Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Reverse (-)

45316306 .. 45318164

Gene Structure 1859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0280100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCATCGACCTCAGAGAGTCTCTTCCTCTTCTACTCTTCTAGTCTTCTTCTTCCAAAAAGTCTTCAATTCCAAGCTCAAATACAACTCTTCTAGTCTTTTTCTTCCTCTCCTGAAATTGCAGTTCGTTGGGTTTGTGTTTGGAGCAAGGCCAAAAGGTAATTTAAGACTGAATGAGCACTTTTCTGGGTTGACGAAATTGGGAATGCTGGGTTGCTGCAATCCTTGGATTGGTGGAGCACTCTTAAGGTACATGATATGTACAACTGCGATCGGACTGGCCTACGCGCGCATTGCTGCAAATTCCATTAGCAGTACTCTACTTCTTGTGAACAGGGAAACGGCTAGTAGAACACGATGGAGTTGTTCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

124

Amino Acids

13.8

Weight (kDa)

10.74

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	287, 289
AcsI	RAATTY	1 cut(s)	301
AfaI	GTAC	3 cut(s)	251, 262, 316
AfiI	CCNNNNNNNGG	1 cut(s)	230
AflII	CTTAAG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	1 cut(s)	76
AluI	AGCT	1 cut(s)	76
Alw21I	GWGCWC	2 cut(s)	180, 241
Alw26I	GTCTC	1 cut(s)	25
AoxI	GGCC	2 cut(s)	149, 279
ApeKI	GCWGC	2 cut(s)	216, 296
ApoI	RAATTY	1 cut(s)	301
AspLEI	GCGC	2 cut(s)	289, 291
BbsI	GAAGAC	2 cut(s)	37, 55
Bbv12I	GWGCWC	2 cut(s)	180, 241
BbvI	GCAGC	2 cut(s)	203, 283
BccI	CCATC	1 cut(s)	351
BceAI	ACGGC	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	25
BfaI	CTAG	3 cut(s)	41, 93, 345
BfrI	CTTAAG	1 cut(s)	244
BisI	GCNGC	2 cut(s)	217, 297
BlsI	GCNGC	2 cut(s)	218, 298
BmcAI	AGTACT	1 cut(s)	316
BmsI	GCATC	1 cut(s)	13
BpiI	GAAGAC	2 cut(s)	37, 55
BsaJI	CCNNGG	1 cut(s)	224
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	282
Bse3DI	GCAATG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	282
BsePI	GCGCGC	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	203, 283
BseYI	CCCAGC	1 cut(s)	208
Bsh1236I	CGCG	2 cut(s)	287, 289
Bsh1285I	CGRYCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	151, 281
BsiEI	CGRYCG	1 cut(s)	273
BsiHKAI	GWGCWC	2 cut(s)	180, 241
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	25
BsmI	GAATGC	1 cut(s)	210
BsnI	GGCC	2 cut(s)	151, 281
Bsp1286I	GDGCHC	2 cut(s)	180, 241
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	270
BspANI	GGCC	2 cut(s)	151, 281
BspCNI	CTCAG	1 cut(s)	25
BspFNI	CGCG	2 cut(s)	287, 289
BspTI	CTTAAG	1 cut(s)	244
BsrDI	GCAATG	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	282
BssECI	CCNNGG	1 cut(s)	224
BssHII	GCGCGC	1 cut(s)	287
BssMI	GATC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	224
Bst6I	CTCTTC	4 cut(s)	28, 34, 42, 94
BstAFI	CTTAAG	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	12
BstFNI	CGCG	2 cut(s)	287, 289
BstHHI	GCGC	2 cut(s)	289, 291
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	270
BstMCI	CGRYCG	1 cut(s)	273
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstUI	CGCG	2 cut(s)	287, 289
BstV1I	GCAGC	2 cut(s)	203, 283
BstV2I	GAAGAC	2 cut(s)	37, 55
BsuRI	GGCC	2 cut(s)	151, 281
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	2 cut(s)	289, 291
