Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Reverse (-)

9262885 .. 9264288

Gene Structure 1404 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006637

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAACTGATAGACAGTCTCTGTGAGTTGGAGAGTCTCGGCGCCAATCATCATCATGGAATCATGGCTCTCTCCACTGACAGCTTTACTCATCATCATCATGATCAGCAACAACCTCAAGTCCCTGCAGCTATGAACTCCAGCACCGATCATACTCATGATATTCAGAGATTTTCTCATTCTCATGATCGAAATGATCATCATCATCATCATGTCCTAATTGCTCAATCAACAGCTGCAGATTTTGGCGAACAAAGCCAAATGGAAAAGCCATTGGGAGGAAGAAAGAGAAAGAGAAACAATACTGATAAAGATATGGACAAACCAAAAGAGGTCATTCATGTGAGAGCTAAGCGAGGCCAAGCTACTGATAGCCACAGTTTGGCAGAAAGGGTAAGAAGAGAAAAAATAAATGAAAGGCTGAGATGCCTGCAAAATCTTGTTCCAGGGTGCTATAAGACAATGGGAATGGCAGTAATGCTGGATGTGGTTATCAGTTACGTTCAGTCACTGCAGAATCAAATTGAGTTTCTCTCTATGAAGCTTTCTGCAGCAAGCTTGTATTATGATTTCAATTCACCAGGTCTTGCAGATCCTGTTGACACAACGCAGGGGACAAATGCATATGAGGTACAAGAGAATATGGTAAGATCAGAGCAAGGGTATGGAGGAGAAGGAGGACTTTCTTTTAGCCAATCAACATCGTGGCCTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

239

Amino Acids

26.81

Weight (kDa)

