Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Reverse (-)

30337242 .. 30339113

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G313200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAACTCATAGACAGTCTTTGTGAGTTGGAGAATCTAAGCGCCAATCATCATGAAATCATGGCTCTCTCCAATGGCATGAGTTTTAGCGATCATCAGCGACAAACTAACCATCTCCCTCTGAACTTCATTCATGATAATATAATTCAAAGCTTTTCCCATTCTGATGATCCAAATCACGATGTCTTAGTTGCTCATTCCACATCTCTGACTGGAGATTTTGCCCAAGAAAGCGAAAAGGGAAAGCCCTTAGGAGGAAGAAAGAGAAAGAGAAACAAGATTGACAAAGATGGGGAGAAACTAAAAGAAGTCATCCATGTGAGAGCTAAGAGAGGCCAAGCTACTGATAGCCACAGTTTGGCAGAAAGGGTAAGAAGAGAGAAGATAAATGAGAGGCTGAGATGCCTGCAAAATCTTGTCCCGGGATGCTACAAGACTATGGGAATGGCAGTAATGCTGGATGTGGTTATCAGTTACGTTCAGTCACTGCAGAATCAAATTGAGTTTCTCTCTATGAAGCTTTCTGCAGCAAGCGTGTATTACGATTTCAATGCACCAGGTGTGGATGCTCTGGACACAATGCAGCAACTGGGGACAAATAATGCATATGGGGAGGTACAAGAAGAGATGGTAAGATCAGGAGGGTATGGAGGAGGGCTTTCTAATTACAACAACAACAACTCAACATGGCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

233

Amino Acids

25.99

Weight (kDa)

