Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008348

Physical Location & Seq

Genomic Coordinates Forward (+)

28004124 .. 28005847

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0287800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGAGACCTCTCTCAGATACGGTGGAGATTCCAAAGCTCTCAGAATCCACGCCAAGCAGAAGTTACCTCTCGATTCCAAAACCCGTTTGCAGGTTCATGGAGAGCTAGACACTAGAGTTGGAGCTCCAACTTATTTTACTGCTCTAGTTAGGCGCTTCTACCCAGATTTTTACACTAGCATTGGAGCTGGATTGCATTATGATAAGCGTGATAAGCTTCGCTACACTCTCCGCGGGAAGAAGGCATTCCCTGTGACGACGGATGGCCTCTTGAGCTTTAGTGTTAAGGGAAAATATGATCTTGACAAAGATTTTAGAGAGAGAGGATCCAAAGGAGCAGCTGAATTGTCCTGGTGCATTTTAAACTTTCAGAAGGACCAAGATGTCAGGTTTAAAGTTGGGTATGACTTGATTGAAAAGGTTCCATATGCTCAGATCAGGGAAAACAATTGGACACTCAATGCTGATTTTAATGGTAGATGGAATGTGAGATTTGACTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008759 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxC

Protein Analysis

167

Amino Acids

19.39

Weight (kDa)