6.2

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	382
AclWI	GGATC	1 cut(s)	587
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	633
AfiI	CCNNNNNNNGG	2 cut(s)	278, 382
AgsI	TTSAA	1 cut(s)	574
AjnI	CCWGG	2 cut(s)	445, 580
AluBI	AGCT	7 cut(s)	84, 131, 236, 350, 365, 544, 558
AluI	AGCT	7 cut(s)	84, 131, 236, 350, 365, 544, 558
Alw26I	GTCTC	2 cut(s)	23, 41
AlwI	GGATC	1 cut(s)	587
AlwNI	CAGNNNCTG	3 cut(s)	21, 511, 596
AoxI	GGCC	2 cut(s)	358, 707
ApeKI	GCWGC	3 cut(s)	128, 236, 551
AspLEI	GCGC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	3 cut(s)	140, 223, 563
BciT130I	CCWGG	2 cut(s)	447, 582
BclI	TGATCA	2 cut(s)	103, 196
BcoDI	GTCTC	2 cut(s)	23, 41
BfmI	CTRYAG	4 cut(s)	126, 237, 512, 549
BfoI	RGCGCY	1 cut(s)	45
BisI	GCNGC	3 cut(s)	129, 237, 552
BlpI	GCTNAGC	1 cut(s)	351
BlsI	GCNGC	3 cut(s)	130, 238, 553
Bme1390I	CCNGG	2 cut(s)	447, 582
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	447, 582
BmsI	GCATC	1 cut(s)	416
BplI	GAGNNNNNCTC	4 cut(s)	160, 192, 518, 550
BpmI	CTGGAG	1 cut(s)	124
Bpu1102I	GCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	102
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 382
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	447, 582
BseDI	CCNNGG	1 cut(s)	446
BseGI	GGATG	1 cut(s)	490
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	2 cut(s)	278, 382
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	140, 223, 563
BshFI	GGCC	2 cut(s)	360, 709
BshNI	GGYRCC	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	107, 628
BslI	CCNNNNNNNGG	2 cut(s)	278, 382
BsmAI	GTCTC	2 cut(s)	23, 41
BsmFI	GGGAC	2 cut(s)	107, 628
BsnI	GGCC	2 cut(s)	360, 709
Bsp143I	GATC	6 cut(s)	103, 148, 187, 196, 592, 650
Bsp1720I	GCTNAGC	1 cut(s)	351
BspANI	GGCC	2 cut(s)	360, 709
BspCNI	CTCAG	1 cut(s)	414
BspHI	TCATGA	3 cut(s)	100, 157, 184
BspLI	GGNNCC	1 cut(s)	43
BspMAI	CTGCAG	4 cut(s)	130, 241, 516, 553
BspPI	GGATC	1 cut(s)	587
BspT107I	GGYRCC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	446
BssMI	GATC	6 cut(s)	103, 148, 187, 196, 592, 650
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	447, 582
Bst4CI	ACNGT	2 cut(s)	17, 380
Bst6I	CTCTTC	1 cut(s)	394
BstACI	GRCGYC	1 cut(s)	42
BstC8I	GCNNGC	2 cut(s)	431, 556
BstDEI	CTNAG	2 cut(s)	351, 422
BstF5I	GGATG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	44
BstKTI	GATC	6 cut(s)	106, 151, 190, 199, 595, 653
BstMAI	GTCTC	2 cut(s)	23, 41
BstMBI	GATC	6 cut(s)	103, 148, 187, 196, 592, 650
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNI	CCWGG	2 cut(s)	447, 582
BstSCI	CCNGG	2 cut(s)	445, 580
BstSFI	CTRYAG	4 cut(s)	126, 237, 512, 549
BstV1I	GCAGC	3 cut(s)	140, 223, 563
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
BsuRI	GGCC	2 cut(s)	360, 709
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	2 cut(s)	75, 509
Cac8I	GCNNGC	2 cut(s)	431, 556
CaiI	CAGNNNCTG	3 cut(s)	21, 511, 596
CciI	TCATGA	3 cut(s)	100, 157, 184
CfoI	GCGC	1 cut(s)	44
CsiI	ACCWGGT	1 cut(s)	580
Csp6I	GTAC	1 cut(s)	632
CviAII	CATG	7 cut(s)	56, 64, 101, 158, 185, 212, 341
CviQI	GTAC	1 cut(s)	632
DdeI	CTNAG	2 cut(s)	351, 422
DinI	GGCGCC	1 cut(s)	43
DpnI	GATC	6 cut(s)	105, 150, 189, 198, 594, 652
DpnII	GATC	6 cut(s)	103, 148, 187, 196, 592, 650
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	445, 580
EcoT22I	ATGCAT	1 cut(s)	625
EgeI	GGCGCC	1 cut(s)	43
EheI	GGCGCC	1 cut(s)	43
FaeI	CATG	7 cut(s)	59, 67, 104, 161, 188, 215, 344
FalI	AAGNNNNNCTT	2 cut(s)	666, 698
FaqI	GGGAC	2 cut(s)	107, 628
FatI	CATG	7 cut(s)	55, 63, 100, 157, 184, 211, 340
FauNDI	CATATG	1 cut(s)	625
