MD13G1020300.v1.1

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0008348
Physical Location & Seq
Reverse (-)
1275637 .. 1278078
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1020300.v1.1.491

Sequence Viewer

Length: 942 bp
ATGACACTCTCCAGTGCCTTCAACGCATTCAAGTCCTCCAAATCCATCTTCTGGAAATCTACCGGTAGGCTTCAGCAGACCTTAGCGGGATGCATAGAGCGGAAAGGGAAGAGCTTGCACAGCGGCAAGGTCTCCGCCGTGAAATTGTGGCCGGATCACGCCGGCAAAGGGAGATACTTTGTTTGCCGGTCAAATGCGATTCGAGCTTCGGTTGAGTTTGCCGAGGAATCGCCTCTCTGCACCACTCTCTGTAAAGATGGGGTCAAAATTCGGACAGTTGAGCATTTGCTTTCGGCTTTGGAAGCTATGGAGGTTGACAATTGCCGGATTGAGGTCAAGAACTCGGACCCCGAAGATATCGATGTTGAGGTTCCTATTTTTGATGGGTCAGCAAGAGAATGGGTGGAGGCTATAAAACAAGTTGGTCTAAAAGAGGCAACAGATGAGCATGGCAACTGTTGTGAAAAGATGGCGGCACATATGAACGAGCCAGTTCATGTCTGGAGGAATAATTCTTTTGTAGCTGCTTTCCCATCACCAGAAATCCGTATCACTTACGGGATTGACTTTCCGCAGGTGGATGCTATTGGCTGCCAGTGGTTTTCTGTCACCTCCTTGGATAACTCTTTCTATTCCAAGCAGATTGCTTTGTCAAGAACCTTTTGCATTTACGAGGAGGTGGAGCGAATGCGCGAGGCAGGACTCATAAAAGGTGGTGGGTTAGAAAACGCAATTGTTTGCAGTGCTAGTAAGGGTTGGTTGAACCCACCGCTGCGTTTTCCAGATGAACCTTGTCGACACAAGGTCTTAGATCTTATCGGCGACCTTTCCCTTTTCGCAAGGTTTGGAAGCCAAGGGCTTCCAGTGGCACATATAGTGGCATACAAGGGTGGCCATGCACTGCATTCCGATTTAGTTCGCCGGCTGTCGGGAACTATATAA

Protein Analysis

314

Amino Acids

34.65

Weight (kDa)

