Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002328.1

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Reverse (-)

18107 .. 18642

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002328.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

atggaactgatagacagtctctgtgagttggagagtctcggcgccaatcatcatcatggaatcatggctctctccactgacagctttactcctcatcatcatcatgatcagcaacaacctcaagtccctgcagctatgaacttcagcactgatcatagtcatgatattcagagattttctcattctcatgatcgaaatgatgctcatcatcatcatgtcctaattgctcaatcaacagctgcagattttggcgaacaaagccaaatggaaaagccattgggaggaagaaagagaaagagaagcaatagtgataaagatatggacaaaccaaaagaggtcattcatgtgagagctaagcgaggccaagctactgatagccacagtttggcagaaagggtatttacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

135

Amino Acids

15.29

Weight (kDa)

6.47

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	281, 385
AluBI	AGCT	5 cut(s)	84, 134, 239, 353, 368
AluI	AGCT	5 cut(s)	84, 134, 239, 353, 368
Alw26I	GTCTC	2 cut(s)	23, 41
AlwNI	CAGNNNCTG	1 cut(s)	21
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	131, 239
AspLEI	GCGC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	143, 226
BclI	TGATCA	2 cut(s)	106, 151
BcoDI	GTCTC	2 cut(s)	23, 41
BfmI	CTRYAG	2 cut(s)	129, 240
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	2 cut(s)	132, 240
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	2 cut(s)	133, 241
BmiI	GGNNCC	1 cut(s)	43
BmsI	GCATC	1 cut(s)	190
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 385
Bse8I	GATNNNNATC	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	204
BseLI	CCNNNNNNNGG	2 cut(s)	281, 385
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	143, 226
BshFI	GGCC	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	281, 385
BsmAI	GTCTC	2 cut(s)	23, 41
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	363
Bsp143I	GATC	3 cut(s)	106, 151, 190
Bsp1720I	GCTNAGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	363
BspHI	TCATGA	3 cut(s)	103, 160, 187
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	2 cut(s)	133, 244
BspT107I	GGYRCC	1 cut(s)	41
BssMI	GATC	3 cut(s)	106, 151, 190
BssNI	GRCGYC	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	17, 383
BstACI	GRCGYC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	354
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	3 cut(s)	109, 154, 193
BstMAI	GTCTC	2 cut(s)	23, 41
BstMBI	GATC	3 cut(s)	106, 151, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	258
BstSFI	CTRYAG	2 cut(s)	129, 240
BstV1I	GCAGC	2 cut(s)	143, 226
BsuRI	GGCC	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	75, 147
CaiI	CAGNNNCTG	1 cut(s)	21
CciI	TCATGA	3 cut(s)	103, 160, 187
CfoI	GCGC	1 cut(s)	44
CviAII	CATG	7 cut(s)	56, 64, 104, 161, 188, 215, 344
DdeI	CTNAG	1 cut(s)	354
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	3 cut(s)	108, 153, 192
DpnII	GATC	3 cut(s)	106, 151, 190
Eco57I	CTGAAG	1 cut(s)	127
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	7 cut(s)	59, 67, 107, 164, 191, 218, 347
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	7 cut(s)	55, 63, 103, 160, 187, 214, 343
FbaI	TGATCA	2 cut(s)	106, 151
Fnu4HI	GCNGC	2 cut(s)	132, 240
Fsp4HI	GCNGC	2 cut(s)	132, 240
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	132, 240
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	7 cut(s)	59, 67, 107, 164, 191, 218, 347
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	34, 60
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	3 cut(s)	104, 161, 188
HpyCH4III	ACNGT	2 cut(s)	17, 383
HpyCH4V	TGCA	2 cut(s)	131, 242
HpyF10VI	GCNNNNNNNGC	1 cut(s)	258
HpyF3I	CTNAG	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	7 cut(s)	59, 67, 107, 164, 191, 218, 347
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Ksp22I	TGATCA	2 cut(s)	106, 151
Kzo9I	GATC	3 cut(s)	106, 151, 190
LpnPI	CCDG	1 cut(s)	141
Lsp1109I	GCAGC	2 cut(s)	143, 226
LweI	GCATC	1 cut(s)	190
MalI	GATC	3 cut(s)	108, 153, 192
MboI	GATC	3 cut(s)	106, 151, 190
MboII	GAAGA	1 cut(s)	297
MluCI	AATT	1 cut(s)	222
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	5 cut(s)	102, 129, 275, 328, 353
MslI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
MspA1I	CMGCKG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	258
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	3 cut(s)	106, 151, 190
NlaIII	CATG	7 cut(s)	59, 67, 107, 164, 191, 218, 347
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	18
PagI	TCATGA	3 cut(s)	103, 160, 187
PfeI	GAWTC	1 cut(s)	60
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	2 cut(s)	133, 241
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	43
PstI	CTGCAG	2 cut(s)	133, 244
PstNI	CAGNNNCTG	1 cut(s)	21
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
SatI	GCNGC	2 cut(s)	132, 240
Sau3AI	GATC	3 cut(s)	106, 151, 190
SchI	GAGTC	1 cut(s)	43
SetI	ASST	7 cut(s)	86, 121, 136, 241, 339, 355, 370
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	2 cut(s)	129, 240
SfoI	GGCGCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	1 cut(s)	222
SspDI	GGCGCC	1 cut(s)	41
TaaI	ACNGT	2 cut(s)	17, 383
TaqI	TCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	222
TfiI	GAWTC	1 cut(s)	60
TscAI	CASTG	2 cut(s)	82, 154
TseI	GCWGC	2 cut(s)	131, 239
TspDTI	ATGAA	2 cut(s)	152, 332
TspRI	CASTG	2 cut(s)	82, 154
Van91I	CCANNNNNTGG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.