Rh7CG463500

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0008348
Physical Location & Seq
Reverse (-)
61924833 .. 61927981
3149 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG463500.1

Sequence Viewer

Length: 729 bp
ATGACAGTCTCCGCTGCATTCAAGTCTTCCAAACTCATCTCCTGGAAATCGACCGGTCGGCTTCAGCAGACCTTAGCGGGATGCATAGAGCGCGCGGGGAAGAGCTTGCACAGCGGCAAGGTCTCCACGGTGAAGTTGTGGCCGGAGCTCGCCGGAAAAGGGAGGTACTTTGACTTTCGGTCAACTCTGATTCGAGCTTCGATCGAGTTCGCTGAGGATTCGCCTCTCTGCACCACTCTCTGTAAAGATGGGCTGAAAATCCCAACTGTTGAGCACTTGCTTTCGGCTCTGGAAGCTATGGAGGTCGATAATTGCAGGATTGAGATTGAGAATTCGGATTCCCAAGATGATTGCAGTGTTGAGGTTCCTATCTTTGATGGATCAGCAAGAGAGTGGGTGGAGGCGATAGAACAAGTTGGGCTGCAAGTCGCAACAGATCATCATGGTGACTGTTGTGAAAAGATGATAGCATATGTGAATGAACCGGTGCATGTGTGGAGGAATGATTCTTTTGTTGCTGCATTCCCATCAGAAGAAATCCGTATCACTTATGGGATTGACTTTCGACAGGTGCCAGCCATTGCAAGCCAGTGGTTTTGTGTGACTTCATTGGATAAATCTTTATATTCCAAGCAGATAGCTTTGTCAAGAACCTTTTGCATTTATGAGGAGGTCAGTGCTATATACTCCTTCATCAGTAGTATATTAGCAACAGTATTGTTGTATTAA

Protein Analysis

242

Amino Acids

27.0

Weight (kDa)

