Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Forward (+)

9259432 .. 9261313

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGGTCATCTTGGGTTCTTAGTTATGATTATGGTAGGAGTCATGGCTTCTTCTGTGAGCGGCTACGGTGGCGGTTGGATCAACGCTCACGCCACTTTTTACGGTGGTGGTGATGCTTCCGGCACAATGGGTGGTGCTTGTGGATATGGTAATCTATATAGCCAAGGCTACGGGACGAGCACGGCGGCTCTAAGCACAGCTCTCTTCAACAATGGACTTAGCTGTGGTTCTTGCTTTGAGATAAGATGTGAAAACGATGGTAAATGGTGTTTACCTGGCTCAATCGTTGTAACCGCTACAAACTTCTGCCCGCCAAATAACGCGTTAGCGAACAATAATGGCGGTTGGTGTAATCCTCCTCTTGAACACTTTGACCTTGCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAGAGCTGGAATCGTCCCTGTTTCCTACAGAAGGGTTCCTTGCAGGAGAAGAGGAGGAATAAGATTCACGATAAACGGCCACTCATACTTCAACCTTGTGCTGATCACAAACGTCGGTGGTGCCGGAGACGTTCACTCGGCGGCGATCAAGGGTTCAAGAACAGTGTGGCAAGCTATGTCAAGGAACTGGGGGCAAAATTGGCAAAGCAACTCTTACCTCAACGGTCAAGCACTTTCCTTTAAGGTCACCACCAGCGACGGCCGCACAGTTGTCTCCTTCAACGCCGCTCCTGCCGGCTGGTCTTATGGCCAGACTTTTGCCGGTGGACAGTTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016043 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0042545 GO:0044464 GO:0045229 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

249

Amino Acids

26.43

Weight (kDa)

9.24

Isoelectric Point (pI)

