Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Forward (+)

55989713 .. 55991527

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G029310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTCATGTACTTAAGTTTACCAGGGGCATGCAAAACCTCAAACATATTTCTTTCTAGACATCCCACACTACTACTTGATCTCCAAGCGAGCAACAGTCTCTGTGAGTTGGAGAGTCTCGGCGCCAATCATCATCATGGAATCATGGCTCTCTCCACTGACAGCTTTACTCCTCATCATCATCATGATCAGCAACAACCTCAAGTCCCTGCAGCTATGAACTTCAGCACTGATCATAGTCATGATATTCAGAGATTTTCTCATTCTCATGATCGAAATGATGCTCATCATCATCATGTCCTAATTGCTCAATCAACAGCTGCAGATTTTGGCGAACAAAGCCAAATGGAAAAGCCATTGGGAGGAAGAAAGAGAAAGAGAAGCAATAGTGATAAAGATATGGACAAACCAAAAGAGGTCATTCATGTGAGAGCTAAGCGAGGCCAAGCTACTGATAGCCACAGTTTGGCAGAAAGGGTAAGAAGAGAAAAAATAAATGAAAGGCTGAGATGCCTGCAAAATCTTGTTCCAGGGTGCTATAAGACAATGGGAATGGCAGTAATGCTGGATGTGGTTATCAGTTACGTTCAGTCACTGCAGAATCAAATTGAGTTTCTCTCTATGAAGCTTTCTGCAGCAAGCTTGTATTATGATTTCAATTCACCAGGTCATGCAGATCCTGTTGACACAACGCAGGGGACAAGTGCATATGAGGTACAAGAGAATATGGTAAGATCAGAGCAAGGGTATGGAGGAGGAGGAGGACTTTCTTTTAGCCAATCAACATCGTGGCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

266

Amino Acids

29.7

Weight (kDa)

6.67

Isoelectric Point (pI)