5.1

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxC PF03331 22 - 228 6.5e-48 UDP-3-O-acyl N-acetylglycosamine deacetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 571
AccII CGCG 2 cut(s) 93, 95
AciI CCGC 4 cut(s) 12, 77, 95, 114
AclWI GGATC 1 cut(s) 388
AcoI YGGCCR 1 cut(s) 140
AcsI RAATTY 1 cut(s) 331
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 159
AgeI ACCGGT 2 cut(s) 53, 484
AgsI TTSAA 1 cut(s) 22
AhdI GACNNNNNGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 41
AluBI AGCT 5 cut(s) 105, 148, 197, 296, 641
AluI AGCT 5 cut(s) 105, 148, 197, 296, 641
Alw21I GWGCWC 2 cut(s) 150, 276
Alw26I GTCTC 2 cut(s) 13, 127
AlwI GGATC 1 cut(s) 388
AoxI GGCC 1 cut(s) 140
ApeKI GCWGC 3 cut(s) 14, 421, 518
ApoI RAATTY 1 cut(s) 331
AsiGI ACCGGT 2 cut(s) 53, 484
AspLEI GCGC 2 cut(s) 93, 95
AsuHPI GGTGA 2 cut(s) 142, 458
BanI GGYRCC 1 cut(s) 571
BanII GRGCYC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 150, 276
BbvCI CCTCAGC 1 cut(s) 213
BbvI GCAGC 2 cut(s) 408, 505
BccI CCATC 3 cut(s) 242, 371, 535
BciT130I CCWGG 1 cut(s) 43
BcoDI GTCTC 2 cut(s) 13, 127
BisI GCNGC 4 cut(s) 15, 115, 422, 519
BlsI GCNGC 4 cut(s) 16, 116, 423, 520
Bme1390I CCNGG 1 cut(s) 43
BmeRI GACNNNNNGTC 1 cut(s) 178
BmiI GGNNCC 2 cut(s) 366, 573
BmrFI CCNGG 1 cut(s) 43
BmsI GCATC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 18
Bpu10I CCTNAGC 2 cut(s) 73, 213
BsaI GGTCTC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 126
BsaWI WCCGGW 2 cut(s) 53, 484
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse118I RCCGGY 2 cut(s) 53, 484
Bse1I ACTGG 1 cut(s) 589
Bse3DI GCAATG 1 cut(s) 579
BseBI CCWGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 589
BsePI GCGCGC 1 cut(s) 91
BseRI GAGGAG 1 cut(s) 683
BseXI GCAGC 2 cut(s) 408, 505
BsgI GTGCAG 1 cut(s) 214
Bsh1236I CGCG 2 cut(s) 93, 95
Bsh1285I CGRYCG 3 cut(s) 54, 58, 204
BshFI GGCC 1 cut(s) 142
BshNI GGYRCC 1 cut(s) 571
BshTI ACCGGT 2 cut(s) 53, 484
BsiEI CGRYCG 3 cut(s) 54, 58, 204
BsiHKAI GWGCWC 2 cut(s) 150, 276
BsiSI CCGG 4 cut(s) 54, 143, 153, 485
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 2 cut(s) 13, 127
BsmI GAATGC 2 cut(s) 17, 521
BsnI GGCC 1 cut(s) 142
Bso31I GGTCTC 1 cut(s) 127
Bsp1286I GDGCHC 2 cut(s) 150, 276
Bsp143I GATC 3 cut(s) 201, 380, 436
BspACI CCGC 4 cut(s) 12, 77, 95, 114
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 2 cut(s) 93, 95
BspLI GGNNCC 2 cut(s) 366, 573
BspPI GGATC 1 cut(s) 388
BspQI GCTCTTC 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 579
BsrFI RCCGGY 2 cut(s) 53, 484
BsrI ACTGG 1 cut(s) 589
BssAI RCCGGY 2 cut(s) 53, 484
BssECI CCNNGG 1 cut(s) 126
BssHII GCGCGC 1 cut(s) 91
BssMI GATC 3 cut(s) 201, 380, 436
Bst2UI CCWGG 1 cut(s) 43
Bst4CI ACNGT 5 cut(s) 7, 130, 268, 452, 715
Bst6I CTCTTC 1 cut(s) 95
BstC8I GCNNGC 5 cut(s) 93, 107, 150, 576, 586
BstDEI CTNAG 2 cut(s) 73, 213
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 93, 95
BstHHI GCGC 2 cut(s) 93, 95
BstKTI GATC 3 cut(s) 204, 383, 439
BstMAI GTCTC 2 cut(s) 13, 127
BstMBI GATC 3 cut(s) 201, 380, 436
BstMCI CGRYCG 3 cut(s) 54, 58, 204
BstMWI GCNNNNNNNGC 3 cut(s) 90, 111, 293
BstNI CCWGG 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 41
BstUI CGCG 2 cut(s) 93, 95
BstV1I GCAGC 2 cut(s) 408, 505
BstV2I GAAGAC 1 cut(s) 18
BsuRI GGCC 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 86
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 3 cut(s) 361, 596, 682
Cac8I GCNNGC 5 cut(s) 93, 107, 150, 576, 586
CfoI GCGC 2 cut(s) 93, 95
Cfr10I RCCGGY 2 cut(s) 53, 484
Csp6I GTAC 1 cut(s) 166
CspAI ACCGGT 2 cut(s) 53, 484
CviAII CATG 2 cut(s) 443, 491
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 2 cut(s) 73, 213
DpnI GATC 3 cut(s) 203, 382, 438
DpnII GATC 3 cut(s) 201, 380, 436
