Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Reverse (-)

45322139 .. 45324705

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0280200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCATCTGAAAAGGCATTCTTGCTTTCTAGGATTGAACAATTGGAAGCAAGAGTTGATGTAAGGAGCCATGAGGTAAATCCTACTGAGAAGAAATGCAAGTTAGCATTGGGTTCAGCTGACCATATTGTTGCTCTTGCAACGGTTATGACAAGCGATGGTCCATTAGAAGTTTGTCATGGGACTCCATTGGGAGATGACAGATTACGTGTTTCTGTTTATGCTGCTTTGGAGGAAAAGGCTGTGATTCCATTTGTTGTAGAAGATGAGATTACGACAGTAAAGCAAGCTATGGGGAGCTGGGTAATGTGGCCGAAAAACCTGATCATATTTGATGAAAAGAAAAAAGCAAGTGGTAAAGCAAGTAGGAAGCAGAAAAGGAATCAGTTTACGGAAGATGTAGAAGAAGAGTTTGACTTGCAGTCACTCGAATTAAGCTTGCCAGCCGCATTGCAGAAGTTATGTCAGTGGGGAAAAGAAGGATTCAAAGATAGGAAAGCTGTTTGCTTTTATAAAGAAGAGCGGGTATTTGGTATTAATGCTAAGAGCTATCTACTTGACTTGGATGTTAAGAGGCTTGCAAACATGGCAGAAGTAACAGGAACCCTTATAGTGTTGTACATGAGGTACTTATATGATGTACTAAAAGAGTCTATGATGCTAGACATGGTTGGTTTCATTGACCCAGCATTGATTGGTGAGATAGGGTGTGGGAGTGCAACAACGAGGTCCCGAAGTATAAAAGATCGCCTGATAAGTGCTTCTCCAAATCAGATTTTCTTGTTGCCTTACAATGCATCTGCTCATTGGATATTAACTGTGATTGATCCGGACAATGAGACTGTCTATTACATGGATCCATTAAAAAGATGCCTTGGGGGTAACGGAGAATGGAAAGATATTGTTGACACTGCCATATCAATGTTTAGAGGGGACCGCAACAAGAAAGGACGGGGTTCTATTCAATGGAAGAACATGGCAGGTATTCCATCACAGCCAAACGACAAACAGTGCGGCTATTTTGTGATGAGATATATGAGGGACATCATATATGATACAAACTTGGGTTTTGCAGATAAGTGGGGTAGGAGAGCCAACCATGTTTATTGTCAAGTGGAAATTGATGAAGTGCGTAATGAGCTCGCAAGTTATGTGGTGAAGAACATCCTCAAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

392

Amino Acids

44.48

Weight (kDa)