48.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	122
AccB7I	CCANNNNNTGG	1 cut(s)	466
AclWI	GGATC	1 cut(s)	671
AcuI	CTGAAG	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	11, 717
AfiI	CCNNNNNNNGG	2 cut(s)	362, 466
AflII	CTTAAG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	658
AjnI	CCWGG	3 cut(s)	22, 529, 664
AluBI	AGCT	7 cut(s)	165, 215, 320, 434, 449, 628, 642
AluI	AGCT	7 cut(s)	165, 215, 320, 434, 449, 628, 642
Alw26I	GTCTC	2 cut(s)	104, 122
AlwI	GGATC	1 cut(s)	671
AlwNI	CAGNNNCTG	3 cut(s)	102, 595, 680
AoxI	GGCC	2 cut(s)	442, 791
ApeKI	GCWGC	3 cut(s)	212, 320, 635
AspLEI	GCGC	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	654
BanI	GGYRCC	1 cut(s)	122
BbvI	GCAGC	3 cut(s)	224, 307, 647
BciT130I	CCWGG	3 cut(s)	24, 531, 666
BclI	TGATCA	2 cut(s)	187, 232
BcoDI	GTCTC	2 cut(s)	104, 122
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	4 cut(s)	210, 321, 596, 633
BfoI	RGCGCY	1 cut(s)	126
BfrI	CTTAAG	1 cut(s)	13
BisI	GCNGC	3 cut(s)	213, 321, 636
BlpI	GCTNAGC	1 cut(s)	435
BlsI	GCNGC	3 cut(s)	214, 322, 637
Bme1390I	CCNGG	3 cut(s)	24, 531, 666
BmiI	GGNNCC	1 cut(s)	124
BmrFI	CCNGG	3 cut(s)	24, 531, 666
BmsI	GCATC	2 cut(s)	271, 500
BplI	GAGNNNNNCTC	4 cut(s)	244, 276, 602, 634
Bpu1102I	GCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	23, 530
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 466
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	3 cut(s)	24, 531, 666
BseDI	CCNNGG	2 cut(s)	23, 530
BseGI	GGATG	2 cut(s)	61, 574
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	2 cut(s)	362, 466
BseMII	CTCAG	1 cut(s)	497
BseRI	GAGGAG	4 cut(s)	162, 768, 771, 774
BseXI	GCAGC	3 cut(s)	224, 307, 647
BshFI	GGCC	2 cut(s)	444, 793
BshNI	GGYRCC	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	191, 712
BslI	CCNNNNNNNGG	2 cut(s)	362, 466
BsmAI	GTCTC	2 cut(s)	104, 122
BsmFI	GGGAC	2 cut(s)	191, 712
BsnI	GGCC	2 cut(s)	444, 793
Bsp143I	GATC	6 cut(s)	79, 187, 232, 271, 676, 734
Bsp1720I	GCTNAGC	1 cut(s)	435
BspANI	GGCC	2 cut(s)	444, 793
BspCNI	CTCAG	1 cut(s)	498
BspHI	TCATGA	3 cut(s)	184, 241, 268
BspLI	GGNNCC	1 cut(s)	124
BspMAI	CTGCAG	4 cut(s)	214, 325, 600, 637
BspPI	GGATC	1 cut(s)	671
BspT107I	GGYRCC	1 cut(s)	122
BspTI	CTTAAG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	23, 530
BssMI	GATC	6 cut(s)	79, 187, 232, 271, 676, 734
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	24, 531, 666
Bst4CI	ACNGT	2 cut(s)	98, 464
Bst6I	CTCTTC	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	123
BstAFI	CTTAAG	1 cut(s)	13
BstC8I	GCNNGC	4 cut(s)	31, 91, 515, 640
BstDEI	CTNAG	2 cut(s)	435, 506
BstF5I	GGATG	2 cut(s)	61, 574
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	6 cut(s)	82, 190, 235, 274, 679, 737
BstMAI	GTCTC	2 cut(s)	104, 122
BstMBI	GATC	6 cut(s)	79, 187, 232, 271, 676, 734
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	3 cut(s)	24, 531, 666
BstNSI	RCATGY	1 cut(s)	33
BstSCI	CCNGG	3 cut(s)	22, 529, 664
BstSFI	CTRYAG	4 cut(s)	210, 321, 596, 633
BstV1I	GCAGC	3 cut(s)	224, 307, 647
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	2 cut(s)	444, 793
BtsCI	GGATG	2 cut(s)	61, 574
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	3 cut(s)	156, 228, 593
Cac8I	GCNNGC	4 cut(s)	31, 91, 515, 640
CaiI	CAGNNNCTG	3 cut(s)	102, 595, 680
CciI	TCATGA	3 cut(s)	184, 241, 268
CfoI	GCGC	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	664
Csp6I	GTAC	2 cut(s)	10, 716
CviQI	GTAC	2 cut(s)	10, 716
DdeI	CTNAG	2 cut(s)	435, 506
DinI	GGCGCC	1 cut(s)	124
DpnI	GATC	6 cut(s)	81, 189, 234, 273, 678, 736
DpnII	GATC	6 cut(s)	79, 187, 232, 271, 676, 734
Eam1104I	CTCTTC	1 cut(s)	478
EarI	CTCTTC	1 cut(s)	478
Eco57I	CTGAAG	1 cut(s)	208
EcoRII	CCWGG	3 cut(s)	22, 529, 664
EgeI	GGCGCC	1 cut(s)	124
