Rh7BG415300

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008348
Physical Location & Seq
Reverse (-)
46833698 .. 46837409
3712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG415300.1

Sequence Viewer

Length: 1011 bp
ATGACAGTCTCCGCTGCATTCAAGTCTTCCAAACTCATCTCCTGGAAATCGACCGGTCGGCTTCAGCAGACCTTAGCGGGATGCATAGAGCGCGCGGGAAAGAGCTTGCACAGCGGCAGGGTCTCCACGGTGAAGTTGTGGCCGGAGCTCGCCGGAAAAGGGAGGTACTTTGACTTTCGGTCAACTCTGATTCGAGCTTCGATCGAGTTCGCTGAGGATTCGCCTCTCTGCACCACTCTCTGTAAAGATGGGCTGAAAATTCCAACTGTTGAGCACTTGCTTTCGGCTCTGGAAGCTATGGAGGTCGATAATTGCAGGATTGAGATTGAGAATTCGGATTCCCAAGATGATTGCAGTGTTGAGGTTCCTATCTTTGATGGATCAGCAAGAGAGTGGGTGGAGGCGATAGAACAAGTTGGGCTGCAAGTCGCAACAGATCATCATGGTGACTGTTGTGAAAAGATGATAGCATATGTGAATGAACCGGTGCATGTGTGGAGGAATGATTCTTTTGTTGCTGCATTCCCATCAGAAGAAATCCGTATCACTTATGGGATTGACTTTCGACAGGTGCCAGCCATTGGCAGCCAGTGGTTTTCTGTGACTTTATTGGATAAATCTTTATATTCCAAGCAGATAGCTTTGTCAAGAACCTTTTGCATTTATGAGGAGGTAGAGCGAATGCGCAATGCAGGACTCATAAAAGGAGGTTCGTTAGAAAATGCAATTGTTTGTAGTGCTAGTAAAGGTTGGTTGAATCCACCACTTCGTTTTCAAGATGAACCTTGTCGTCATAAGGTCTTAGATCTTATCGGTGATGTTTCGCTTTTTGCAAGAAGTGGTAGCCAAGGGCTTCCCGTGGCACACTTAGTGGCTTACAAGGTTTGTATTGATTACATCAGGTTATTTCATGATTTTGGTAGACTAGAACAAAATGGTTATGAGATATGCAATAAAGTTGCTGTTTGTTTCTTTGCATGTCACACAGGGTGGCCACACACTGCATTCTGA

Protein Analysis

336

Amino Acids

37.55

Weight (kDa)

5.83

Isoelectric Point (pI)