Csp6I	GTAC	3 cut(s)	250, 261, 315
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	4 cut(s)	76, 151, 281, 344
CviKI_1	RGCY	4 cut(s)	76, 151, 281, 344
CviQI	GTAC	3 cut(s)	250, 261, 315
DdeI	CTNAG	1 cut(s)	12
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eam1104I	CTCTTC	4 cut(s)	28, 34, 42, 94
EarI	CTCTTC	4 cut(s)	28, 34, 42, 94
Eco130I	CCWWGG	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	224
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	224
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	254, 259
FatI	CATG	1 cut(s)	252
Fnu4HI	GCNGC	2 cut(s)	217, 297
Fsp4HI	GCNGC	2 cut(s)	217, 297
FspBI	CTAG	3 cut(s)	41, 93, 345
GlaI	GCGC	2 cut(s)	288, 290
GluI	GCNGC	2 cut(s)	217, 297
GsaI	CCCAGC	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	151, 281
HhaI	GCGC	2 cut(s)	289, 291
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	2 cut(s)	287, 289
HinP1I	GCGC	2 cut(s)	287, 289
HincII	GTYRAC	1 cut(s)	192
HindII	GTYRAC	1 cut(s)	192
HinfI	GANTC	1 cut(s)	18
Hpy166II	GTNNAC	2 cut(s)	192, 331
Hpy188I	TCNGA	2 cut(s)	15, 275
Hpy188III	TCNNGA	1 cut(s)	112
Hpy8I	GTNNAC	2 cut(s)	192, 331
HpyCH4V	TGCA	4 cut(s)	4, 121, 219, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	2 cut(s)	287, 289
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	2 cut(s)	143, 236
LpnPI	CCDG	5 cut(s)	125, 171, 194, 263, 319
Lsp1109I	GCAGC	2 cut(s)	203, 283
LweI	GCATC	1 cut(s)	13
MaeI	CTAG	3 cut(s)	41, 93, 345
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	9 cut(s)	15, 21, 29, 37, 40, 43, 55, 81, 95
MhlI	GDGCHC	2 cut(s)	180, 241
MluCI	AATT	5 cut(s)	67, 116, 160, 197, 301
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	21, 37, 117
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	164, 245
MspCI	CTTAAG	1 cut(s)	244
Mva1269I	GAATGC	1 cut(s)	210
MvnI	CGCG	2 cut(s)	287, 289
MwoI	GCNNNNNNNGC	1 cut(s)	293
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	6
PauI	GCGCGC	1 cut(s)	287
PctI	GAATGC	1 cut(s)	210
PkrI	GCNGC	2 cut(s)	218, 298
Ple19I	CGATCG	1 cut(s)	273
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	208
PteI	GCGCGC	1 cut(s)	287
PvuI	CGATCG	1 cut(s)	273
RsaI	GTAC	3 cut(s)	251, 262, 316
RsaNI	GTAC	3 cut(s)	250, 261, 315
SaqAI	TTAA	2 cut(s)	164, 245
SatI	GCNGC	2 cut(s)	217, 297
Sau3AI	GATC	1 cut(s)	270
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	1 cut(s)	27
SduI	GDGCHC	2 cut(s)	180, 241
SetI	ASST	4 cut(s)	13, 78, 160, 251
SfaNI	GCATC	1 cut(s)	13
SmlI	CTYRAG	1 cut(s)	244
SmoI	CTYRAG	1 cut(s)	244
Sse9I	AATT	5 cut(s)	67, 116, 160, 197, 301
SspMI	CTAG	3 cut(s)	41, 93, 345
StyI	CCWWGG	1 cut(s)	224
TaqI	TCGA	1 cut(s)	7
TasI	AATT	5 cut(s)	67, 116, 160, 197, 301
TatI	WGTACW	2 cut(s)	260, 314
Tru1I	TTAA	2 cut(s)	164, 245
Tru9I	TTAA	2 cut(s)	164, 245
TseI	GCWGC	2 cut(s)	216, 296
Vha464I	CTTAAG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	301
XspI	CTAG	3 cut(s)	41, 93, 345
ZrmI	AGTACT	1 cut(s)	316
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.