Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Forward (+)

2902801 .. 2905106

Gene Structure 2306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1040900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAACTGATAGACGATCTTTGCGATTTGGAGACTAGTCTTGGTGCCAATCATCATGAAATCATGACTCTCTCGGCCAATGACACCTCCTTTACTACCGATCATCATCATCAGCCCCAACCTGACCAGCTCCCTATCAACTTCACTCATCATATTCAAAGCTTTCCCCATAATTCTGATGATCCAAATCATGATGATTTCTTAGTTGCTCATTCCACAGCTCATCTGATGACTGGAGATTTTCGCCAAGAAACTGGAAAAGGAAAGTCGTTTGGAGGAAGAAAGAGAAAGATAAACAATAGTGACAAAGATGGGGAGAAACTAAAAGAAGTGATCCATGTGAGAGCTAAGAGAGGCCAAGCTACTGATAGCCACAGTTTGGCAGAAAGGGTAAGAAGAGAGAAAATAAATGAGAGGCTGAGATGCCTGCAAAATCTGGTTCCAGGGTGCTACAAGACAATGGGAATGGCAGTAATGCTGGATGTGGTTATCAGCTACGTTCAGTCACTGCAGAAACAAATTGAGTTTCTGTCAATGAAACTTTCTGCAGCAAGTGCGTATTATGATTTCAATTCACCAGGTGTGGATGCTGCGGACGCAATGCAACAGCAGCAGGGGACAAATACTGCATATCACGAGGTACAAGAGATGGCAGTAAGATCAGAGATTCAGAAGGGTATGGAGGACTTCCTCACCTCAACAACGCAGCATGGCCTATTTGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

243

Amino Acids

27.31

Weight (kDa)

