Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Forward (+)

64520888 .. 64522791

Gene Structure 1904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG335900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGAACTGATAGACAGTCTCTGTGAGTTGGAGAGTCTCGGCGCCAATCATCATCATGGAATCATGGCTCTCTCCGCTGACAGCTTTACTCCTCATCATCATCATGATCAGCAACAACCTCAAGTCCCTGCAGCTATGAACTTCAGCACTGATCACAGTCATGATATTCAGAGATTTTCTCATTCTCATGATCGAAATGATGATGATCATCATCATGTCCTAATTGCACAATCAACAGCTGCAGATTTTGGCGAACAAAGCCAAATGGAAAAGCCATTGGGAGGAAGAAAGAGAAAGAGAAGCAATAGTGATAAAGATATGGACAAACCAAAGGAGGTCATTCATGTGAGAGCTAAGCGAGGCCAAGCTACTGATAGCCACAGTTTGGCAGAAAGGGTAAGAAGAGAAAAAATAAATGAAAGGCTGAGATGCCTGCAAAATCTTGTTCCAGGGTGCTATAAGACAATGGGAATGGCAGTAATGCTGGATGTGGTTATCAGTTACGTTCAGTCACTGCAGAATCAAATTGAGTTTCTCTCTATGAAGCTTTCTGCAGCAAGCTTGTATTATGATTTCAATTCACCAGGTCATGCAGATCCTGTTGACACAACGCAGGGGACAAATGCATATGAGGTACAAGAGAATATGGTAAGATCAGAGCAAGGGTATGGAGGAGGAGGAGGACTTTCTTTTAGCCAATCAACATCGTGGCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

239

Amino Acids

26.79

Weight (kDa)

