Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Reverse (-)

8880267 .. 8882100

Gene Structure 1834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGCACGGTTTGAGCCATATAACTATAATAATGGTCATGATCCTTTCTTTGCACACATTAACCAAAATCCAGAGCTAATAAATCTGGACTTACCAGCTTCTACCCCTTCCAGTTTCATGCTTTTCTCCAATGGAGCTTTAGTTGATGCCAATCACAATAATTCTCACTTCTTCCCAAATTTATTGCACGGTAATACGAGAAGAAAAGGAAATAAAGAAGAGAGTGGGTCGAAGAGAAGAAGAAAGAGGTCGGAAGAGGAAGAAGCCATGAATGGAGATGAGACTCAGAAGCCAAAAGATGTTGTTCATGTCCGAGCTAAGAGAGGTCAAGCTACTGATAGCCATAGTTTGGCTGAAAGGGTACGAAGAGAGAAGATCAATGAAAGGCTGAAATGCTTACAAGACCTTGTTCCAGGATGCTACAAGGCAATGGGAATGGCAGTGATGCTTGATGTCATCATAGATTATGTACGATCACTCCAGAATCAAATCGAGTTTTTGTCCATGAAACTCTCAGCGGCAAGTGCATGTTACGACCTTAATTCTTTGGATATTGAGCCAACGGATATATTTCAGGGAGGGAATATTCATAGTGCAGCAGAGATGGAAAGGATTTTAAGAGAAAGCGTTGGAACACAGCCTCCTAATTTCAGTTCAACATTACCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

223

Amino Acids

25.21

Weight (kDa)

6.45

Isoelectric Point (pI)

