Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028222.1

Orthogroup ID

OG0008348

Physical Location & Seq

Genomic Coordinates Reverse (-)

39 .. 492

Gene Structure 454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028222.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgacagtctccgctgcattcaagtcttccaaactcatctcctggaaatcgaccggtcggcttcagcagaccttagcgggatgcatagagcgctcggggaagagcttgcacagcggcaaggtctccacggtgaagttgtggccggagctcgccggaaaagggaggtactttgactttcggtcaactctgattcgagcttcgatcgagttcgctgaggattcgcctctctgcaccactctctgtaaagatgggctgaaaatcccaactgttgagcacttgctttcggctttggaagctatggaggtcgataattgcaggattgagattgagaattcggattcccaagatgattgcagtgttgaggttggtacagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008759 GO:0009987 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901135 GO:2001289

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

LpxC

Protein Analysis

125

Amino Acids

13.67

Weight (kDa)

5.68

Isoelectric Point (pI)

43.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008348)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24793 AT1G24793 AT1G25054 AT1G25145 AT1G25210 AT1G25210
fragaria_vesca	FvH4_4g33550
malus_domestica	MD13G1020300.v1.1
prunus_persica	Prupe.1G333400_v2.0.a1
pyrus_communis	pycom13g01710
rosa_chinensis	RchiOBHm_Chr7g0235121
rosa_laevigata	RLG00000001181
rosa_multiflora	Rmu_sc0002239.1_g000018 Rmu_sc0028222.1_g000001
rosa_roxburghii	Rroxscaffold_3G00226270
rosa_rugosa	Rorug07G0287700 Rorug07G0287700 Rorug07G0287800
rosa_samantha	Rh7AG442700 Rh7BG415300 Rh7CG463500 Rh7DG432400
rosa_wichuraiana	Rw7G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	12, 77, 114
AcoI	YGGCCR	1 cut(s)	140
AcsI	RAATTY	1 cut(s)	331
AcuI	CTGAAG	1 cut(s)	47
AfaI	GTAC	2 cut(s)	167, 370
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgeI	ACCGGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	22
AhdI	GACNNNNNGTC	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	41
AluBI	AGCT	4 cut(s)	105, 148, 197, 296
AluI	AGCT	4 cut(s)	105, 148, 197, 296
Alw21I	GWGCWC	2 cut(s)	150, 276
Alw26I	GTCTC	2 cut(s)	13, 127
Ama87I	CYCGRG	1 cut(s)	94
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	14
ApoI	RAATTY	1 cut(s)	331
AsiGI	ACCGGT	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	93
AsuHPI	GGTGA	1 cut(s)	142
AvaI	CYCGRG	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	150, 276
BbvCI	CCTCAGC	1 cut(s)	213
BccI	CCATC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	13, 127
BfoI	RGCGCY	1 cut(s)	94
BisI	GCNGC	2 cut(s)	15, 115
BlsI	GCNGC	2 cut(s)	16, 116
Bme1390I	CCNGG	1 cut(s)	43
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmeT110I	CYCGRG	1 cut(s)	94
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	18
Bpu10I	CCTNAGC	2 cut(s)	73, 213
BsaI	GGTCTC	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse118I	RCCGGY	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	86
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	214
Bsh1285I	CGRYCG	3 cut(s)	54, 58, 204
BshFI	GGCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	53
BsiEI	CGRYCG	3 cut(s)	54, 58, 204
BsiHKAI	GWGCWC	2 cut(s)	150, 276
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	3 cut(s)	54, 143, 153
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	2 cut(s)	13, 127
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	142
Bso31I	GGTCTC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	150, 276
Bsp143I	GATC	1 cut(s)	201
BspACI	CCGC	3 cut(s)	12, 77, 114
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	205
BspQI	GCTCTTC	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	53
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	4 cut(s)	7, 130, 268, 373