6.07

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	385
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	1 cut(s)	590
AcuI	CTGAAG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	2 cut(s)	281, 385
AgsI	TTSAA	1 cut(s)	577
AjnI	CCWGG	2 cut(s)	448, 583
AluBI	AGCT	7 cut(s)	84, 134, 239, 353, 368, 547, 561
AluI	AGCT	7 cut(s)	84, 134, 239, 353, 368, 547, 561
Alw26I	GTCTC	2 cut(s)	23, 41
AlwI	GGATC	1 cut(s)	590
AlwNI	CAGNNNCTG	3 cut(s)	21, 514, 599
AoxI	GGCC	2 cut(s)	361, 710
ApeKI	GCWGC	3 cut(s)	131, 239, 554
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	573
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	143, 226, 566
BciT130I	CCWGG	2 cut(s)	450, 585
BclI	TGATCA	3 cut(s)	106, 151, 205
BcoDI	GTCTC	2 cut(s)	23, 41
BfmI	CTRYAG	4 cut(s)	129, 240, 515, 552
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	3 cut(s)	132, 240, 555
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	3 cut(s)	133, 241, 556
Bme1390I	CCNGG	2 cut(s)	450, 585
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	450, 585
BmsI	GCATC	1 cut(s)	419
BplI	GAGNNNNNCTC	4 cut(s)	163, 195, 521, 553
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	105
BsaBI	GATNNNNATC	3 cut(s)	204, 207, 210
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 385
Bse8I	GATNNNNATC	3 cut(s)	204, 207, 210
BseBI	CCWGG	2 cut(s)	450, 585
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	3 cut(s)	204, 207, 210
BseLI	CCNNNNNNNGG	2 cut(s)	281, 385
BseMII	CTCAG	1 cut(s)	416
BseRI	GAGGAG	4 cut(s)	81, 687, 690, 693
BseXI	GCAGC	3 cut(s)	143, 226, 566
BshFI	GGCC	2 cut(s)	363, 712
BshNI	GGYRCC	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	110, 631
BslI	CCNNNNNNNGG	2 cut(s)	281, 385
BsmAI	GTCTC	2 cut(s)	23, 41
BsmFI	GGGAC	2 cut(s)	110, 631
BsnI	GGCC	2 cut(s)	363, 712
Bsp143I	GATC	6 cut(s)	106, 151, 190, 205, 595, 653
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	2 cut(s)	363, 712
BspCNI	CTCAG	1 cut(s)	417
BspHI	TCATGA	3 cut(s)	103, 160, 187
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	4 cut(s)	133, 244, 519, 556
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	6 cut(s)	106, 151, 190, 205, 595, 653
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	450, 585
Bst4CI	ACNGT	3 cut(s)	17, 158, 383
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	434, 559
BstDEI	CTNAG	2 cut(s)	354, 425
BstF5I	GGATG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	6 cut(s)	109, 154, 193, 208, 598, 656
BstMAI	GTCTC	2 cut(s)	23, 41
BstMBI	GATC	6 cut(s)	106, 151, 190, 205, 595, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 258
BstNI	CCWGG	2 cut(s)	450, 585
BstSCI	CCNGG	2 cut(s)	448, 583
BstSFI	CTRYAG	4 cut(s)	129, 240, 515, 552
BstV1I	GCAGC	3 cut(s)	143, 226, 566
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
BsuRI	GGCC	2 cut(s)	363, 712
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	2 cut(s)	147, 512
Cac8I	GCNNGC	2 cut(s)	434, 559
CaiI	CAGNNNCTG	3 cut(s)	21, 514, 599
CciI	TCATGA	3 cut(s)	103, 160, 187
CfoI	GCGC	1 cut(s)	44
CsiI	ACCWGGT	1 cut(s)	583
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	8 cut(s)	56, 64, 104, 161, 188, 215, 344, 590
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	2 cut(s)	354, 425
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	6 cut(s)	108, 153, 192, 207, 597, 655
DpnII	GATC	6 cut(s)	106, 151, 190, 205, 595, 653
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	448, 583
EcoT22I	ATGCAT	1 cut(s)	628
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	8 cut(s)	59, 67, 107, 164, 191, 218, 347, 593
FaqI	GGGAC	2 cut(s)	110, 631
FatI	CATG	8 cut(s)	55, 63, 103, 160, 187, 214, 343, 589
FauNDI	CATATG	1 cut(s)	628
FbaI	TGATCA	3 cut(s)	106, 151, 205
Fnu4HI	GCNGC	3 cut(s)	132, 240, 555
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	3 cut(s)	132, 240, 555
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	132, 240, 555
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	363, 712
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	8 cut(s)	59, 67, 107, 164, 191, 218, 347, 593
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	2 cut(s)	545, 559
HinfI	GANTC	3 cut(s)	34, 60, 520
HphI	GGTGA	1 cut(s)	573
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	2 cut(s)	171, 658
Hpy188III	TCNNGA	3 cut(s)	104, 161, 188
Hpy8I	GTNNAC	1 cut(s)	604
HpyCH4III	ACNGT	3 cut(s)	17, 158, 383
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	8 cut(s)	131, 227, 242, 436, 517, 554, 593, 626
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 258
HpyF3I	CTNAG	2 cut(s)	354, 425
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	8 cut(s)	59, 67, 107, 164, 191, 218, 347, 593
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Ksp22I	TGATCA	3 cut(s)	106, 151, 205
Kzo9I	GATC	6 cut(s)	106, 151, 190, 205, 595, 653
LpnPI	CCDG	9 cut(s)	141, 435, 446, 462, 470, 570, 597, 599, 612
Lsp1109I	GCAGC	3 cut(s)	143, 226, 566
LweI	GCATC	1 cut(s)	419
MabI	ACCWGGT	1 cut(s)	583
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	500, 510
MalI	GATC	6 cut(s)	108, 153, 192, 207, 597, 655
MboI	GATC	6 cut(s)	106, 151, 190, 205, 595, 653
MboII	GAAGA	2 cut(s)	297, 414
MflI	RGATCY	1 cut(s)	595
MluCI	AATT	3 cut(s)	222, 525, 577
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	9
Mph1103I	ATGCAT	1 cut(s)	628
MslI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
MspA1I	CMGCKG	2 cut(s)	77, 239
MspR9I	CCNGG	2 cut(s)	450, 585
MvaI	CCWGG	2 cut(s)	450, 585
MwoI	GCNNNNNNNGC	2 cut(s)	74, 258
NarI	GGCGCC	1 cut(s)	42
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	6 cut(s)	106, 151, 190, 205, 595, 653
NlaIII	CATG	8 cut(s)	59, 67, 107, 164, 191, 218, 347, 593
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	510
NsiI	ATGCAT	1 cut(s)	628
PagI	TCATGA	3 cut(s)	103, 160, 187
PfeI	GAWTC	2 cut(s)	60, 520
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	3 cut(s)	133, 241, 556
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	448, 583
PspGI	CCWGG	2 cut(s)	448, 583
PspN4I	GGNNCC	1 cut(s)	43
PstI	CTGCAG	4 cut(s)	133, 244, 519, 556
PstNI	CAGNNNCTG	3 cut(s)	21, 514, 599
PsuI	RGATCY	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
RseI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
SatI	GCNGC	3 cut(s)	132, 240, 555
Sau3AI	GATC	6 cut(s)	106, 151, 190, 205, 595, 653
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	450, 585
SexAI	ACCWGGT	1 cut(s)	583
SfaNI	GCATC	1 cut(s)	419
SfcI	CTRYAG	4 cut(s)	129, 240, 515, 552
SfoI	GGCGCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	222, 525, 577
SsiI	CCGC	1 cut(s)	75
SspDI	GGCGCC	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	448, 583
TaaI	ACNGT	3 cut(s)	17, 158, 383
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	193
TasI	AATT	3 cut(s)	222, 525, 577
TfiI	GAWTC	2 cut(s)	60, 520
TscAI	CASTG	2 cut(s)	154, 519
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	3 cut(s)	131, 239, 554
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	4 cut(s)	152, 332, 432, 557
TspRI	CASTG	2 cut(s)	154, 519
Van91I	CCANNNNNTGG	1 cut(s)	385
Zsp2I	ATGCAT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.