29.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	40 - 162	1.1e-08	EXPB1-like domain 1
DPBB_1	PF03330	71 - 156	1.3e-21	Lytic transglycolase
Expansin_C	PF01357	167 - 244	5.1e-31	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AccBSI	CCGCTC	2 cut(s)	60, 698
AccII	CGCG	1 cut(s)	323
AciI	CCGC	9 cut(s)	60, 72, 185, 294, 311, 342, 551, 673, 696
AclWI	GGATC	1 cut(s)	86
AcoI	YGGCCR	3 cut(s)	487, 670, 718
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	1 cut(s)	441
AflIII	ACRYGT	1 cut(s)	321
AgsI	TTSAA	6 cut(s)	208, 365, 395, 502, 567, 691
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	4 cut(s)	200, 222, 416, 584
AluI	AGCT	4 cut(s)	200, 222, 416, 584
Alw21I	GWGCWC	1 cut(s)	182
Alw26I	GTCTC	2 cut(s)	531, 688
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	3 cut(s)	487, 670, 718
AsuHPI	GGTGA	2 cut(s)	122, 649
BalI	TGGCCA	1 cut(s)	720
BanI	GGYRCC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	182
BccI	CCATC	1 cut(s)	251
BceAI	ACGGC	3 cut(s)	198, 502, 685
BciT130I	CCWGG	1 cut(s)	276
BclI	TGATCA	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	531, 688
BfmI	CTRYAG	1 cut(s)	436
BisI	GCNGC	5 cut(s)	61, 186, 552, 673, 696
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	5 cut(s)	62, 187, 553, 674, 697
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	447, 532
BmrFI	CCNGG	1 cut(s)	276
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	1 cut(s)	103
BmuI	ACTGGG	1 cut(s)	607
Bpu1102I	GCTNAGC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	1 cut(s)	441
Bse118I	RCCGGY	2 cut(s)	704, 731
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	1 cut(s)	399
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	441
BseMI	GCAATG	1 cut(s)	399
BseMII	CTCAG	2 cut(s)	395, 419
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	2 cut(s)	348, 477
BseX3I	CGGCCG	1 cut(s)	670
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	673
BshFI	GGCC	3 cut(s)	489, 672, 720
BshNI	GGYRCC	1 cut(s)	530
BsiEI	CGRYCG	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	182
BsiSI	CCGG	4 cut(s)	120, 534, 705, 732
BslFI	GGGAC	2 cut(s)	187, 410
BslI	CCNNNNNNNGG	1 cut(s)	441
BsmAI	GTCTC	2 cut(s)	531, 688
BsmBI	CGTCTC	1 cut(s)	531
BsmFI	GGGAC	2 cut(s)	187, 410
BsnI	GGCC	3 cut(s)	489, 672, 720
Bsp1286I	GDGCHC	1 cut(s)	182
Bsp143I	GATC	3 cut(s)	78, 513, 555
Bsp1720I	GCTNAGC	1 cut(s)	381
BspACI	CCGC	9 cut(s)	60, 72, 185, 294, 311, 342, 551, 673, 696
BspANI	GGCC	3 cut(s)	489, 672, 720
BspCNI	CTCAG	2 cut(s)	394, 418
BspFNI	CGCG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	447, 532
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	1 cut(s)	530
BsrBI	CCGCTC	2 cut(s)	60, 698
BsrDI	GCAATG	1 cut(s)	399
BsrFI	RCCGGY	2 cut(s)	704, 731
BsrI	ACTGG	1 cut(s)	602
BssAI	RCCGGY	2 cut(s)	704, 731
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	3 cut(s)	78, 513, 555
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	6 cut(s)	68, 104, 574, 635, 679, 741
Bst6I	CTCTTC	2 cut(s)	209, 454
BstC8I	GCNNGC	3 cut(s)	311, 582, 706
BstDEI	CTNAG	5 cut(s)	19, 191, 218, 381, 405
BstEII	GGTNACC	1 cut(s)	655
BstENI	CCTNNNNNAGG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	3 cut(s)	81, 516, 558
BstMAI	GTCTC	2 cut(s)	531, 688
BstMBI	GATC	3 cut(s)	78, 513, 555
BstMCI	CGRYCG	1 cut(s)	673
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 610, 672, 701
BstNI	CCWGG	1 cut(s)	276
BstPI	GGTNACC	1 cut(s)	655
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	436
BstUI	CGCG	1 cut(s)	323
BstZI	CGGCCG	1 cut(s)	670
BsuRI	GGCC	3 cut(s)	489, 672, 720
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	3 cut(s)	311, 582, 706
Cfr10I	RCCGGY	2 cut(s)	704, 731
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	1 cut(s)	43
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	5 cut(s)	19, 191, 218, 381, 405