6.79

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxC PF03331 25 - 309 4e-82 UDP-3-O-acyl N-acetylglycosamine deacetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 565
Acc36I ACCTGC 1 cut(s) 565
AccB7I CCANNNNNTGG 1 cut(s) 51
AccBSI CCGCTC 1 cut(s) 100
AccI GTMKAC 1 cut(s) 796
AccII CGCG 1 cut(s) 693
AciI CCGC 7 cut(s) 86, 100, 123, 135, 473, 572, 770
AclWI GGATC 1 cut(s) 162
AcoI YGGCCR 2 cut(s) 149, 892
AcsI RAATTY 1 cut(s) 267
AcuI CTGAAG 1 cut(s) 56
AfiI CCNNNNNNNGG 4 cut(s) 51, 168, 331, 928
AgeI ACCGGT 1 cut(s) 62
AgsI TTSAA 3 cut(s) 22, 31, 763
AhdI GACNNNNNGTC 1 cut(s) 803
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 4 cut(s) 114, 206, 305, 524
AluI AGCT 4 cut(s) 114, 206, 305, 524
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 162
AoxI GGCC 2 cut(s) 149, 892
ApeKI GCWGC 3 cut(s) 524, 591, 772
ApoI RAATTY 1 cut(s) 267
AsiGI ACCGGT 1 cut(s) 62
AspLEI GCGC 1 cut(s) 693
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 528, 601
AvaII GGWCC 1 cut(s) 346
BalI TGGCCA 1 cut(s) 894
BbvI GCAGC 3 cut(s) 511, 578, 759
BccI CCATC 5 cut(s) 53, 251, 377, 463, 541
BceAI ACGGC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 1 cut(s) 747
BfuAI ACCTGC 1 cut(s) 565
BglII AGATCT 1 cut(s) 811
BisI GCNGC 5 cut(s) 124, 474, 525, 592, 773
BlsI GCNGC 5 cut(s) 125, 475, 526, 593, 774
Bme18I GGWCC 1 cut(s) 346
BmeRI GACNNNNNGTC 1 cut(s) 803
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 2 cut(s) 348, 372
BmsI GCATC 2 cut(s) 80, 571
BpmI CTGGAG 1 cut(s) 523
Bpu10I CCTNAGC 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 360
BsaI GGTCTC 1 cut(s) 136
BsaJI CCNNGG 3 cut(s) 222, 615, 853
BsaWI WCCGGW 1 cut(s) 62
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 168, 331, 928
Bse118I RCCGGY 4 cut(s) 62, 161, 186, 921
Bse1I ACTGG 4 cut(s) 12, 491, 595, 863
BseCI ATCGAT 1 cut(s) 360
BseDI CCNNGG 3 cut(s) 222, 615, 853
BseGI GGATG 2 cut(s) 95, 586
BseLI CCNNNNNNNGG 4 cut(s) 51, 168, 331, 928
BseNI ACTGG 4 cut(s) 12, 491, 595, 863
BseRI GAGGAG 1 cut(s) 689
BseXI GCAGC 3 cut(s) 511, 578, 759
BsgI GTGCAG 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 693
BshFI GGCC 2 cut(s) 151, 894
BshTI ACCGGT 1 cut(s) 62
BshVI ATCGAT 1 cut(s) 360
BsiSI CCGG 6 cut(s) 63, 152, 162, 187, 325, 922
BslI CCNNNNNNNGG 4 cut(s) 51, 168, 331, 928
BsmAI GTCTC 1 cut(s) 136
BsmI GAATGC 3 cut(s) 26, 693, 904
BsnI GGCC 2 cut(s) 151, 894
Bso31I GGTCTC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 154, 811
BspACI CCGC 7 cut(s) 86, 100, 123, 135, 473, 572, 770
BspANI GGCC 2 cut(s) 151, 894
BspDI ATCGAT 1 cut(s) 360
BspFNI CGCG 1 cut(s) 693
BspLI GGNNCC 2 cut(s) 348, 372
BspMI ACCTGC 1 cut(s) 565
BspPI GGATC 1 cut(s) 162
BspQI GCTCTTC 1 cut(s) 104
BspTNI GGTCTC 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 100