6.05

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	358
AclWI	GGATC	1 cut(s)	164
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	2 cut(s)	254, 358
AgsI	TTSAA	2 cut(s)	149, 550
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	4 cut(s)	153, 326, 341, 520
AluI	AGCT	4 cut(s)	153, 326, 341, 520
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	2 cut(s)	487, 589
Ama87I	CYCGRG	1 cut(s)	421
AoxI	GGCC	2 cut(s)	334, 689
ApeKI	GCWGC	2 cut(s)	527, 583
AspLEI	GCGC	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	422, 423
AvaI	CYCGRG	1 cut(s)	421
AxyI	CCTNAGG	1 cut(s)	250
BbvI	GCAGC	2 cut(s)	539, 595
BccI	CCATC	3 cut(s)	120, 284, 622
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	1 cut(s)	558
BcnI	CCSGG	2 cut(s)	422, 423
BfmI	CTRYAG	2 cut(s)	488, 525
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	2 cut(s)	528, 584
BlsI	GCNGC	2 cut(s)	529, 585
Bme1390I	CCNGG	3 cut(s)	422, 423, 558
BmeT110I	CYCGRG	1 cut(s)	421
BmrFI	CCNGG	3 cut(s)	422, 423, 558
BmrI	ACTGGG	1 cut(s)	599
BmsI	GCATC	3 cut(s)	392, 416, 556
BmuI	ACTGGG	1 cut(s)	599
BplI	GAGNNNNNCTC	2 cut(s)	494, 526
BpmI	CTGGAG	1 cut(s)	234
BpuMI	CCSGG	2 cut(s)	422, 423
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 358
Bse1I	ACTGG	2 cut(s)	217, 594
Bse21I	CCTNAGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	4 cut(s)	312, 431, 466, 571
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	254, 358
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	2 cut(s)	217, 594
BseRI	GAGGAG	1 cut(s)	666
BseXI	GCAGC	2 cut(s)	539, 595
BshFI	GGCC	2 cut(s)	336, 691
BsiHKCI	CYCGRG	1 cut(s)	421
BsiSI	CCGG	1 cut(s)	422
BslFI	GGGAC	2 cut(s)	404, 607
BslI	CCNNNNNNNGG	2 cut(s)	254, 358
BsmFI	GGGAC	2 cut(s)	404, 607
BsnI	GGCC	2 cut(s)	336, 691
BsoBI	CYCGRG	1 cut(s)	421
Bsp143I	GATC	3 cut(s)	91, 169, 635
BspANI	GGCC	2 cut(s)	336, 691
BspCNI	CTCAG	1 cut(s)	390
BspHI	TCATGA	2 cut(s)	52, 133
BspMAI	CTGCAG	2 cut(s)	492, 529
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	217, 594
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	91, 169, 635
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	2 cut(s)	17, 356
Bst6I	CTCTTC	2 cut(s)	370, 618
BstC8I	GCNNGC	2 cut(s)	407, 532
BstDEI	CTNAG	5 cut(s)	38, 187, 250, 327, 398
BstF5I	GGATG	4 cut(s)	312, 431, 466, 571
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	3 cut(s)	94, 172, 638
BstMBI	GATC	3 cut(s)	91, 169, 635
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	3 cut(s)	420, 421, 556
BstSFI	CTRYAG	2 cut(s)	488, 525
BstV1I	GCAGC	2 cut(s)	539, 595
Bsu36I	CCTNAGG	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	336, 691
BtsCI	GGATG	4 cut(s)	312, 431, 466, 571
BtsI	GCAGTG	1 cut(s)	485
BtsIMutI	CAGTG	1 cut(s)	485
Cac8I	GCNNGC	2 cut(s)	407, 532
CaiI	CAGNNNCTG	2 cut(s)	487, 589
CciI	TCATGA	2 cut(s)	52, 133
CfoI	GCGC	1 cut(s)	44
Cfr9I	CCCGGG	1 cut(s)	421
CsiI	ACCWGGT	1 cut(s)	556
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	6 cut(s)	53, 61, 79, 134, 317, 687
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	5 cut(s)	38, 187, 250, 327, 398
DpnI	GATC	3 cut(s)	93, 171, 637
DpnII	GATC	3 cut(s)	91, 169, 635
DraIII	CACNNNGTG	1 cut(s)	560
Eam1104I	CTCTTC	2 cut(s)	370, 618
EarI	CTCTTC	2 cut(s)	370, 618
Eco81I	CCTNAGG	1 cut(s)	250
Eco88I	CYCGRG	1 cut(s)	421
EcoRII	CCWGG	1 cut(s)	556
EcoT22I	ATGCAT	1 cut(s)	607
FaeI	CATG	6 cut(s)	56, 64, 82, 137, 320, 690
FaqI	GGGAC	2 cut(s)	404, 607
FatI	CATG	6 cut(s)	52, 60, 78, 133, 316, 686
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	2 cut(s)	528, 584
FokI	GGATG	4 cut(s)	299, 438, 473, 578
Fsp4HI	GCNGC	2 cut(s)	528, 584
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	528, 584
GsuI	CTGGAG	1 cut(s)	234
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	336, 691
HapII	CCGG	1 cut(s)	422
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	6 cut(s)	56, 64, 82, 137, 320, 690
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HindIII	AAGCTT	2 cut(s)	151, 518
HinfI	GANTC	2 cut(s)	34, 493
HpaII	CCGG	1 cut(s)	422
Hpy188I	TCNGA	3 cut(s)	123, 166, 210
Hpy188III	TCNNGA	5 cut(s)	53, 134, 179, 572, 639
HpyCH4III	ACNGT	2 cut(s)	17, 356
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	6 cut(s)	409, 490, 527, 554, 583, 605
HpyF3I	CTNAG	5 cut(s)	38, 187, 250, 327, 398
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	6 cut(s)	56, 64, 82, 137, 320, 690
HspAI	GCGC	1 cut(s)	42
Kzo9I	GATC	3 cut(s)	91, 169, 635
LpnPI	CCDG	9 cut(s)	198, 419, 435, 443, 543, 557, 570, 575, 624
Lsp1109I	GCAGC	2 cut(s)	539, 595
LweI	GCATC	3 cut(s)	392, 416, 556
MabI	ACCWGGT	1 cut(s)	556
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	2 cut(s)	473, 483
MalI	GATC	3 cut(s)	93, 171, 637
MboI	GATC	3 cut(s)	91, 169, 635
MboII	GAAGA	4 cut(s)	270, 387, 394, 635
MluCI	AATT	3 cut(s)	144, 498, 664
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	8 cut(s)	129, 248, 326, 387, 607, 635, 644, 647
Mph1103I	ATGCAT	1 cut(s)	607
MslI	CAYNNNNRTG	2 cut(s)	165, 317
MspI	CCGG	1 cut(s)	422
MspR9I	CCNGG	3 cut(s)	422, 423, 558
MvaI	CCWGG	1 cut(s)	558
NciI	CCSGG	2 cut(s)	422, 423
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	3 cut(s)	91, 169, 635
NlaIII	CATG	6 cut(s)	56, 64, 82, 137, 320, 690
NmuCI	GTSAC	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	607
PagI	TCATGA	2 cut(s)	52, 133
PfeI	GAWTC	2 cut(s)	34, 493
PflMI	CCANNNNNTGG	1 cut(s)	358
PkrI	GCNGC	2 cut(s)	529, 585
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PstI	CTGCAG	2 cut(s)	492, 529
PstNI	CAGNNNCTG	2 cut(s)	487, 589
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
RseI	CAYNNNNRTG	2 cut(s)	165, 317
SatI	GCNGC	2 cut(s)	528, 584
Sau3AI	GATC	3 cut(s)	91, 169, 635
ScrFI	CCNGG	3 cut(s)	422, 423, 558
SetI	ASST	7 cut(s)	155, 328, 343, 480, 522, 562, 618
SexAI	ACCWGGT	1 cut(s)	556
SfaNI	GCATC	3 cut(s)	392, 416, 556
SfcI	CTRYAG	2 cut(s)	488, 525
SmaI	CCCGGG	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	165, 317
Sse9I	AATT	3 cut(s)	144, 498, 664
StyD4I	CCNGG	3 cut(s)	420, 421, 556
TaaI	ACNGT	2 cut(s)	17, 356
TaiI	ACGT	1 cut(s)	480
TasI	AATT	3 cut(s)	144, 498, 664
TfiI	GAWTC	2 cut(s)	34, 493
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	483
TseI	GCWGC	2 cut(s)	527, 583
Tsp45I	GTSAC	1 cut(s)	483
TspDTI	ATGAA	4 cut(s)	69, 118, 122, 530
TspMI	CCCGGG	1 cut(s)	421
TspRI	CASTG	1 cut(s)	492
Van91I	CCANNNNNTGG	1 cut(s)	358
XmaI	CCCGGG	1 cut(s)	421
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.