	259
XapI	RAATTY	2 cut(s)	288, 564
XceI	RCATGY	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	519
XspI	CTAG	2 cut(s)	440, 768
Zsp2I	ATGCAT	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.