6.96

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8039	PF26133	30 - 111	4.4e-11	Domain of unknown function (DUF8039)
Peptidase_C48	PF02902	259 - 358	2.9e-09	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
Acc36I	ACCTGC	1 cut(s)	971
AccBSI	CCGCTC	1 cut(s)	523
AccIII	TCCGGA	1 cut(s)	829
AciI	CCGC	4 cut(s)	447, 523, 937, 1014
AclWI	GGATC	3 cut(s)	821, 851, 864
AcoI	YGGCCR	1 cut(s)	311
AfaI	GTAC	3 cut(s)	620, 629, 642
AflIII	ACRYGT	1 cut(s)	208
AgsI	TTSAA	3 cut(s)	38, 487, 965
AhdI	GACNNNNNGTC	1 cut(s)	421
AluBI	AGCT	7 cut(s)	119, 290, 300, 438, 500, 549, 1141
AluI	AGCT	7 cut(s)	119, 290, 300, 438, 500, 549, 1141
Alw21I	GWGCWC	1 cut(s)	1143
Alw26I	GTCTC	1 cut(s)	833
AlwI	GGATC	3 cut(s)	821, 851, 864
Aor13HI	TCCGGA	1 cut(s)	829
AoxI	GGCC	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	224
AseI	ATTAAT	1 cut(s)	537
AspS9I	GGNCC	3 cut(s)	161, 729, 934
AsuHPI	GGTGA	2 cut(s)	710, 1168
AvaII	GGWCC	3 cut(s)	161, 729, 934
BamHI	GGATCC	1 cut(s)	856
BanII	GRGCYC	1 cut(s)	1143
Bbv12I	GWGCWC	1 cut(s)	1143
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	152, 997
BclI	TGATCA	1 cut(s)	324
BcoDI	GTCTC	1 cut(s)	833
BfaI	CTAG	2 cut(s)	30, 662
BfuAI	ACCTGC	1 cut(s)	971
BisI	GCNGC	3 cut(s)	225, 447, 1015
BlsI	GCNGC	3 cut(s)	226, 448, 1016
Bme18I	GGWCC	3 cut(s)	161, 729, 934
BmeRI	GACNNNNNGTC	1 cut(s)	421
BmgT120I	GGNCC	3 cut(s)	161, 729, 934
BmiI	GGNNCC	5 cut(s)	68, 604, 731, 858, 935
BmsI	GCATC	4 cut(s)	14, 648, 806, 860
BpuEI	CTTGAG	1 cut(s)	1154
BsaAI	YACGTR	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	874
BsaWI	WCCGGW	1 cut(s)	829
Bse3DI	GCAATG	1 cut(s)	449
BseAI	TCCGGA	1 cut(s)	829
BseDI	CCNNGG	1 cut(s)	874
BseGI	GGATG	2 cut(s)	571, 1164
BseMI	GCAATG	1 cut(s)	449
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	2 cut(s)	300, 685
BshFI	GGCC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	1143
BsiSI	CCGG	1 cut(s)	830
BslFI	GGGAC	4 cut(s)	196, 715, 947, 1055
BsmAI	GTCTC	1 cut(s)	833
BsmFI	GGGAC	4 cut(s)	196, 715, 947, 1055
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	1143
Bsp13I	TCCGGA	1 cut(s)	829
Bsp1407I	TGTACA	1 cut(s)	618
Bsp143I	GATC	4 cut(s)	324, 745, 826, 856
BspACI	CCGC	4 cut(s)	447, 523, 937, 1014
BspANI	GGCC	1 cut(s)	313
BspCNI	CTCAG	1 cut(s)	79
BspEI	TCCGGA	1 cut(s)	829
BspLI	GGNNCC	5 cut(s)	68, 604, 731, 858, 935
BspMI	ACCTGC	1 cut(s)	971
BspPI	GGATC	3 cut(s)	821, 851, 864
BspQI	GCTCTTC	1 cut(s)	513
BsrBI	CCGCTC	1 cut(s)	523
BsrDI	GCAATG	1 cut(s)	449
BsrGI	TGTACA	1 cut(s)	618
BssECI	CCNNGG	1 cut(s)	874
BssMI	GATC	4 cut(s)	324, 745, 826, 856
BssT1I	CCWWGG	1 cut(s)	874
Bst4CI	ACNGT	5 cut(s)	145, 280, 820, 844, 1011
Bst6I	CTCTTC	2 cut(s)	402, 513
BstAUI	TGTACA	1 cut(s)	618
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	5 cut(s)	288, 440, 444, 579, 1143
BstDEI	CTNAG	2 cut(s)	87, 543
