Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Forward (+)

56107337 .. 56109958

Gene Structure 2622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG338400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGAACTGATAGACAGTCTCTGTGAGTTGGAGAGTCTCGGCGCCAATCATCATCATGGAATCATGGCTCTCTCCGCTGACAGCTTTACTCCTCATCATCATCATGATCAGCAACAACCTCAAGTCCCTGCAGCTATGAACTTCAGCACTGATCACAGTCATGATATTCAGAGATTTTCTCATTCTCATGATCGAAATGATGATGATCATCATCATGTCCTAATTGCACAATCAACAGCTGCAGATTTTGGCGAACAAAGCCAAATGGAAAAGCCATTGGGAGGAAGAAAGAGAAAGAGAAGCAATAGTGATAAAGATATGGACAAACCAAAGGAGGTCATTCATGTGAGAGCTAAGCGAGGCCAAGCTACTGATAGCCACAGTTTGGCAGAAAGGGTAAGAAGAGAAAAAATAAATGAAAGGCTGAGATGCCTGCAAAATCTTGTTCCAGGGTGCTATAAGACAATGGGAATGGCAGTAATGCTGGATGTGGTTATCAGTTACGTTCAGTCACTGCAGAATCAAATTGAGGTACTAATTGCTTTATTATTAAACCAAAGTGTCGTGATTAGCTTCTCATATACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

195

Amino Acids

22.12

Weight (kDa)