41.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxC PF03331 22 - 294 8.8e-75 UDP-3-O-acyl N-acetylglycosamine deacetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 686
AccB1I GGYRCC 1 cut(s) 571
AccB7I CCANNNNNTGG 1 cut(s) 581
AccI GTMKAC 1 cut(s) 922
AccII CGCG 2 cut(s) 93, 95
AciI CCGC 4 cut(s) 12, 77, 95, 114
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 2 cut(s) 140, 992
AcsI RAATTY 2 cut(s) 258, 331
AcuI CTGAAG 1 cut(s) 47
AdeI CACNNNGTG 2 cut(s) 871, 990
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 159, 581
AgeI ACCGGT 2 cut(s) 53, 484
AgsI TTSAA 3 cut(s) 22, 757, 776
AhdI GACNNNNNGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 5 cut(s) 105, 148, 197, 296, 641
AluI AGCT 5 cut(s) 105, 148, 197, 296, 641
Alw21I GWGCWC 2 cut(s) 150, 276
Alw26I GTCTC 2 cut(s) 13, 127
AlwI GGATC 1 cut(s) 388
AoxI GGCC 2 cut(s) 140, 992
ApeKI GCWGC 4 cut(s) 14, 421, 518, 585
ApoI RAATTY 2 cut(s) 258, 331
AsiGI ACCGGT 2 cut(s) 53, 484
AspLEI GCGC 3 cut(s) 93, 95, 687
AsuHPI GGTGA 3 cut(s) 142, 458, 827
BalI TGGCCA 1 cut(s) 994
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 150, 276
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 3 cut(s) 408, 505, 597
BccI CCATC 3 cut(s) 242, 371, 535
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 13, 127
BfaI CTAG 2 cut(s) 741, 926
BglII AGATCT 1 cut(s) 805
BisI GCNGC 5 cut(s) 15, 115, 422, 519, 586
BlsI GCNGC 5 cut(s) 16, 116, 423, 520, 587
Bme1390I CCNGG 1 cut(s) 43
BmeRI GACNNNNNGTC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 366, 573
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 73, 213
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 3 cut(s) 126, 847, 858
BsaWI WCCGGW 2 cut(s) 53, 484
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 581
Bse118I RCCGGY 2 cut(s) 53, 484
Bse1I ACTGG 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 694
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 126, 847, 858
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 159, 581
BseMI GCAATG 1 cut(s) 694
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 589
BsePI GCGCGC 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 683
BseXI GCAGC 3 cut(s) 408, 505, 597
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 2 cut(s) 93, 95
Bsh1285I CGRYCG 3 cut(s) 54, 58, 204
BshFI GGCC 2 cut(s) 142, 994
BshNI GGYRCC 1 cut(s) 571
BshTI ACCGGT 2 cut(s) 53, 484
BsiEI CGRYCG 3 cut(s) 54, 58, 204
BsiHKAI GWGCWC 2 cut(s) 150, 276
BsiSI CCGG 4 cut(s) 54, 143, 153, 485
BslI CCNNNNNNNGG 2 cut(s) 159, 581
BsmAI GTCTC 2 cut(s) 13, 127
BsmI GAATGC 4 cut(s) 17, 521, 687, 1004
BsnI GGCC 2 cut(s) 142, 994
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 150, 276
Bsp143I GATC 4 cut(s) 201, 380, 436, 805
BspACI CCGC 4 cut(s) 12, 77, 95, 114
BspANI GGCC 2 cut(s) 142, 994
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 2 cut(s) 93, 95
BspHI TCATGA 1 cut(s) 910
BspLI GGNNCC 2 cut(s) 366, 573
BspPI GGATC 1 cut(s) 388
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 694
BsrFI RCCGGY 2 cut(s) 53, 484
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 2 cut(s) 53, 484
BssECI CCNNGG 3 cut(s) 126, 847, 858
BssHII GCGCGC 1 cut(s) 91
BssMI GATC 4 cut(s) 201, 380, 436, 805
BssT1I CCWWGG 1 cut(s) 847
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 4 cut(s) 7, 130, 268, 452
BstC8I GCNNGC 4 cut(s) 93, 107, 150, 576
BstDEI CTNAG 4 cut(s) 73, 213, 802, 868
BstDSI CCRYGG 2 cut(s) 126, 858
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 93, 95
BstHHI GCGC 3 cut(s) 93, 95, 687
BstKTI GATC 4 cut(s) 204, 383, 439, 808
BstMAI GTCTC 2 cut(s) 13, 127
BstMBI GATC 4 cut(s) 201, 380, 436, 805
BstMCI CGRYCG 3 cut(s) 54, 58, 204
BstMWI GCNNNNNNNGC 3 cut(s) 90, 111, 293
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 2 cut(s) 494, 981
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 2 cut(s) 93, 95
BstV1I GCAGC 3 cut(s) 408, 505, 597
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 805
BstYI RGATCY 1 cut(s) 805
BsuRI GGCC 2 cut(s) 142, 994
BtgI CCRYGG 2 cut(s) 126, 858
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 2 cut(s) 361, 999
BtsIMutI CAGTG 3 cut(s) 361, 596, 999
Cac8I GCNNGC 4 cut(s) 93, 107, 150, 576
CciI TCATGA 1 cut(s) 910
CfoI GCGC 3 cut(s) 93, 95, 687
Cfr10I RCCGGY 2 cut(s) 53, 484
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 2 cut(s) 53, 484
CviAII CATG 4 cut(s) 443, 491, 911, 978
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 4 cut(s) 73, 213, 802, 868
