Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Forward (+)

28232309 .. 28234671

Gene Structure 2363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCTCATGTACTTAAATTTAGCAGGGGCATGCAAAACCTCAGCTCATACATATTTGTTTCTAGACATCCCACGCACATTACTACTCCTTCTCCAAGCGAGCAGCTCAATCAATTTGATTAACATGGAACTGATAGACAGTCTGTGTGAGTTGGAGAGTCTCGGCGCCAATCATCATCATGAAATCATGGCTCTCTCCACTCACAGCTTGACTCGTCATCATCATCATGATCAGCAACAACCTCAAGTCCCTGCAGCTATGAACTTCAGCACTGATCATGGTCCTGATATTCAGAGATTCTCTACTTCTCGTGATCAATACGATCATCATCATGTCCTAATTGATCAATCAACAGCTACAGAGTTTGGAGAACAAGGCGAAAGGGAAAAGCCATTGGGAGGAAGAAAGAGAAAGAGAACCAATACTGACAAAGATATGGGCAAACCAAAGGAGGTCATTCATGTGAGAGCTAAGCGAGGCCAAGCAACTGATAGCCACAGTTTGGCAGAAAGGGTAAGAAGAGAAAAAATAAATGATAGACTGAGATGCCTGCAAAATCTTGTTCCAGGGTGCTATAAGACAATGGGAATGGCGGTGATGCTTGATGTGGTTATCAGTTACGTTCAGTCACTGCAGAATCAAATTGAGTTTCTCTCTATGAAGCTATCTGCAGCAAGCGCGTACTATGATTTCAATTCACCAGGTCATGCAGATCCCGTTGACACAATGCAGGGGACAAATGCATATGAGGTACAAGAGAATATGGTAAGATCAGAGCAAGGATATGGAGGAGGACTTCCTTTCAGCCAATCAACACAATGGCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

277

Amino Acids

31.13

Weight (kDa)