6.45

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	131 - 178	8e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	385
AciI	CCGC	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	534
AfiI	CCNNNNNNNGG	2 cut(s)	281, 385
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	6 cut(s)	84, 134, 239, 353, 368, 573
AluI	AGCT	6 cut(s)	84, 134, 239, 353, 368, 573
Alw26I	GTCTC	2 cut(s)	23, 41
AlwNI	CAGNNNCTG	2 cut(s)	21, 514
AoxI	GGCC	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	131, 239
AspLEI	GCGC	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	143, 226
BciT130I	CCWGG	1 cut(s)	450
BclI	TGATCA	3 cut(s)	106, 151, 205
BcoDI	GTCTC	2 cut(s)	23, 41
BfmI	CTRYAG	3 cut(s)	129, 240, 515
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	2 cut(s)	132, 240
BlpI	GCTNAGC	1 cut(s)	354
BlsI	GCNGC	2 cut(s)	133, 241
Bme1390I	CCNGG	1 cut(s)	450
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	450
BmsI	GCATC	1 cut(s)	419
BplI	GAGNNNNNCTC	2 cut(s)	163, 195
Bpu1102I	GCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	105
BsaBI	GATNNNNATC	3 cut(s)	204, 207, 210
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	449
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 385
Bse8I	GATNNNNATC	3 cut(s)	204, 207, 210
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	1 cut(s)	449
BseGI	GGATG	1 cut(s)	493
BseJI	GATNNNNATC	3 cut(s)	204, 207, 210
BseLI	CCNNNNNNNGG	2 cut(s)	281, 385
BseMII	CTCAG	1 cut(s)	416
BseRI	GAGGAG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	143, 226
BshFI	GGCC	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	2 cut(s)	281, 385
BsmAI	GTCTC	2 cut(s)	23, 41
BsmFI	GGGAC	1 cut(s)	110
BsnI	GGCC	1 cut(s)	363
Bsp143I	GATC	4 cut(s)	106, 151, 190, 205
Bsp1720I	GCTNAGC	1 cut(s)	354
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	417
BspHI	TCATGA	3 cut(s)	103, 160, 187
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	3 cut(s)	133, 244, 519
BspT107I	GGYRCC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	449
BssMI	GATC	4 cut(s)	106, 151, 190, 205
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	17, 158, 383
Bst6I	CTCTTC	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	354, 425
BstF5I	GGATG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	4 cut(s)	109, 154, 193, 208
BstMAI	GTCTC	2 cut(s)	23, 41
BstMBI	GATC	4 cut(s)	106, 151, 190, 205
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 258
BstNI	CCWGG	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	3 cut(s)	129, 240, 515
BstV1I	GCAGC	2 cut(s)	143, 226
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	493
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	2 cut(s)	147, 512
Cac8I	GCNNGC	1 cut(s)	434
CaiI	CAGNNNCTG	2 cut(s)	21, 514
CciI	TCATGA	3 cut(s)	103, 160, 187
CfoI	GCGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	533
CviAII	CATG	7 cut(s)	56, 64, 104, 161, 188, 215, 344
CviQI	GTAC	1 cut(s)	533
DdeI	CTNAG	2 cut(s)	354, 425
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	4 cut(s)	108, 153, 192, 207
DpnII	GATC	4 cut(s)	106, 151, 190, 205
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	448
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	7 cut(s)	59, 67, 107, 164, 191, 218, 347
FaqI	GGGAC	1 cut(s)	110
FatI	CATG	7 cut(s)	55, 63, 103, 160, 187, 214, 343
FbaI	TGATCA	3 cut(s)	106, 151, 205
Fnu4HI	GCNGC	2 cut(s)	132, 240
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	2 cut(s)	132, 240
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	2 cut(s)	132, 240
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	363
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	7 cut(s)	59, 67, 107, 164, 191, 218, 347
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	3 cut(s)	34, 60, 520
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	4 cut(s)	104, 161, 188, 565
HpyCH4III	ACNGT	3 cut(s)	17, 158, 383
HpyCH4IV	ACGT	1 cut(s)	504
HpyCH4V	TGCA	5 cut(s)	131, 227, 242, 436, 517
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 258
HpyF3I	CTNAG	2 cut(s)	354, 425
HpySE526I	ACGT	1 cut(s)	504
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	7 cut(s)	59, 67, 107, 164, 191, 218, 347
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Ksp22I	TGATCA	3 cut(s)	106, 151, 205
Kzo9I	GATC	4 cut(s)	106, 151, 190, 205
LpnPI	CCDG	5 cut(s)	141, 435, 446, 462, 470
Lsp1109I	GCAGC	2 cut(s)	143, 226
LweI	GCATC	1 cut(s)	419
MaeII	ACGT	1 cut(s)	504
MaeIII	GTNAC	2 cut(s)	500, 510
MalI	GATC	4 cut(s)	108, 153, 192, 207
MboI	GATC	4 cut(s)	106, 151, 190, 205
MboII	GAAGA	2 cut(s)	297, 414
MluCI	AATT	3 cut(s)	222, 525, 537
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	6 cut(s)	102, 129, 275, 328, 353, 523
MseI	TTAA	1 cut(s)	551
MslI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
MspA1I	CMGCKG	2 cut(s)	77, 239
MspR9I	CCNGG	1 cut(s)	450
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	74, 258
NarI	GGCGCC	1 cut(s)	42
NdeII	GATC	4 cut(s)	106, 151, 190, 205
NlaIII	CATG	7 cut(s)	59, 67, 107, 164, 191, 218, 347
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	510
PagI	TCATGA	3 cut(s)	103, 160, 187
PfeI	GAWTC	2 cut(s)	60, 520
PflMI	CCANNNNNTGG	1 cut(s)	385
PkrI	GCNGC	2 cut(s)	133, 241
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	448
PspGI	CCWGG	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	43
PstI	CTGCAG	3 cut(s)	133, 244, 519
PstNI	CAGNNNCTG	2 cut(s)	21, 514
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	534
RsaNI	GTAC	1 cut(s)	533
RseI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	2 cut(s)	132, 240
Sau3AI	GATC	4 cut(s)	106, 151, 190, 205
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	1 cut(s)	450
SfaNI	GCATC	1 cut(s)	419
SfcI	CTRYAG	3 cut(s)	129, 240, 515
SfoI	GGCGCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	6 cut(s)	54, 102, 159, 186, 213, 344
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	3 cut(s)	222, 525, 537
SsiI	CCGC	1 cut(s)	75
SspDI	GGCGCC	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	448
TaaI	ACNGT	3 cut(s)	17, 158, 383
TaiI	ACGT	1 cut(s)	507
TaqI	TCGA	1 cut(s)	193
TasI	AATT	3 cut(s)	222, 525, 537
TfiI	GAWTC	2 cut(s)	60, 520
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	2 cut(s)	154, 519
TseFI	GTSAC	1 cut(s)	510
TseI	GCWGC	2 cut(s)	131, 239
Tsp45I	GTSAC	1 cut(s)	510
TspDTI	ATGAA	3 cut(s)	152, 332, 432
TspRI	CASTG	2 cut(s)	154, 519
Van91I	CCANNNNNTGG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.