61.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	119 - 164	3.8e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	1 cut(s)	518
AclWI	GGATC	1 cut(s)	35
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	2 cut(s)	363, 471
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	1 cut(s)	657
AjnI	CCWGG	1 cut(s)	412
AloI	GAACNNNNNNTCC	2 cut(s)	625, 657
AluBI	AGCT	5 cut(s)	76, 98, 137, 317, 332
AluI	AGCT	5 cut(s)	76, 98, 137, 317, 332
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	1 cut(s)	598
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	275
BisI	GCNGC	2 cut(s)	519, 597
BlsI	GCNGC	2 cut(s)	520, 598
Bme1390I	CCNGG	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	3 cut(s)	136, 407, 435
BpmI	CTGGAG	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	150
BsaXI	ACNNNNNCTCC	6 cut(s)	126, 156, 462, 492, 625, 655
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	435
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	414
BseGI	GGATG	1 cut(s)	422
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	435
BseMII	CTCAG	2 cut(s)	299, 528
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	1 cut(s)	608
BsgI	GTGCAG	1 cut(s)	615
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	275
Bsp143I	GATC	3 cut(s)	40, 375, 473
BspACI	CCGC	1 cut(s)	518
BspCNI	CTCAG	2 cut(s)	298, 527
BspHI	TCATGA	1 cut(s)	37
BspPI	GGATC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	435
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	40, 375, 473
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	9, 191
Bst6I	CTCTTC	4 cut(s)	213, 227, 249, 361
BstDEI	CTNAG	3 cut(s)	285, 318, 514
BstF5I	GGATG	1 cut(s)	422
BstKTI	GATC	3 cut(s)	43, 378, 476
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	40, 375, 473
BstMWI	GCNNNNNNNGC	1 cut(s)	524
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	412
BstV1I	GCAGC	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	422
BtsI	GCAGTG	1 cut(s)	447
BtsIMutI	CAGTG	1 cut(s)	447
CciI	TCATGA	1 cut(s)	37
Csp6I	GTAC	2 cut(s)	362, 470
CviAII	CATG	6 cut(s)	38, 118, 268, 308, 505, 528
CviQI	GTAC	2 cut(s)	362, 470
DdeI	CTNAG	3 cut(s)	285, 318, 514
DpnI	GATC	3 cut(s)	42, 377, 475
DpnII	GATC	3 cut(s)	40, 375, 473
Eam1104I	CTCTTC	4 cut(s)	213, 227, 249, 361
EarI	CTCTTC	4 cut(s)	213, 227, 249, 361
EcoRII	CCWGG	1 cut(s)	412
FaeI	CATG	6 cut(s)	41, 121, 271, 311, 508, 531
FatI	CATG	6 cut(s)	37, 117, 267, 307, 504, 527
Fnu4HI	GCNGC	2 cut(s)	519, 597
FokI	GGATG	1 cut(s)	429
Fsp4HI	GCNGC	2 cut(s)	519, 597
GluI	GCNGC	2 cut(s)	519, 597
GsuI	CTGGAG	1 cut(s)	464
Hin1II	CATG	6 cut(s)	41, 121, 271, 311, 508, 531
HinfI	GANTC	2 cut(s)	283, 484
Hpy188I	TCNGA	3 cut(s)	253, 288, 314
Hpy188III	TCNNGA	4 cut(s)	38, 71, 86, 481
HpyAV	CCTTC	1 cut(s)	117
HpyCH4III	ACNGT	2 cut(s)	9, 191
HpyCH4V	TGCA	4 cut(s)	53, 187, 527, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	524
HpyF3I	CTNAG	3 cut(s)	285, 318, 514
Hsp92II	CATG	6 cut(s)	41, 121, 271, 311, 508, 531
Kzo9I	GATC	3 cut(s)	40, 375, 473
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	8 cut(s)	71, 84, 108, 124, 399, 426, 494, 560
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	3 cut(s)	136, 407, 435
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	3 cut(s)	42, 377, 475
MboI	GATC	3 cut(s)	40, 375, 473
MluCI	AATT	4 cut(s)	160, 178, 541, 646
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	2 cut(s)	231, 610
MnlI	CCTC	5 cut(s)	240, 250, 317, 572, 651
MseI	TTAA	3 cut(s)	60, 540, 617
MspA1I	CMGCKG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MwoI	GCNNNNNNNGC	1 cut(s)	524
NdeII	GATC	3 cut(s)	40, 375, 473
NlaIII	CATG	6 cut(s)	41, 121, 271, 311, 508, 531
NspI	RCATGY	1 cut(s)	531
PagI	TCATGA	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	484
PflMI	CCANNNNNTGG	1 cut(s)	349
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	2 cut(s)	520, 598
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Psp6I	CCWGG	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	412
RsaI	GTAC	2 cut(s)	363, 471
RsaNI	GTAC	2 cut(s)	362, 470
SaqAI	TTAA	3 cut(s)	60, 540, 617
SatI	GCNGC	2 cut(s)	519, 597
Sau3AI	GATC	3 cut(s)	40, 375, 473
SchI	GAGTC	1 cut(s)	277
ScrFI	CCNGG	1 cut(s)	414
SetI	ASST	9 cut(s)	78, 100, 139, 251, 319, 328, 334, 408, 540
SfaNI	GCATC	3 cut(s)	136, 407, 435
Sse9I	AATT	4 cut(s)	160, 178, 541, 646
SsiI	CCGC	1 cut(s)	518
SspI	AATATT	1 cut(s)	586
StyD4I	CCNGG	1 cut(s)	412
TaaI	ACNGT	2 cut(s)	9, 191
TaqI	TCGA	2 cut(s)	230, 492
TasI	AATT	4 cut(s)	160, 178, 541, 646
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	1 cut(s)	484
Tru1I	TTAA	3 cut(s)	60, 540, 617
Tru9I	TTAA	3 cut(s)	60, 540, 617
TscAI	CASTG	1 cut(s)	447
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	6 cut(s)	106, 284, 296, 396, 521, 578
TspGWI	ACGGA	1 cut(s)	578
TspRI	CASTG	1 cut(s)	447
Van91I	CCANNNNNTGG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.