BsrFI RCCGGY 4 cut(s) 62, 161, 186, 921
BsrI ACTGG 4 cut(s) 12, 491, 595, 863
BssAI RCCGGY 4 cut(s) 62, 161, 186, 921
BssECI CCNNGG 3 cut(s) 222, 615, 853
BssMI GATC 2 cut(s) 154, 811
BssT1I CCWWGG 2 cut(s) 615, 853
Bst4CI ACNGT 2 cut(s) 277, 458
Bst6I CTCTTC 1 cut(s) 104
BstC8I GCNNGC 3 cut(s) 116, 163, 923
BstDEI CTNAG 2 cut(s) 82, 808
BstF5I GGATG 2 cut(s) 95, 586
BstFNI CGCG 1 cut(s) 693
BstHHI GCGC 1 cut(s) 693
BstKTI GATC 2 cut(s) 157, 814
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 2 cut(s) 154, 811
BstMWI GCNNNNNNNGC 4 cut(s) 23, 120, 203, 302
BstUI CGCG 1 cut(s) 693
BstV1I GCAGC 3 cut(s) 511, 578, 759
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
Bsu15I ATCGAT 1 cut(s) 360
BsuRI GGCC 2 cut(s) 151, 894
BsuTUI ATCGAT 1 cut(s) 360
BtsCI GGATG 2 cut(s) 95, 586
BtsI GCAGTG 2 cut(s) 748, 899
BtsIMutI CAGTG 5 cut(s) 19, 602, 748, 870, 899
BveI ACCTGC 1 cut(s) 565
Cac8I GCNNGC 3 cut(s) 116, 163, 923
CfoI GCGC 1 cut(s) 693
Cfr10I RCCGGY 4 cut(s) 62, 161, 186, 921
Cfr13I GGNCC 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 360
CspAI ACCGGT 1 cut(s) 62
CviAII CATG 3 cut(s) 449, 497, 896
DdeI CTNAG 2 cut(s) 82, 808
DpnI GATC 2 cut(s) 156, 813
DpnII GATC 2 cut(s) 154, 811
DriI GACNNNNNGTC 1 cut(s) 803
EaeI YGGCCR 2 cut(s) 149, 892
Eam1104I CTCTTC 1 cut(s) 104
Eam1105I GACNNNNNGTC 1 cut(s) 803
EarI CTCTTC 1 cut(s) 104
EciI GGCGGA 1 cut(s) 124
Eco130I CCWWGG 2 cut(s) 615, 853
Eco31I GGTCTC 1 cut(s) 136
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 56
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 615, 853
EcoT22I ATGCAT 1 cut(s) 95
ErhI CCWWGG 2 cut(s) 615, 853
FaeI CATG 3 cut(s) 452, 500, 899
FatI CATG 3 cut(s) 448, 496, 895
FauI CCCGC 1 cut(s) 79
FauNDI CATATG 1 cut(s) 480
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 5 cut(s) 124, 474, 525, 592, 773
FokI GGATG 2 cut(s) 102, 593
Fsp4HI GCNGC 5 cut(s) 124, 474, 525, 592, 773
FspBI CTAG 1 cut(s) 747
GlaI GCGC 1 cut(s) 692
GluI GCNGC 5 cut(s) 124, 474, 525, 592, 773
GsuI CTGGAG 1 cut(s) 523
HaeIII GGCC 2 cut(s) 151, 894
HapII CCGG 6 cut(s) 63, 152, 162, 187, 325, 922
HhaI GCGC 1 cut(s) 693
Hin1II CATG 3 cut(s) 452, 500, 899
Hin6I GCGC 1 cut(s) 691
HinP1I GCGC 1 cut(s) 691
HincII GTYRAC 2 cut(s) 316, 797
HindII GTYRAC 2 cut(s) 316, 797
HinfI GANTC 3 cut(s) 199, 227, 702
HpaII CCGG 6 cut(s) 63, 152, 162, 187, 325, 922
HphI GGTGA 2 cut(s) 528, 601
Hpy166II GTNNAC 2 cut(s) 316, 797
Hpy188I TCNGA 3 cut(s) 273, 346, 910
Hpy188III TCNNGA 6 cut(s) 52, 337, 502, 654, 782, 930
Hpy8I GTNNAC 2 cut(s) 316, 797
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 2 cut(s) 277, 458
HpyCH4V TGCA 7 cut(s) 93, 118, 240, 666, 741, 899, 904
HpyF10VI GCNNNNNNNGC 4 cut(s) 23, 120, 203, 302