9.63

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24793 AT1G24793 AT1G25054 AT1G25145 AT1G25210 AT1G25210
fragaria_vesca	FvH4_4g33550
malus_domestica	MD13G1020300.v1.1
prunus_persica	Prupe.1G333400_v2.0.a1
pyrus_communis	pycom13g01710
rosa_chinensis	RchiOBHm_Chr7g0235121
rosa_laevigata	RLG00000001181
rosa_multiflora	Rmu_sc0002239.1_g000018 Rmu_sc0028222.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226270
rosa_rugosa	Rorug07G0287700 Rorug07G0287700 Rorug07G0287800
rosa_samantha	Rh7AG442700 Rh7BG415300 Rh7CG463500 Rh7DG432400
rosa_wichuraiana	Rw7G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	82
AccII	CGCG	1 cut(s)	234
AciI	CCGC	2 cut(s)	232, 234
AclWI	GGATC	2 cut(s)	321, 334
AfiI	CCNNNNNNNGG	1 cut(s)	91
AgsI	TTSAA	1 cut(s)	416
AjnI	CCWGG	1 cut(s)	350
AluBI	AGCT	7 cut(s)	38, 106, 125, 188, 217, 276, 341
AluI	AGCT	7 cut(s)	38, 106, 125, 188, 217, 276, 341
Alw21I	GWGCWC	1 cut(s)	127
AlwI	GGATC	2 cut(s)	321, 334
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	338
Asp700I	GAANNNNTTC	2 cut(s)	245, 420
AspLEI	GCGC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	376
BamHI	GGATCC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	127
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	257, 474
BciT130I	CCWGG	1 cut(s)	352
BfaI	CTAG	4 cut(s)	107, 114, 146, 177
BfoI	RGCGCY	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	352
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmiI	GGNNCC	2 cut(s)	328, 423
BmrFI	CCNGG	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	352
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	268
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	3 cut(s)	28, 55, 446
BseXI	GCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	267
BsiHKAI	GWGCWC	1 cut(s)	127
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmI	GAATGC	1 cut(s)	245
BsnI	GGCC	1 cut(s)	267
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	298, 326, 435
BspACI	CCGC	2 cut(s)	232, 234
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	3 cut(s)	27, 54, 445
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	328, 423
BspMI	ACCTGC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	321, 334
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	298, 326, 435
Bst2UI	CCWGG	1 cut(s)	352
Bst4CI	ACNGT	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	14, 41, 432
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	1 cut(s)	268
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	3 cut(s)	301, 329, 438
BstMBI	GATC	3 cut(s)	298, 326, 435
BstMWI	GCNNNNNNNGC	2 cut(s)	214, 273
BstNI	CCWGG	1 cut(s)	352
BstSCI	CCNGG	1 cut(s)	350
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	326
BsuRI	GGCC	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	156
Cfr13I	GGNCC	1 cut(s)	376
Cfr42I	CCGCGG	1 cut(s)	235
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	8 cut(s)	38, 106, 125, 188, 217, 267, 276, 341
CviKI_1	RGCY	8 cut(s)	38, 106, 125, 188, 217, 267, 276, 341
DdeI	CTNAG	3 cut(s)	14, 41, 432
DpnI	GATC	3 cut(s)	300, 328, 437
DpnII	GATC	3 cut(s)	298, 326, 435
DraI	TTTAAA	2 cut(s)	363, 394
DrdI	GACNNNNNNGTC	1 cut(s)	383
DseDI	GACNNNNNNGTC	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	125
EcoICRI	GAGCTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	127
FaeI	CATG	1 cut(s)	101
FaiI	YATR	6 cut(s)	99, 201, 297, 405, 427, 429
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	227
FauNDI	CATATG	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	275
FriOI	GRGCYC	1 cut(s)	127
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	4 cut(s)	107, 114, 146, 177
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	267
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	101
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	3 cut(s)	29, 45, 74
Hpy188I	TCNGA	4 cut(s)	17, 44, 372, 435
Hpy188III	TCNNGA	3 cut(s)	71, 271, 302
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	235, 367
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	91, 196, 357
HpyF10VI	GCNNNNNNNGC	2 cut(s)	214, 273
HpyF3I	CTNAG	3 cut(s)	14, 41, 432
Hsp92II	CATG	1 cut(s)	101
HspAI	GCGC	1 cut(s)	154
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	298, 326, 435
LmnI	GCTCC	4 cut(s)	122, 130, 185, 335
LpnPI	CCDG	8 cut(s)	77, 174, 177, 264, 337, 364, 373, 424
Lsp1109I	GCAGC	1 cut(s)	350
MaeI	CTAG	4 cut(s)	107, 114, 146, 177
MaeIII	GTNAC	2 cut(s)	63, 253
MalI	GATC	3 cut(s)	300, 328, 437
MboI	GATC	3 cut(s)	298, 326, 435
MboII	GAAGA	1 cut(s)	250
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	1 cut(s)	326
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	2 cut(s)	344, 448
MmeI	TCCRAC	2 cut(s)	100, 152
MnlI	CCTC	4 cut(s)	19, 78, 278, 317
MroXI	GAANNNNTTC	2 cut(s)	245, 420
MseI	TTAA	4 cut(s)	285, 362, 393, 471
MspA1I	CMGCKG	2 cut(s)	234, 341
MspR9I	CCNGG	1 cut(s)	352
MunI	CAATTG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	352
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	214, 273
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	3 cut(s)	298, 326, 435
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	328, 423
NmuCI	GTSAC	1 cut(s)	253
PctI	GAATGC	1 cut(s)	245
PdmI	GAANNNNTTC	2 cut(s)	245, 420
PfeI	GAWTC	3 cut(s)	29, 45, 74
PkrI	GCNGC	1 cut(s)	340
Psp124BI	GAGCTC	1 cut(s)	127
Psp6I	CCWGG	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	328, 423
PspPI	GGNCC	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	326
PvuII	CAGCTG	1 cut(s)	341
SacI	GAGCTC	1 cut(s)	127
SacII	CCGCGG	1 cut(s)	235
SaqAI	TTAA	4 cut(s)	285, 362, 393, 471
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	3 cut(s)	298, 326, 435
Sau96I	GGNCC	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	352
SduI	GDGCHC	1 cut(s)	127
Sfr303I	CCGCGG	1 cut(s)	235
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
Sse9I	AATT	2 cut(s)	344, 448
SsiI	CCGC	2 cut(s)	232, 234
SspMI	CTAG	4 cut(s)	107, 114, 146, 177
SstI	GAGCTC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	72
TasI	AATT	2 cut(s)	344, 448
TfiI	GAWTC	3 cut(s)	29, 45, 74
Tru1I	TTAA	4 cut(s)	285, 362, 393, 471
Tru9I	TTAA	4 cut(s)	285, 362, 393, 471
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	86
TspGWI	ACGGA	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	376
XmnI	GAANNNNTTC	2 cut(s)	245, 420
XspI	CTAG	4 cut(s)	107, 114, 146, 177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.