6.45

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	164
AccB7I	CCANNNNNTGG	1 cut(s)	502
AccII	CGCG	1 cut(s)	680
AciI	CCGC	1 cut(s)	593
AclWI	GGATC	1 cut(s)	707
AcsI	RAATTY	1 cut(s)	16
AcuI	CTGAAG	1 cut(s)	250
AcyI	GRCGYC	1 cut(s)	165
AfaI	GTAC	3 cut(s)	11, 683, 753
AfiI	CCNNNNNNNGG	2 cut(s)	398, 502
AgsI	TTSAA	1 cut(s)	694
AjnI	CCWGG	2 cut(s)	565, 700
AluBI	AGCT	7 cut(s)	44, 105, 207, 257, 356, 470, 664
AluI	AGCT	7 cut(s)	44, 105, 207, 257, 356, 470, 664
Alw26I	GTCTC	1 cut(s)	164
AlwI	GGATC	1 cut(s)	707
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	2 cut(s)	478, 821
ApeKI	GCWGC	3 cut(s)	102, 254, 671
ApoI	RAATTY	1 cut(s)	16
AspLEI	GCGC	2 cut(s)	167, 680
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	2 cut(s)	607, 690
AvaII	GGWCC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	40
BbvI	GCAGC	3 cut(s)	114, 266, 683
BciT130I	CCWGG	2 cut(s)	567, 702
BclI	TGATCA	4 cut(s)	229, 274, 313, 343
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	62
BfmI	CTRYAG	4 cut(s)	252, 357, 632, 669
BfoI	RGCGCY	1 cut(s)	168
BisI	GCNGC	3 cut(s)	103, 255, 672
BlpI	GCTNAGC	1 cut(s)	471
BlsI	GCNGC	3 cut(s)	104, 256, 673
Bme1390I	CCNGG	2 cut(s)	567, 702
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	2 cut(s)	567, 702
BmsI	GCATC	2 cut(s)	536, 588
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
Bpu10I	CCTNAGC	1 cut(s)	40
Bpu1102I	GCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	228
BsaBI	GATNNNNATC	1 cut(s)	327
BsaHI	GRCGYC	1 cut(s)	165
BsaJI	CCNNGG	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	75, 105
Bsc4I	CCNNNNNNNGG	2 cut(s)	398, 502
Bse8I	GATNNNNATC	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	567, 702
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	1 cut(s)	66
BseJI	GATNNNNATC	1 cut(s)	327
BseLI	CCNNNNNNNGG	2 cut(s)	398, 502
BseMII	CTCAG	2 cut(s)	54, 533
BseRI	GAGGAG	1 cut(s)	804
BseXI	GCAGC	3 cut(s)	114, 266, 683
Bsh1236I	CGCG	1 cut(s)	680
BshFI	GGCC	2 cut(s)	480, 823
BshNI	GGYRCC	1 cut(s)	164
BslFI	GGGAC	2 cut(s)	233, 748
BslI	CCNNNNNNNGG	2 cut(s)	398, 502
BsmAI	GTCTC	1 cut(s)	164
BsmFI	GGGAC	2 cut(s)	233, 748
BsnI	GGCC	2 cut(s)	480, 823
Bsp143I	GATC	7 cut(s)	229, 274, 313, 322, 343, 712, 770
Bsp1720I	GCTNAGC	1 cut(s)	471
BspACI	CCGC	1 cut(s)	593
BspANI	GGCC	2 cut(s)	480, 823
BspCNI	CTCAG	2 cut(s)	53, 534
BspFNI	CGCG	1 cut(s)	680
BspHI	TCATGA	2 cut(s)	178, 226
BspLI	GGNNCC	1 cut(s)	166
BspMAI	CTGCAG	3 cut(s)	256, 636, 673
BspPI	GGATC	1 cut(s)	707
BspT107I	GGYRCC	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	7 cut(s)	229, 274, 313, 322, 343, 712, 770
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst2UI	CCWGG	2 cut(s)	567, 702
Bst4CI	ACNGT	2 cut(s)	140, 500
Bst6I	CTCTTC	1 cut(s)	514
BstACI	GRCGYC	1 cut(s)	165
BstC8I	GCNNGC	4 cut(s)	31, 100, 551, 676
BstDEI	CTNAG	3 cut(s)	40, 471, 542
BstF5I	GGATG	1 cut(s)	66
BstFNI	CGCG	1 cut(s)	680
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	167, 680
BstKTI	GATC	7 cut(s)	232, 277, 316, 325, 346, 715, 773
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	7 cut(s)	229, 274, 313, 322, 343, 712, 770
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	2 cut(s)	567, 702
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	2 cut(s)	565, 700
BstSFI	CTRYAG	4 cut(s)	252, 357, 632, 669
BstUI	CGCG	1 cut(s)	680
BstV1I	GCAGC	3 cut(s)	114, 266, 683
BstX2I	RGATCY	1 cut(s)	712
BstYI	RGATCY	1 cut(s)	712
BsuRI	GGCC	2 cut(s)	480, 823
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	629
BtsIMutI	CAGTG	2 cut(s)	270, 629
Cac8I	GCNNGC	4 cut(s)	31, 100, 551, 676
CaiI	CAGNNNCTG	1 cut(s)	631
CciI	TCATGA	2 cut(s)	178, 226
CfoI	GCGC	2 cut(s)	167, 680
Cfr13I	GGNCC	1 cut(s)	281
CsiI	ACCWGGT	1 cut(s)	700
Csp6I	GTAC	3 cut(s)	10, 682, 752
CviQI	GTAC	3 cut(s)	10, 682, 752
DdeI	CTNAG	3 cut(s)	40, 471, 542
DinI	GGCGCC	1 cut(s)	166
DpnI	GATC	7 cut(s)	231, 276, 315, 324, 345, 714, 772
DpnII	GATC	7 cut(s)	229, 274, 313, 322, 343, 712, 770
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	565, 700
EcoT22I	ATGCAT	1 cut(s)	745
EgeI	GGCGCC	1 cut(s)	166
EheI	GGCGCC	1 cut(s)	166