5.8

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	2 cut(s)	176, 328
AcoI	YGGCCR	1 cut(s)	75
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	1 cut(s)	642
AfiI	CCNNNNNNNGG	1 cut(s)	379
AgsI	TTSAA	2 cut(s)	158, 571
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	442, 577
AluBI	AGCT	6 cut(s)	130, 162, 221, 347, 362, 495
AluI	AGCT	6 cut(s)	130, 162, 221, 347, 362, 495
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	2 cut(s)	176, 328
AlwNI	CAGNNNCTG	1 cut(s)	508
AoxI	GGCC	3 cut(s)	75, 355, 712
ApeKI	GCWGC	4 cut(s)	548, 590, 610, 706
AsuHPI	GGTGA	2 cut(s)	567, 685
BanI	GGYRCC	1 cut(s)	44
BauI	CACGAG	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	560, 577, 622, 718
BccI	CCATC	2 cut(s)	305, 643
BciT130I	CCWGG	2 cut(s)	444, 579
BcoDI	GTCTC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	2 cut(s)	509, 546
BisI	GCNGC	4 cut(s)	549, 591, 611, 707
BlsI	GCNGC	4 cut(s)	550, 592, 612, 708
Bme1390I	CCNGG	2 cut(s)	444, 579
BmiI	GGNNCC	2 cut(s)	46, 441
BmrFI	CCNGG	2 cut(s)	444, 579
BmsI	GCATC	2 cut(s)	413, 577
BpmI	CTGGAG	1 cut(s)	255
BsaBI	GATNNNNATC	2 cut(s)	105, 186
BsaJI	CCNNGG	1 cut(s)	443
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	2 cut(s)	238, 259
Bse3DI	GCAATG	1 cut(s)	606
Bse8I	GATNNNNATC	2 cut(s)	105, 186
BseBI	CCWGG	2 cut(s)	444, 579
BseDI	CCNNGG	1 cut(s)	443
BseGI	GGATG	2 cut(s)	487, 592
BseJI	GATNNNNATC	2 cut(s)	105, 186
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	410
BseNI	ACTGG	2 cut(s)	238, 259
BseXI	GCAGC	4 cut(s)	560, 577, 622, 718
BshFI	GGCC	3 cut(s)	77, 357, 714
BshNI	GGYRCC	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	631
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	631
BsnI	GGCC	3 cut(s)	77, 357, 714
Bsp143I	GATC	5 cut(s)	16, 100, 181, 333, 659
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	3 cut(s)	77, 357, 714
BspCNI	CTCAG	1 cut(s)	411
BspHI	TCATGA	3 cut(s)	55, 63, 190
BspLI	GGNNCC	2 cut(s)	46, 441
BspMAI	CTGCAG	2 cut(s)	513, 550
BspPI	GGATC	2 cut(s)	176, 328
BspT107I	GGYRCC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	606
BsrI	ACTGG	2 cut(s)	238, 259
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	5 cut(s)	16, 100, 181, 333, 659
BssSI	CACGAG	1 cut(s)	635
Bst2BI	CACGAG	1 cut(s)	635
Bst2UI	CCWGG	2 cut(s)	444, 579
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	391
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	1 cut(s)	428
BstDEI	CTNAG	3 cut(s)	202, 348, 419
BstF5I	GGATG	2 cut(s)	487, 592
BstKTI	GATC	5 cut(s)	19, 103, 184, 336, 662
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	5 cut(s)	16, 100, 181, 333, 659
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 596, 610
BstNI	CCWGG	2 cut(s)	444, 579
BstSCI	CCNGG	2 cut(s)	442, 577
BstSFI	CTRYAG	2 cut(s)	509, 546
BstV1I	GCAGC	4 cut(s)	560, 577, 622, 718
BstXI	CCANNNNNNTGG	1 cut(s)	254
BsuRI	GGCC	3 cut(s)	77, 357, 714
BtsCI	GGATG	2 cut(s)	487, 592
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	1 cut(s)	506
Cac8I	GCNNGC	1 cut(s)	428
CaiI	CAGNNNCTG	1 cut(s)	508
CciI	TCATGA	3 cut(s)	55, 63, 190
CseI	GACGC	1 cut(s)	605
CsiI	ACCWGGT	1 cut(s)	577
Csp6I	GTAC	1 cut(s)	641
CviAII	CATG	5 cut(s)	56, 64, 191, 338, 710
CviQI	GTAC	1 cut(s)	641
DdeI	CTNAG	3 cut(s)	202, 348, 419
DpnI	GATC	5 cut(s)	18, 102, 183, 335, 661
DpnII	GATC	5 cut(s)	16, 100, 181, 333, 659
DraIII	CACNNNGTG	1 cut(s)	581
EaeI	YGGCCR	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
EcoRII	CCWGG	2 cut(s)	442, 577
FaeI	CATG	5 cut(s)	59, 67, 194, 341, 713
FaqI	GGGAC	1 cut(s)	631
FatI	CATG	5 cut(s)	55, 63, 190, 337, 709
Fnu4HI	GCNGC	4 cut(s)	549, 591, 611, 707
FokI	GGATG	2 cut(s)	494, 599
Fsp4HI	GCNGC	4 cut(s)	549, 591, 611, 707
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	4 cut(s)	549, 591, 611, 707
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	3 cut(s)	77, 357, 714
HgaI	GACGC	1 cut(s)	605
Hin1II	CATG	5 cut(s)	59, 67, 194, 341, 713
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	2 cut(s)	67, 667
HphI	GGTGA	2 cut(s)	567, 685
Hpy188I	TCNGA	4 cut(s)	178, 228, 664, 672
Hpy188III	TCNNGA	4 cut(s)	56, 64, 191, 635
HpyAV	CCTTC	1 cut(s)	667
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	5 cut(s)	430, 511, 548, 604, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 596, 610
HpyF3I	CTNAG	3 cut(s)	202, 348, 419
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	5 cut(s)	59, 67, 194, 341, 713
Kzo9I	GATC	5 cut(s)	16, 100, 181, 333, 659
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	4 cut(s)	560, 577, 622, 718
LweI	GCATC	2 cut(s)	413, 577
MabI	ACCWGGT	1 cut(s)	577
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	2 cut(s)	302, 504
MalI	GATC	5 cut(s)	18, 102, 183, 335, 661
MboI	GATC	5 cut(s)	16, 100, 181, 333, 659
MboII	GAAGA	2 cut(s)	291, 408
MluCI	AATT	3 cut(s)	172, 519, 571
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	8 cut(s)	97, 269, 347, 408, 631, 676, 701, 706
MspR9I	CCNGG	2 cut(s)	444, 579
MvaI	CCWGG	2 cut(s)	444, 579
MwoI	GCNNNNNNNGC	3 cut(s)	554, 596, 610
NdeII	GATC	5 cut(s)	16, 100, 181, 333, 659
NlaIII	CATG	5 cut(s)	59, 67, 194, 341, 713
NlaIV	GGNNCC	2 cut(s)	46, 441
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	2 cut(s)	302, 504
PagI	TCATGA	3 cut(s)	55, 63, 190
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	667
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	4 cut(s)	550, 592, 612, 708
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp6I	CCWGG	2 cut(s)	442, 577
PspGI	CCWGG	2 cut(s)	442, 577
PspN4I	GGNNCC	2 cut(s)	46, 441
PstI	CTGCAG	2 cut(s)	513, 550
PstNI	CAGNNNCTG	1 cut(s)	508
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SatI	GCNGC	4 cut(s)	549, 591, 611, 707
Sau3AI	GATC	5 cut(s)	16, 100, 181, 333, 659
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	444, 579
SexAI	ACCWGGT	1 cut(s)	577
SfaNI	GCATC	2 cut(s)	413, 577
SfcI	CTRYAG	2 cut(s)	509, 546
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	3 cut(s)	172, 519, 571
SsiI	CCGC	1 cut(s)	593
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	442, 577
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	1 cut(s)	501
TasI	AATT	3 cut(s)	172, 519, 571
TfiI	GAWTC	1 cut(s)	667
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	2 cut(s)	302, 504
TseI	GCWGC	4 cut(s)	548, 590, 610, 706
Tsp45I	GTSAC	2 cut(s)	302, 504
TspDTI	ATGAA	2 cut(s)	72, 551
TspRI	CASTG	1 cut(s)	513
Van91I	CCANNNNNTGG	1 cut(s)	379
XspI	CTAG	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.