EheI	GGCGCC	1 cut(s)	124
FaqI	GGGAC	2 cut(s)	191, 712
FauNDI	CATATG	1 cut(s)	709
FbaI	TGATCA	2 cut(s)	187, 232
Fnu4HI	GCNGC	3 cut(s)	213, 321, 636
FokI	GGATG	2 cut(s)	48, 581
Fsp4HI	GCNGC	3 cut(s)	213, 321, 636
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	124
GluI	GCNGC	3 cut(s)	213, 321, 636
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	444, 793
HhaI	GCGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HindIII	AAGCTT	2 cut(s)	626, 640
HinfI	GANTC	3 cut(s)	115, 141, 601
HphI	GGTGA	1 cut(s)	654
Hpy166II	GTNNAC	2 cut(s)	20, 685
Hpy188I	TCNGA	2 cut(s)	252, 739
Hpy188III	TCNNGA	4 cut(s)	57, 185, 242, 269
Hpy8I	GTNNAC	2 cut(s)	20, 685
HpyCH4III	ACNGT	2 cut(s)	98, 464
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	8 cut(s)	33, 212, 323, 517, 598, 635, 674, 707
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	2 cut(s)	435, 506
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	1 cut(s)	123
KasI	GGCGCC	1 cut(s)	122
Ksp22I	TGATCA	2 cut(s)	187, 232
Kzo9I	GATC	6 cut(s)	79, 187, 232, 271, 676, 734
Lsp1109I	GCAGC	3 cut(s)	224, 307, 647
LweI	GCATC	2 cut(s)	271, 500
MabI	ACCWGGT	1 cut(s)	664
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	581, 591
MalI	GATC	6 cut(s)	81, 189, 234, 273, 678, 736
MboI	GATC	6 cut(s)	79, 187, 232, 271, 676, 734
MboII	GAAGA	2 cut(s)	378, 495
MflI	RGATCY	1 cut(s)	676
MluCI	AATT	3 cut(s)	303, 606, 658
Mly113I	GGCGCC	1 cut(s)	123
MlyI	GAGTC	1 cut(s)	124
MmeI	TCCRAC	1 cut(s)	90
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	6 cut(s)	135, 183, 240, 267, 294, 425
MspA1I	CMGCKG	1 cut(s)	320
MspCI	CTTAAG	1 cut(s)	13
MspR9I	CCNGG	3 cut(s)	24, 531, 666
MvaI	CCWGG	3 cut(s)	24, 531, 666
MwoI	GCNNNNNNNGC	1 cut(s)	339
NarI	GGCGCC	1 cut(s)	123
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	6 cut(s)	79, 187, 232, 271, 676, 734
NlaIV	GGNNCC	1 cut(s)	124
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	33
PagI	TCATGA	3 cut(s)	184, 241, 268
PfeI	GAWTC	2 cut(s)	141, 601
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	214, 322, 637
PleI	GAGTC	1 cut(s)	123
PluTI	GGCGCC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	123
Psp6I	CCWGG	3 cut(s)	22, 529, 664
PspGI	CCWGG	3 cut(s)	22, 529, 664
PspN4I	GGNNCC	1 cut(s)	124
PstI	CTGCAG	4 cut(s)	214, 325, 600, 637
PstNI	CAGNNNCTG	3 cut(s)	102, 595, 680
PsuI	RGATCY	1 cut(s)	676
PvuII	CAGCTG	1 cut(s)	320
RsaI	GTAC	2 cut(s)	11, 717
RsaNI	GTAC	2 cut(s)	10, 716
RseI	CAYNNNNRTG	6 cut(s)	135, 183, 240, 267, 294, 425
SaqAI	TTAA	1 cut(s)	14
SatI	GCNGC	3 cut(s)	213, 321, 636
Sau3AI	GATC	6 cut(s)	79, 187, 232, 271, 676, 734
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	3 cut(s)	24, 531, 666
SexAI	ACCWGGT	1 cut(s)	664
SfaNI	GCATC	2 cut(s)	271, 500
SfcI	CTRYAG	4 cut(s)	210, 321, 596, 633
SfoI	GGCGCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	6 cut(s)	135, 183, 240, 267, 294, 425
SmlI	CTYRAG	2 cut(s)	13, 201
SmoI	CTYRAG	2 cut(s)	13, 201
SphI	GCATGC	1 cut(s)	33
Sse9I	AATT	3 cut(s)	303, 606, 658
SspDI	GGCGCC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	3 cut(s)	22, 529, 664
TaaI	ACNGT	2 cut(s)	98, 464
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	1 cut(s)	274
TasI	AATT	3 cut(s)	303, 606, 658
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	2 cut(s)	141, 601
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
TscAI	CASTG	3 cut(s)	163, 235, 600
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	3 cut(s)	212, 320, 635
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	4 cut(s)	233, 413, 513, 638
TspRI	CASTG	3 cut(s)	163, 235, 600
Van91I	CCANNNNNTGG	1 cut(s)	466
Vha464I	CTTAAG	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	56
XceI	RCATGY	1 cut(s)	33
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.