DriI GACNNNNNGTC 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 140
Eam1104I CTCTTC 1 cut(s) 95
Eam1105I GACNNNNNGTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 95
Ecl136II GAGCTC 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 47
EcoICRI GAGCTC 1 cut(s) 148
EcoRI GAATTC 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 41
EcoT22I ATGCAT 1 cut(s) 86
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 2 cut(s) 446, 494
FatI CATG 2 cut(s) 442, 490
FauI CCCGC 2 cut(s) 70, 88
FauNDI CATATG 1 cut(s) 472
Fnu4HI GCNGC 4 cut(s) 15, 115, 422, 519
FokI GGATG 1 cut(s) 93
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 4 cut(s) 15, 115, 422, 519
GlaI GCGC 2 cut(s) 92, 94
GluI GCNGC 4 cut(s) 15, 115, 422, 519
HaeIII GGCC 1 cut(s) 142
HapII CCGG 4 cut(s) 54, 143, 153, 485
HhaI GCGC 2 cut(s) 93, 95
Hin1II CATG 2 cut(s) 446, 494
Hin6I GCGC 2 cut(s) 91, 93
HinP1I GCGC 2 cut(s) 91, 93
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 4 cut(s) 190, 218, 338, 506
HpaII CCGG 4 cut(s) 54, 143, 153, 485
HphI GGTGA 2 cut(s) 142, 458
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 3 cut(s) 189, 337, 532
Hpy188III TCNNGA 2 cut(s) 290, 648
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 700
HpyCH4III ACNGT 5 cut(s) 7, 130, 268, 452, 715
HpyF10VI GCNNNNNNNGC 3 cut(s) 90, 111, 293
HpyF3I CTNAG 2 cut(s) 73, 213
Hsp92II CATG 2 cut(s) 446, 494
HspAI GCGC 2 cut(s) 91, 93
Kzo9I GATC 3 cut(s) 201, 380, 436
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 145
Lsp1109I GCAGC 2 cut(s) 408, 505
LweI GCATC 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 446, 601
MalI GATC 3 cut(s) 203, 382, 438
MboI GATC 3 cut(s) 201, 380, 436
MboII GAAGA 3 cut(s) 18, 112, 545
MhlI GDGCHC 2 cut(s) 150, 276
MluCI AATT 2 cut(s) 310, 331
MnlI CCTC 9 cut(s) 156, 208, 234, 295, 355, 394, 492, 661, 664
Mph1103I ATGCAT 1 cut(s) 86
MseI TTAA 1 cut(s) 727
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 14, 114
MspI CCGG 4 cut(s) 54, 143, 153, 485
MspR9I CCNGG 1 cut(s) 43
Mva1269I GAATGC 2 cut(s) 17, 521
MvaI CCWGG 1 cut(s) 43
MvnI CGCG 2 cut(s) 93, 95
MwoI GCNNNNNNNGC 3 cut(s) 90, 111, 293
NdeI CATATG 1 cut(s) 472
NdeII GATC 3 cut(s) 201, 380, 436
NlaIII CATG 2 cut(s) 446, 494
NlaIV GGNNCC 2 cut(s) 366, 573
NmuCI GTSAC 2 cut(s) 446, 601
NsiI ATGCAT 1 cut(s) 86
NspI RCATGY 1 cut(s) 494
PauI GCGCGC 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 95
PctI GAATGC 2 cut(s) 17, 521
PfeI GAWTC 4 cut(s) 190, 218, 338, 506
PfoI TCCNGGA 1 cut(s) 41
PinAI ACCGGT 2 cut(s) 53, 484
PkrI GCNGC 4 cut(s) 16, 116, 423, 520
Ple19I CGATCG 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 41
PspGI CCWGG 1 cut(s) 41
PspN4I GGNNCC 2 cut(s) 366, 573
PteI GCGCGC 1 cut(s) 91
PvuI CGATCG 1 cut(s) 204
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 727
SatI GCNGC 4 cut(s) 15, 115, 422, 519
Sau3AI GATC 3 cut(s) 201, 380, 436
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 2 cut(s) 150, 276
SfaNI GCATC 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 444
Sse9I AATT 2 cut(s) 310, 331
SsiI CCGC 4 cut(s) 12, 77, 95, 114
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 1 cut(s) 41
TaaI ACNGT 5 cut(s) 7, 130, 268, 452, 715
TaqI TCGA 6 cut(s) 50, 193, 200, 204, 306, 565
TaqII GACCGA 1 cut(s) 168
TasI AATT 2 cut(s) 310, 331
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 4 cut(s) 190, 218, 338, 506
Tru1I TTAA 1 cut(s) 727
Tru9I TTAA 1 cut(s) 727
TscAI CASTG 3 cut(s) 361, 596, 682
TseFI GTSAC 2 cut(s) 446, 601
TseI GCWGC 3 cut(s) 14, 421, 518
Tsp45I GTSAC 2 cut(s) 446, 601
TspDTI ATGAA 3 cut(s) 495, 597, 682
TspGWI ACGGA 1 cut(s) 530
TspRI CASTG 3 cut(s) 361, 596, 682
XapI RAATTY 1 cut(s) 331
XceI RCATGY 1 cut(s) 494
Zsp2I ATGCAT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.