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	107, 150
BstDEI	CTNAG	2 cut(s)	73, 213
BstDSI	CCRYGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	1 cut(s)	93
BstKTI	GATC	1 cut(s)	204
BstMAI	GTCTC	2 cut(s)	13, 127
BstMBI	GATC	1 cut(s)	201
BstMCI	CGRYCG	3 cut(s)	54, 58, 204
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 111, 293
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	18
BsuRI	GGCC	1 cut(s)	142
BtgI	CCRYGG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	86
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	2 cut(s)	107, 150
CfoI	GCGC	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	166, 369
CspAI	ACCGGT	1 cut(s)	53
CviJI	RGCY	8 cut(s)	61, 105, 142, 148, 197, 253, 287, 296
CviKI_1	RGCY	8 cut(s)	61, 105, 142, 148, 197, 253, 287, 296
CviQI	GTAC	2 cut(s)	166, 369
DdeI	CTNAG	2 cut(s)	73, 213
DpnI	GATC	1 cut(s)	203
DpnII	GATC	1 cut(s)	201
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	140
Eam1104I	CTCTTC	1 cut(s)	95
Eam1105I	GACNNNNNGTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	127
Eco47III	AGCGCT	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	41
EcoT22I	ATGCAT	1 cut(s)	86
EcoT38I	GRGCYC	1 cut(s)	150
FaiI	YATR	2 cut(s)	86, 299
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	15, 115
FokI	GGATG	1 cut(s)	93
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	2 cut(s)	15, 115
GlaI	GCGC	1 cut(s)	92
GluI	GCNGC	2 cut(s)	15, 115
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	3 cut(s)	54, 143, 153
HhaI	GCGC	1 cut(s)	93
Hin6I	GCGC	1 cut(s)	91
HinP1I	GCGC	1 cut(s)	91
HincII	GTYRAC	1 cut(s)	183
HindII	GTYRAC	1 cut(s)	183
HinfI	GANTC	3 cut(s)	190, 218, 338
HpaII	CCGG	3 cut(s)	54, 143, 153
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	2 cut(s)	189, 337
Hpy8I	GTNNAC	1 cut(s)	183
HpyCH4III	ACNGT	4 cut(s)	7, 130, 268, 373
HpyCH4V	TGCA	6 cut(s)	17, 84, 109, 231, 315, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 111, 293
HpyF3I	CTNAG	2 cut(s)	73, 213
HspAI	GCGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	201
LguI	GCTCTTC	1 cut(s)	95
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	6 cut(s)	28, 55, 67, 156, 166, 301
LweI	GCATC	1 cut(s)	71
MalI	GATC	1 cut(s)	203
MboI	GATC	1 cut(s)	201
MboII	GAAGA	2 cut(s)	18, 112
MhlI	GDGCHC	2 cut(s)	150, 276
MluCI	AATT	2 cut(s)	310, 331
MnlI	CCTC	5 cut(s)	156, 208, 234, 295, 355
Mph1103I	ATGCAT	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	14, 114
MspI	CCGG	3 cut(s)	54, 143, 153
MspR9I	CCNGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	90, 111, 293
NdeII	GATC	1 cut(s)	201
NsiI	ATGCAT	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	190, 218, 338
PfoI	TCCNGGA	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	16, 116
Ple19I	CGATCG	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PvuI	CGATCG	1 cut(s)	204
RsaI	GTAC	2 cut(s)	167, 370
RsaNI	GTAC	2 cut(s)	166, 369
SacI	GAGCTC	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	95
SatI	GCNGC	2 cut(s)	15, 115
Sau3AI	GATC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	150, 276
SetI	ASST	9 cut(s)	74, 107, 123, 150, 167, 199, 298, 306, 366
SfaNI	GCATC	1 cut(s)	71
Sse9I	AATT	2 cut(s)	310, 331
SsiI	CCGC	3 cut(s)	12, 77, 114
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	4 cut(s)	7, 130, 268, 373
TaqI	TCGA	5 cut(s)	50, 193, 200, 204, 306
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	310, 331
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	3 cut(s)	190, 218, 338
TscAI	CASTG	1 cut(s)	361
TseI	GCWGC	1 cut(s)	14
TspRI	CASTG	1 cut(s)	361
XapI	RAATTY	1 cut(s)	331
Zsp2I	ATGCAT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.