DpnI GATC 4 cut(s) 203, 382, 438, 807
DpnII GATC 4 cut(s) 201, 380, 436, 805
DraIII CACNNNGTG 2 cut(s) 871, 990
DriI GACNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 2 cut(s) 140, 992
Eam1105I GACNNNNNGTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 847
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 41
EcoT14I CCWWGG 1 cut(s) 847
EcoT22I ATGCAT 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 847
FaeI CATG 4 cut(s) 446, 494, 914, 981
FatI CATG 4 cut(s) 442, 490, 910, 977
FauI CCCGC 2 cut(s) 70, 88
FauNDI CATATG 1 cut(s) 472
FblI GTMKAC 1 cut(s) 922
Fnu4HI GCNGC 5 cut(s) 15, 115, 422, 519, 586
FokI GGATG 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 5 cut(s) 15, 115, 422, 519, 586
FspBI CTAG 2 cut(s) 741, 926
FspI TGCGCA 1 cut(s) 686
GlaI GCGC 3 cut(s) 92, 94, 686
GluI GCNGC 5 cut(s) 15, 115, 422, 519, 586
HaeIII GGCC 2 cut(s) 142, 994
HapII CCGG 4 cut(s) 54, 143, 153, 485
HhaI GCGC 3 cut(s) 93, 95, 687
Hin1II CATG 4 cut(s) 446, 494, 914, 981
Hin6I GCGC 3 cut(s) 91, 93, 685
HinP1I GCGC 3 cut(s) 91, 93, 685
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 6 cut(s) 190, 218, 338, 506, 696, 757
HpaII CCGG 4 cut(s) 54, 143, 153, 485
HphI GGTGA 3 cut(s) 142, 458, 827
Hpy166II GTNNAC 2 cut(s) 183, 923
Hpy188I TCNGA 4 cut(s) 189, 337, 532, 1010
Hpy188III TCNNGA 4 cut(s) 290, 648, 776, 911
Hpy8I GTNNAC 2 cut(s) 183, 923
HpyCH4III ACNGT 4 cut(s) 7, 130, 268, 452
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 111, 293
HpyF3I CTNAG 4 cut(s) 73, 213, 802, 868
Hsp92II CATG 4 cut(s) 446, 494, 914, 981
HspAI GCGC 3 cut(s) 91, 93, 685
Kzo9I GATC 4 cut(s) 201, 380, 436, 805
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 3 cut(s) 408, 505, 597
LweI GCATC 1 cut(s) 71
MaeI CTAG 2 cut(s) 741, 926
MaeIII GTNAC 3 cut(s) 446, 601, 980
MalI GATC 4 cut(s) 203, 382, 438, 807
MboI GATC 4 cut(s) 201, 380, 436, 805
MboII GAAGA 2 cut(s) 18, 545
MfeI CAATTG 1 cut(s) 726
MflI RGATCY 1 cut(s) 805
MhlI GDGCHC 2 cut(s) 150, 276
MlsI TGGCCA 1 cut(s) 994
MluCI AATT 4 cut(s) 258, 310, 331, 726
MluNI TGGCCA 1 cut(s) 994
MlyI GAGTC 1 cut(s) 690
MmeI TCCRAC 1 cut(s) 287
Mox20I TGGCCA 1 cut(s) 994
Mph1103I ATGCAT 1 cut(s) 86
MscI TGGCCA 1 cut(s) 994
MslI CAYNNNNRTG 1 cut(s) 444
Msp20I TGGCCA 1 cut(s) 994
MspA1I CMGCKG 2 cut(s) 14, 114
MspI CCGG 4 cut(s) 54, 143, 153, 485
MspR9I CCNGG 1 cut(s) 43
MunI CAATTG 1 cut(s) 726
Mva1269I GAATGC 4 cut(s) 17, 521, 687, 1004
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 2 cut(s) 93, 95
MwoI GCNNNNNNNGC 3 cut(s) 90, 111, 293
NdeI CATATG 1 cut(s) 472
NdeII GATC 4 cut(s) 201, 380, 436, 805
NlaIII CATG 4 cut(s) 446, 494, 914, 981
NlaIV GGNNCC 2 cut(s) 366, 573
NmuCI GTSAC 3 cut(s) 446, 601, 980
NsbI TGCGCA 1 cut(s) 686
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 2 cut(s) 494, 981
PagI TCATGA 1 cut(s) 910
PauI GCGCGC 1 cut(s) 91
PctI GAATGC 4 cut(s) 17, 521, 687, 1004
PfeI GAWTC 5 cut(s) 190, 218, 338, 506, 757
PflMI CCANNNNNTGG 1 cut(s) 581
PfoI TCCNGGA 1 cut(s) 41
PinAI ACCGGT 2 cut(s) 53, 484
PkrI GCNGC 5 cut(s) 16, 116, 423, 520, 587
Ple19I CGATCG 1 cut(s) 204
PleI GAGTC 1 cut(s) 690
PpsI GAGTC 1 cut(s) 690
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 366, 573
PsuI RGATCY 1 cut(s) 805
PteI GCGCGC 1 cut(s) 91
PvuI CGATCG 1 cut(s) 204
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 150
SatI GCNGC 5 cut(s) 15, 115, 422, 519, 586
Sau3AI GATC 4 cut(s) 201, 380, 436, 805
SchI GAGTC 1 cut(s) 690
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 2 cut(s) 150, 276
SfaNI GCATC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 4 cut(s) 258, 310, 331, 726
SsiI CCGC 4 cut(s) 12, 77, 95, 114
SspMI CTAG 2 cut(s) 741, 926
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 1 cut(s) 847
TaaI ACNGT 4 cut(s) 7, 130, 268, 452
TaqI TCGA 6 cut(s) 50, 193, 200, 204, 306, 565
TaqII GACCGA 1 cut(s) 168
TasI AATT 4 cut(s) 258, 310, 331, 726
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 5 cut(s) 190, 218, 338, 506, 757
TscAI CASTG 3 cut(s) 361, 596, 1006
TseFI GTSAC 3 cut(s) 446, 601, 980
TseI GCWGC 4 cut(s) 14, 421, 518, 585
Tsp45I GTSAC 3 cut(s) 446, 601, 980
TspDTI ATGAA 3 cut(s) 495, 795, 899
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 3 cut(s) 361, 596, 1006
Van91I CCANNNNNTGG 1 cut(s) 581
XapI RAATTY 2 cut(s) 258, 331
XceI RCATGY 2 cut(s) 494, 981
XmiI GTMKAC 1 cut(s) 922
XspI CTAG 2 cut(s) 741, 926
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.