FaqI	GGGAC	2 cut(s)	233, 748
FauNDI	CATATG	1 cut(s)	745
FbaI	TGATCA	4 cut(s)	229, 274, 313, 343
Fnu4HI	GCNGC	3 cut(s)	103, 255, 672
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	3 cut(s)	103, 255, 672
FspBI	CTAG	1 cut(s)	62
GlaI	GCGC	2 cut(s)	166, 679
GluI	GCNGC	3 cut(s)	103, 255, 672
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	480, 823
HhaI	GCGC	2 cut(s)	167, 680
Hin1I	GRCGYC	1 cut(s)	165
Hin6I	GCGC	2 cut(s)	165, 678
HinP1I	GCGC	2 cut(s)	165, 678
HincII	GTYRAC	1 cut(s)	721
HindII	GTYRAC	1 cut(s)	721
HinfI	GANTC	4 cut(s)	157, 211, 297, 637
HphI	GGTGA	2 cut(s)	607, 690
Hpy166II	GTNNAC	1 cut(s)	721
Hpy188I	TCNGA	2 cut(s)	294, 775
Hpy188III	TCNNGA	5 cut(s)	62, 179, 227, 284, 311
Hpy8I	GTNNAC	1 cut(s)	721
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	140, 500
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	8 cut(s)	33, 254, 553, 634, 671, 710, 730, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	3 cut(s)	40, 471, 542
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	1 cut(s)	165
HspAI	GCGC	2 cut(s)	165, 678
KasI	GGCGCC	1 cut(s)	164
Ksp22I	TGATCA	4 cut(s)	229, 274, 313, 343
Kzo9I	GATC	7 cut(s)	229, 274, 313, 322, 343, 712, 770
LpnPI	CCDG	9 cut(s)	9, 264, 297, 552, 563, 579, 687, 714, 716
Lsp1109I	GCAGC	3 cut(s)	114, 266, 683
LweI	GCATC	2 cut(s)	536, 588
MabI	ACCWGGT	1 cut(s)	700
MaeI	CTAG	1 cut(s)	62
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	2 cut(s)	617, 627
MalI	GATC	7 cut(s)	231, 276, 315, 324, 345, 714, 772
MboI	GATC	7 cut(s)	229, 274, 313, 322, 343, 712, 770
MboII	GAAGA	2 cut(s)	414, 531
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	5 cut(s)	16, 112, 339, 642, 694
Mly113I	GGCGCC	1 cut(s)	165
MlyI	GAGTC	2 cut(s)	166, 205
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	8 cut(s)	49, 252, 392, 445, 470, 742, 782, 785
Mph1103I	ATGCAT	1 cut(s)	745
MseI	TTAA	2 cut(s)	14, 120
MslI	CAYNNNNRTG	4 cut(s)	177, 225, 330, 461
MspR9I	CCNGG	2 cut(s)	567, 702
MvaI	CCWGG	2 cut(s)	567, 702
MvnI	CGCG	1 cut(s)	680
MwoI	GCNNNNNNNGC	1 cut(s)	677
NarI	GGCGCC	1 cut(s)	165
NdeI	CATATG	1 cut(s)	745
NdeII	GATC	7 cut(s)	229, 274, 313, 322, 343, 712, 770
NlaIV	GGNNCC	1 cut(s)	166
NmeAIII	GCCGAG	1 cut(s)	141
NmuCI	GTSAC	1 cut(s)	627
NsiI	ATGCAT	1 cut(s)	745
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PagI	TCATGA	2 cut(s)	178, 226
PfeI	GAWTC	2 cut(s)	297, 637
PflMI	CCANNNNNTGG	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	104, 256, 673
PleI	GAGTC	2 cut(s)	165, 205
PluTI	GGCGCC	1 cut(s)	168
PpsI	GAGTC	2 cut(s)	165, 205
Psp6I	CCWGG	2 cut(s)	565, 700
PspGI	CCWGG	2 cut(s)	565, 700
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	281
PstI	CTGCAG	3 cut(s)	256, 636, 673
PstNI	CAGNNNCTG	1 cut(s)	631
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	3 cut(s)	11, 683, 753
RsaNI	GTAC	3 cut(s)	10, 682, 752
RseI	CAYNNNNRTG	4 cut(s)	177, 225, 330, 461
SaqAI	TTAA	2 cut(s)	14, 120
SatI	GCNGC	3 cut(s)	103, 255, 672
Sau3AI	GATC	7 cut(s)	229, 274, 313, 322, 343, 712, 770
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	2 cut(s)	166, 205
ScrFI	CCNGG	2 cut(s)	567, 702
SexAI	ACCWGGT	1 cut(s)	700
SfaNI	GCATC	2 cut(s)	536, 588
SfcI	CTRYAG	4 cut(s)	252, 357, 632, 669
SfoI	GGCGCC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	4 cut(s)	177, 225, 330, 461
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	5 cut(s)	16, 112, 339, 642, 694
SsiI	CCGC	1 cut(s)	593
SspDI	GGCGCC	1 cut(s)	164
SspMI	CTAG	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	565, 700
TaaI	ACNGT	2 cut(s)	140, 500
TaiI	ACGT	1 cut(s)	624
TasI	AATT	5 cut(s)	16, 112, 339, 642, 694
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	297, 637
Tru1I	TTAA	2 cut(s)	14, 120
Tru9I	TTAA	2 cut(s)	14, 120
TscAI	CASTG	2 cut(s)	277, 636
TseFI	GTSAC	1 cut(s)	627
TseI	GCWGC	3 cut(s)	102, 254, 671
Tsp45I	GTSAC	1 cut(s)	627
TspDTI	ATGAA	4 cut(s)	195, 275, 449, 674
TspRI	CASTG	2 cut(s)	277, 636
Van91I	CCANNNNNTGG	1 cut(s)	502
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	1 cut(s)	16
XbaI	TCTAGA	1 cut(s)	61
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.