BstF5I	GGATG	2 cut(s)	571, 1164
BstKTI	GATC	4 cut(s)	327, 748, 829, 859
BstMAI	GTCTC	1 cut(s)	833
BstMBI	GATC	4 cut(s)	324, 745, 826, 856
BstMWI	GCNNNNNNNGC	2 cut(s)	587, 1138
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	313
BtgZI	GCGATG	1 cut(s)	171
BtsCI	GGATG	2 cut(s)	571, 1164
BtsI	GCAGTG	1 cut(s)	909
BtsIMutI	CAGTG	3 cut(s)	473, 909, 1016
BveI	ACCTGC	1 cut(s)	971
Cac8I	GCNNGC	5 cut(s)	288, 440, 444, 579, 1143
Cfr13I	GGNCC	3 cut(s)	161, 729, 934
Csp6I	GTAC	3 cut(s)	619, 628, 641
CspCI	CAANNNNNGTGG	2 cut(s)	1134, 1169
CviAII	CATG	8 cut(s)	71, 179, 586, 622, 667, 853, 976, 1100
CviQI	GTAC	3 cut(s)	619, 628, 641
DdeI	CTNAG	2 cut(s)	87, 543
DpnI	GATC	4 cut(s)	326, 747, 828, 858
DpnII	GATC	4 cut(s)	324, 745, 826, 856
DriI	GACNNNNNGTC	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	2 cut(s)	402, 513
Eam1105I	GACNNNNNGTC	1 cut(s)	421
EarI	CTCTTC	2 cut(s)	402, 513
Ecl136II	GAGCTC	1 cut(s)	1141
Eco130I	CCWWGG	1 cut(s)	874
Eco24I	GRGCYC	1 cut(s)	1143
Eco47I	GGWCC	3 cut(s)	161, 729, 934
Eco53kI	GAGCTC	1 cut(s)	1141
EcoICRI	GAGCTC	1 cut(s)	1141
EcoO109I	RGGNCCY	1 cut(s)	729
EcoT14I	CCWWGG	1 cut(s)	874
EcoT22I	ATGCAT	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	1143
ErhI	CCWWGG	1 cut(s)	874
FaeI	CATG	8 cut(s)	74, 182, 589, 625, 670, 856, 979, 1103
FalI	AAGNNNNNCTT	1 cut(s)	37
FaqI	GGGAC	4 cut(s)	196, 715, 947, 1055
FatI	CATG	8 cut(s)	70, 178, 585, 621, 666, 852, 975, 1099
FauI	CCCGC	1 cut(s)	516
FbaI	TGATCA	1 cut(s)	324
Fnu4HI	GCNGC	3 cut(s)	225, 447, 1015
FokI	GGATG	2 cut(s)	578, 1151
FriOI	GRGCYC	1 cut(s)	1143
Fsp4HI	GCNGC	3 cut(s)	225, 447, 1015
FspBI	CTAG	2 cut(s)	30, 662
GluI	GCNGC	3 cut(s)	225, 447, 1015
GsaI	CCCAGC	2 cut(s)	304, 689
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	1 cut(s)	830
Hin1II	CATG	8 cut(s)	74, 182, 589, 625, 670, 856, 979, 1103
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	5 cut(s)	184, 247, 382, 483, 650
HpaII	CCGG	1 cut(s)	830
HphI	GGTGA	2 cut(s)	710, 1168
Hpy166II	GTNNAC	2 cut(s)	390, 907
Hpy188I	TCNGA	2 cut(s)	10, 774
Hpy188III	TCNNGA	2 cut(s)	732, 830
Hpy8I	GTNNAC	2 cut(s)	390, 907
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	5 cut(s)	145, 280, 820, 844, 1011
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	8 cut(s)	99, 140, 421, 454, 581, 719, 797, 1073
HpyF10VI	GCNNNNNNNGC	2 cut(s)	587, 1138
HpyF3I	CTNAG	2 cut(s)	87, 543
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	8 cut(s)	74, 182, 589, 625, 670, 856, 979, 1103
Kpn2I	TCCGGA	1 cut(s)	829
Ksp22I	TGATCA	1 cut(s)	324
Kzo9I	GATC	4 cut(s)	324, 745, 826, 856
LguI	GCTCTTC	1 cut(s)	513
LmnI	GCTCC	2 cut(s)	66, 297
LpnPI	CCDG	8 cut(s)	286, 335, 456, 585, 699, 764, 843, 966
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	4 cut(s)	14, 648, 806, 860
MaeI	CTAG	2 cut(s)	30, 662
MaeII	ACGT	1 cut(s)	208