FbaI	TGATCA	2 cut(s)	103, 196
Fnu4HI	GCNGC	3 cut(s)	129, 237, 552
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	3 cut(s)	129, 237, 552
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	3 cut(s)	129, 237, 552
GsuI	CTGGAG	1 cut(s)	124
HaeII	RGCGCY	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	360, 709
HhaI	GCGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	7 cut(s)	59, 67, 104, 161, 188, 215, 344
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	2 cut(s)	542, 556
HinfI	GANTC	3 cut(s)	34, 60, 517
HphI	GGTGA	1 cut(s)	570
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	2 cut(s)	168, 655
Hpy188III	TCNNGA	3 cut(s)	101, 158, 185
Hpy8I	GTNNAC	1 cut(s)	601
HpyAV	CCTTC	1 cut(s)	668
HpyCH4III	ACNGT	2 cut(s)	17, 380
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	7 cut(s)	128, 239, 433, 514, 551, 590, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	2 cut(s)	351, 422
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	7 cut(s)	59, 67, 104, 161, 188, 215, 344
HspAI	GCGC	1 cut(s)	42
KasI	GGCGCC	1 cut(s)	41
Ksp22I	TGATCA	2 cut(s)	103, 196
Kzo9I	GATC	6 cut(s)	103, 148, 187, 196, 592, 650
Lsp1109I	GCAGC	3 cut(s)	140, 223, 563
LweI	GCATC	1 cut(s)	416
MabI	ACCWGGT	1 cut(s)	580
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	497, 507
MalI	GATC	6 cut(s)	105, 150, 189, 198, 594, 652
MboI	GATC	6 cut(s)	103, 148, 187, 196, 592, 650
MboII	GAAGA	2 cut(s)	294, 411
MflI	RGATCY	1 cut(s)	592
MluCI	AATT	3 cut(s)	219, 522, 574
Mly113I	GGCGCC	1 cut(s)	42
MlyI	GAGTC	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	7 cut(s)	126, 272, 325, 350, 622, 662, 671
Mph1103I	ATGCAT	1 cut(s)	625
MslI	CAYNNNNRTG	6 cut(s)	54, 99, 156, 183, 210, 341
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	2 cut(s)	447, 582
MvaI	CCWGG	2 cut(s)	447, 582
MwoI	GCNNNNNNNGC	1 cut(s)	255
NarI	GGCGCC	1 cut(s)	42
NdeI	CATATG	1 cut(s)	625
NdeII	GATC	6 cut(s)	103, 148, 187, 196, 592, 650
NlaIII	CATG	7 cut(s)	59, 67, 104, 161, 188, 215, 344
NlaIV	GGNNCC	1 cut(s)	43
NmeAIII	GCCGAG	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	507
NsiI	ATGCAT	1 cut(s)	625
PagI	TCATGA	3 cut(s)	100, 157, 184
PfeI	GAWTC	2 cut(s)	60, 517
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	130, 238, 553
PleI	GAGTC	1 cut(s)	42
PluTI	GGCGCC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	445, 580
PspGI	CCWGG	2 cut(s)	445, 580
PspN4I	GGNNCC	1 cut(s)	43
PstI	CTGCAG	4 cut(s)	130, 241, 516, 553
PstNI	CAGNNNCTG	3 cut(s)	21, 511, 596
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	1 cut(s)	633
RsaNI	GTAC	1 cut(s)	632
RseI	CAYNNNNRTG	6 cut(s)	54, 99, 156, 183, 210, 341
SatI	GCNGC	3 cut(s)	129, 237, 552
Sau3AI	GATC	6 cut(s)	103, 148, 187, 196, 592, 650
SchI	GAGTC	1 cut(s)	43
ScrFI	CCNGG	2 cut(s)	447, 582
SexAI	ACCWGGT	1 cut(s)	580
SfaNI	GCATC	1 cut(s)	416
SfcI	CTRYAG	4 cut(s)	126, 237, 512, 549
SfoI	GGCGCC	1 cut(s)	43
SmiMI	CAYNNNNRTG	6 cut(s)	54, 99, 156, 183, 210, 341
SmlI	CTYRAG	1 cut(s)	117
SmoI	CTYRAG	1 cut(s)	117
Sse9I	AATT	3 cut(s)	219, 522, 574
SspDI	GGCGCC	1 cut(s)	41
StyD4I	CCNGG	2 cut(s)	445, 580
TaaI	ACNGT	2 cut(s)	17, 380
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	1 cut(s)	190
TasI	AATT	3 cut(s)	219, 522, 574
TfiI	GAWTC	2 cut(s)	60, 517
TscAI	CASTG	2 cut(s)	82, 516
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	3 cut(s)	128, 236, 551
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	4 cut(s)	149, 329, 429, 554
TspRI	CASTG	2 cut(s)	82, 516
Van91I	CCANNNNNTGG	1 cut(s)	382
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.