DpnI	GATC	3 cut(s)	80, 515, 557
DpnII	GATC	3 cut(s)	78, 513, 555
EaeI	YGGCCR	3 cut(s)	487, 670, 718
EagI	CGGCCG	1 cut(s)	670
Eam1104I	CTCTTC	2 cut(s)	209, 454
EarI	CTCTTC	2 cut(s)	209, 454
EclXI	CGGCCG	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	670
Eco91I	GGTNACC	1 cut(s)	655
EcoNI	CCTNNNNNAGG	1 cut(s)	439
EcoO65I	GGTNACC	1 cut(s)	655
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
Esp3I	CGTCTC	1 cut(s)	531
FaeI	CATG	1 cut(s)	46
FaiI	YATR	9 cut(s)	26, 32, 44, 147, 157, 159, 496, 587, 717
FalI	AAGNNNNNCTT	4 cut(s)	433, 465, 607, 639
FaqI	GGGAC	2 cut(s)	187, 410
FatI	CATG	1 cut(s)	42
FauI	CCCGC	1 cut(s)	318
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	5 cut(s)	61, 186, 552, 673, 696
Fsp4HI	GCNGC	5 cut(s)	61, 186, 552, 673, 696
GluI	GCNGC	5 cut(s)	61, 186, 552, 673, 696
HaeIII	GGCC	3 cut(s)	489, 672, 720
HapII	CCGG	4 cut(s)	120, 534, 705, 732
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	3 cut(s)	39, 420, 474
HpaII	CCGG	4 cut(s)	120, 534, 705, 732
HphI	GGTGA	2 cut(s)	122, 649
Hpy166II	GTNNAC	3 cut(s)	272, 544, 737
Hpy188III	TCNNGA	3 cut(s)	362, 478, 567
Hpy8I	GTNNAC	3 cut(s)	272, 544, 737
Hpy99I	CGWCG	2 cut(s)	527, 671
HpyAV	CCTTC	2 cut(s)	435, 697
HpyCH4III	ACNGT	6 cut(s)	68, 104, 574, 635, 679, 741
HpyCH4IV	ACGT	2 cut(s)	522, 540
HpyCH4V	TGCA	1 cut(s)	453
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 610, 672, 701
HpyF3I	CTNAG	5 cut(s)	19, 191, 218, 381, 405
HpySE526I	ACGT	2 cut(s)	522, 540
Hsp92II	CATG	1 cut(s)	46
KroI	GCCGGC	1 cut(s)	704
KroNI	GCCGGC	1 cut(s)	706
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	3 cut(s)	78, 513, 555
LmnI	GCTCC	1 cut(s)	703
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	2 cut(s)	522, 540
MaeIII	GTNAC	2 cut(s)	289, 655
MalI	GATC	3 cut(s)	80, 515, 557
MbiI	CCGCTC	2 cut(s)	60, 698
MboI	GATC	3 cut(s)	78, 513, 555
MboII	GAAGA	3 cut(s)	42, 196, 471
MhlI	GDGCHC	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	720
MluCI	AATT	1 cut(s)	607
MluI	ACGCGT	1 cut(s)	321
MluNI	TGGCCA	1 cut(s)	720
MlyI	GAGTC	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	5 cut(s)	366, 369, 455, 458, 638
Mox20I	TGGCCA	1 cut(s)	720
MroNI	GCCGGC	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	720
MseI	TTAA	2 cut(s)	651, 748
Msp20I	TGGCCA	1 cut(s)	720
MspI	CCGG	4 cut(s)	120, 534, 705, 732
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	4 cut(s)	69, 610, 672, 701
NaeI	GCCGGC	1 cut(s)	706
NdeII	GATC	3 cut(s)	78, 513, 555
NgoMIV	GCCGGC	1 cut(s)	704
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	447, 532
NmeAIII	GCCGAG	1 cut(s)	527
NmuCI	GTSAC	1 cut(s)	655
PdiI	GCCGGC	1 cut(s)	706
PfeI	GAWTC	2 cut(s)	420, 474
PkrI	GCNGC	5 cut(s)	62, 187, 553, 674, 697
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
Psp6I	CCWGG	1 cut(s)	274
PspEI	GGTNACC	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	2 cut(s)	447, 532
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SaqAI	TTAA	2 cut(s)	651, 748
SatI	GCNGC	5 cut(s)	61, 186, 552, 673, 696
Sau3AI	GATC	3 cut(s)	78, 513, 555
SchI	GAGTC	1 cut(s)	48
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	182
SfaNI	GCATC	1 cut(s)	103
SfcI	CTRYAG	1 cut(s)	436
Sse9I	AATT	1 cut(s)	607
SsiI	CCGC	9 cut(s)	60, 72, 185, 294, 311, 342, 551, 673, 696
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	6 cut(s)	68, 104, 574, 635, 679, 741
TaiI	ACGT	2 cut(s)	525, 543
TasI	AATT	1 cut(s)	607
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	5 cut(s)	63, 188, 554, 675, 698
TfiI	GAWTC	2 cut(s)	420, 474
Tru1I	TTAA	2 cut(s)	651, 748
Tru9I	TTAA	2 cut(s)	651, 748
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	1 cut(s)	655
Tsp45I	GTSAC	1 cut(s)	655
TspGWI	ACGGA	1 cut(s)	734
TspRI	CASTG	1 cut(s)	579
XagI	CCTNNNNNAGG	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.