MaeIII	GTNAC	3 cut(s)	423, 595, 881
MalI	GATC	4 cut(s)	326, 747, 828, 858
MbiI	CCGCTC	1 cut(s)	523
MboI	GATC	4 cut(s)	324, 745, 826, 856
MboII	GAAGA	8 cut(s)	103, 275, 407, 416, 419, 530, 982, 1171
MfeI	CAATTG	1 cut(s)	41
MflI	RGATCY	1 cut(s)	856
MhlI	GDGCHC	1 cut(s)	1143
MluCI	AATT	3 cut(s)	41, 431, 1119
MlyI	GAGTC	2 cut(s)	178, 659
MnlI	CCTC	8 cut(s)	67, 226, 567, 618, 720, 923, 1032, 1178
Mph1103I	ATGCAT	1 cut(s)	799
MroI	TCCGGA	1 cut(s)	829
MseI	TTAA	5 cut(s)	434, 537, 570, 815, 863
MslI	CAYNNNNRTG	1 cut(s)	920
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	830
MunI	CAATTG	1 cut(s)	41
Mva1269I	GAATGC	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	587, 1138
NdeII	GATC	4 cut(s)	324, 745, 826, 856
NlaIII	CATG	8 cut(s)	74, 182, 589, 625, 670, 856, 979, 1103
NlaIV	GGNNCC	5 cut(s)	68, 604, 731, 858, 935
NmuCI	GTSAC	1 cut(s)	423
NsiI	ATGCAT	1 cut(s)	799
PciSI	GCTCTTC	1 cut(s)	513
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	3 cut(s)	247, 382, 483
PkrI	GCNGC	3 cut(s)	226, 448, 1016
PleI	GAGTC	2 cut(s)	178, 658
PpsI	GAGTC	2 cut(s)	178, 658
Ppu21I	YACGTR	1 cut(s)	209
PpuMI	RGGWCCY	1 cut(s)	729
PshBI	ATTAAT	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	513
Psp124BI	GAGCTC	1 cut(s)	1143
Psp5II	RGGWCCY	1 cut(s)	729
PspFI	CCCAGC	2 cut(s)	300, 685
PspN4I	GGNNCC	5 cut(s)	68, 604, 731, 858, 935
PspPI	GGNCC	3 cut(s)	161, 729, 934
PspPPI	RGGWCCY	1 cut(s)	729
PsuI	RGATCY	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	620, 629, 642
RsaNI	GTAC	3 cut(s)	619, 628, 641
RseI	CAYNNNNRTG	1 cut(s)	920
SacI	GAGCTC	1 cut(s)	1143
SapI	GCTCTTC	1 cut(s)	513
SaqAI	TTAA	5 cut(s)	434, 537, 570, 815, 863
SatI	GCNGC	3 cut(s)	225, 447, 1015
Sau3AI	GATC	4 cut(s)	324, 745, 826, 856
Sau96I	GGNCC	3 cut(s)	161, 729, 934
SchI	GAGTC	2 cut(s)	178, 659
SduI	GDGCHC	1 cut(s)	1143
SfaNI	GCATC	4 cut(s)	14, 648, 806, 860
SinI	GGWCC	3 cut(s)	161, 729, 934
SmiMI	CAYNNNNRTG	1 cut(s)	920
SmlI	CTYRAG	1 cut(s)	1169
SmoI	CTYRAG	1 cut(s)	1169
Sse9I	AATT	3 cut(s)	41, 431, 1119
SsiI	CCGC	4 cut(s)	447, 523, 937, 1014
SspMI	CTAG	2 cut(s)	30, 662
SstI	GAGCTC	1 cut(s)	1143
StyI	CCWWGG	1 cut(s)	874
TaaI	ACNGT	5 cut(s)	145, 280, 820, 844, 1011
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	1 cut(s)	429
TasI	AATT	3 cut(s)	41, 431, 1119
TatI	WGTACW	2 cut(s)	618, 640
TauI	GCSGC	2 cut(s)	449, 1017
TfiI	GAWTC	3 cut(s)	247, 382, 483
Tru1I	TTAA	5 cut(s)	434, 537, 570, 815, 863
Tru9I	TTAA	5 cut(s)	434, 537, 570, 815, 863
TscAI	CASTG	3 cut(s)	473, 916, 1016
TseFI	GTSAC	1 cut(s)	423
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	423
TspDTI	ATGAA	3 cut(s)	351, 667, 1140
TspGWI	ACGGA	2 cut(s)	407, 900
TspRI	CASTG	3 cut(s)	473, 916, 1016
VpaK11BI	GGWCC	3 cut(s)	161, 729, 934
VspI	ATTAAT	1 cut(s)	537
XspI	CTAG	2 cut(s)	30, 662
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.