HpyF3I CTNAG 2 cut(s) 82, 808
Hsp92II CATG 3 cut(s) 452, 500, 899
HspAI GCGC 1 cut(s) 691
KroI GCCGGC 2 cut(s) 161, 921
KroNI GCCGGC 2 cut(s) 163, 923
Kzo9I GATC 2 cut(s) 154, 811
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 1 cut(s) 682
Lsp1109I GCAGC 3 cut(s) 511, 578, 759
LweI GCATC 2 cut(s) 80, 571
MaeI CTAG 1 cut(s) 747
MaeIII GTNAC 1 cut(s) 607
MalI GATC 2 cut(s) 156, 813
MbiI CCGCTC 1 cut(s) 100
MboI GATC 2 cut(s) 154, 811
MboII GAAGA 3 cut(s) 40, 121, 365
MfeI CAATTG 2 cut(s) 319, 732
MflI RGATCY 1 cut(s) 811
MlsI TGGCCA 1 cut(s) 894
MluCI AATT 5 cut(s) 143, 267, 319, 511, 732
MluNI TGGCCA 1 cut(s) 894
MlyI GAGTC 1 cut(s) 696
Mox20I TGGCCA 1 cut(s) 894
Mph1103I ATGCAT 1 cut(s) 95
MroNI GCCGGC 2 cut(s) 161, 921
MscI TGGCCA 1 cut(s) 894
Msp20I TGGCCA 1 cut(s) 894
MspA1I CMGCKG 2 cut(s) 123, 772
MspI CCGG 6 cut(s) 63, 152, 162, 187, 325, 922
MunI CAATTG 2 cut(s) 319, 732
Mva1269I GAATGC 3 cut(s) 26, 693, 904
MvnI CGCG 1 cut(s) 693
MwoI GCNNNNNNNGC 4 cut(s) 23, 120, 203, 302
NaeI GCCGGC 2 cut(s) 163, 923
NdeI CATATG 1 cut(s) 480
NdeII GATC 2 cut(s) 154, 811
NgoMIV GCCGGC 2 cut(s) 161, 921
NlaIII CATG 3 cut(s) 452, 500, 899
NlaIV GGNNCC 2 cut(s) 348, 372
NmeAIII GCCGAG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 607
NsiI ATGCAT 1 cut(s) 95
PaqCI CACCTGC 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 3 cut(s) 26, 693, 904
PdiI GCCGGC 2 cut(s) 163, 923
PfeI GAWTC 2 cut(s) 199, 227
PflMI CCANNNNNTGG 1 cut(s) 51
PinAI ACCGGT 1 cut(s) 62
PkrI GCNGC 5 cut(s) 125, 475, 526, 593, 774
PleI GAGTC 1 cut(s) 696
PpsI GAGTC 1 cut(s) 696
PspN4I GGNNCC 2 cut(s) 348, 372
PspPI GGNCC 1 cut(s) 346
PsuI RGATCY 1 cut(s) 811
SalI GTCGAC 1 cut(s) 795
SapI GCTCTTC 1 cut(s) 104
SatI GCNGC 5 cut(s) 124, 474, 525, 592, 773
Sau3AI GATC 2 cut(s) 154, 811
Sau96I GGNCC 1 cut(s) 346
SchI GAGTC 1 cut(s) 696
SfaNI GCATC 2 cut(s) 80, 571
SinI GGWCC 1 cut(s) 346
Sse9I AATT 5 cut(s) 143, 267, 319, 511, 732
SsiI CCGC 7 cut(s) 86, 100, 123, 135, 473, 572, 770
SspMI CTAG 1 cut(s) 747
StyI CCWWGG 2 cut(s) 615, 853
TaaI ACNGT 2 cut(s) 277, 458
TaqI TCGA 3 cut(s) 202, 360, 796
TasI AATT 5 cut(s) 143, 267, 319, 511, 732
TauI GCSGC 2 cut(s) 126, 476
TfiI GAWTC 2 cut(s) 199, 227
TscAI CASTG 5 cut(s) 19, 602, 748, 870, 906
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 3 cut(s) 524, 591, 772
Tsp45I GTSAC 1 cut(s) 607
TspDTI ATGAA 3 cut(s) 485, 497, 801
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 5 cut(s) 19, 602, 748, 870, 906
Van91I CCANNNNNTGG 1 cut(s) 51
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 1 cut(s) 267
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XmiI GTMKAC 1 cut(s) 796
XspI CTAG 1 cut(s) 747
Zsp2I ATGCAT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.