pycom04g15320

Belongs to the expansin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0008203
Physical Location & Seq
Reverse (-)
18224227 .. 18225292
1066 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g15320.2

Sequence Viewer

Length: 768 bp
ATGGCTATGAAAGCAGTGAAGATCCTGCAGTTTCTCTTCTTCATATGCCACTTAAGTCTTCAAGTCACGCGTGCCTCCGATGGCGGATGGCATACTGGTCATGCAACATTTTATGGTGGCAGTGATGCTGTTGGCACAATGGGAGGTGCGTGTGGTTATGGAAACTTGTACAGCCAGGGGTACGGGATTAGCACCGCAGCTCTAAGCACTGCTCTTTTCAACAGTGGTTTGAGTTGCGGAGCGTGTTACCAACTAAGATGCAACCATCAGAGTGACCCCAAATGGTGCCTCCCGGGCGGTGTCATCACTGTCACAGCCACCAACTTCTGTCCTCCTAATAATGCTTTGTCTAACGACAACGGTGGCTGGTGCAACCCTCCTCTTCAACACTTTGATTTGGCTGAGCCTGCTTTCTTGCATATCGCTGAATATCGTGGTGGAATTGTCCCAGTACTCTTTAGAAGGGTTCCATGTCTGAAGAAAGGAGGCATAAGGTTCACCATCAATGGCCACTCATACTTCAACTTGGTTTTGATCACAAATGTTGGGGGTGCAGGGGACGTCCGTGCAGTGTCTATCAAGGGTTCTAGGACAGGGTGGCTACCCATGTCAAGAAACTGGGGCCAGAATTGGCAGAGCAACTCCTACCTCAATGGCCAGAGGCTCTCCTTCAAGGTCACCACTAGCGACGGACGCACCGTCACCAGCTACAATGTCGTGCCGGCTGGTTGGCAGTTTGGACAGACTTTTGAAGGTGGCCAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

256

Amino Acids

27.51

Weight (kDa)

9.12

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 564
AccB1I GGYRCC 1 cut(s) 285
AccII CGCG 1 cut(s) 70
AciI CCGC 4 cut(s) 84, 195, 237, 297
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 3 cut(s) 508, 655, 757
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 1 cut(s) 561
AfaI GTAC 3 cut(s) 170, 182, 453
AflII CTTAAG 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 68
AgsI TTSAA 6 cut(s) 62, 220, 386, 523, 673, 752
AhdI GACNNNNNGTC 1 cut(s) 698
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 2 cut(s) 200, 708
AluI AGCT 2 cut(s) 200, 708
AlwI GGATC 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 292
AoxI GGCC 4 cut(s) 508, 622, 655, 757
ApeKI GCWGC 1 cut(s) 197
AspS9I GGNCC 1 cut(s) 622
AsuC2I CCSGG 2 cut(s) 293, 294
AsuHPI GGTGA 3 cut(s) 490, 670, 694
AvaI CYCGRG 1 cut(s) 292
BalI TGGCCA 3 cut(s) 510, 657, 759
BanI GGYRCC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 209
BccI CCATC 4 cut(s) 74, 81, 273, 509
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 2 cut(s) 293, 294
BfaI CTAG 2 cut(s) 588, 684
BfmI CTRYAG 1 cut(s) 26
BfrI CTTAAG 1 cut(s) 52
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 1 cut(s) 198
BlpI GCTNAGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 199
BmcAI AGTACT 1 cut(s) 453
Bme1390I CCNGG 3 cut(s) 176, 293, 294
BmeRI GACNNNNNGTC 1 cut(s) 698
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 3 cut(s) 287, 468, 623
BmrFI CCNGG 3 cut(s) 176, 293, 294
BmrI ACTGGG 2 cut(s) 443, 628
BmsI GCATC 2 cut(s) 115, 248
BmuI ACTGGG 2 cut(s) 443, 628
BpiI GAAGAC 1 cut(s) 50
Bpu1102I GCTNAGC 1 cut(s) 402
BpuMI CCSGG 2 cut(s) 293, 294
BsaHI GRCGYC 1 cut(s) 561
BsaJI CCNNGG 2 cut(s) 175, 292
Bse118I RCCGGY 1 cut(s) 721
Bse1I ACTGG 4 cut(s) 100, 449, 623, 760
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 175, 292
BseGI GGATG 1 cut(s) 92
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 4 cut(s) 100, 449, 623, 760
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 1 cut(s) 209
BsgI GTGCAG 2 cut(s) 573, 588
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 4 cut(s) 510, 624, 657, 759
BshNI GGYRCC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 2 cut(s) 293, 722
BslFI GGGAC 2 cut(s) 431, 572
BsmFI GGGAC 2 cut(s) 431, 572
BsnI GGCC 4 cut(s) 510, 624, 657, 759
BsoBI CYCGRG 1 cut(s) 292
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 2 cut(s) 21, 534
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 4 cut(s) 84, 195, 237, 297
BspANI GGCC 4 cut(s) 510, 624, 657, 759
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 1 cut(s) 70
BspLI GGNNCC 3 cut(s) 287, 468, 623
BspMAI CTGCAG 1 cut(s) 30
BspPI GGATC 1 cut(s) 16
BspT107I GGYRCC 1 cut(s) 285
BspTI CTTAAG 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 721
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 4 cut(s) 100, 449, 623, 760
BssAI RCCGGY 1 cut(s) 721
BssECI CCNNGG 2 cut(s) 175, 292
BssMI GATC 2 cut(s) 21, 534
BssNI GRCGYC 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 4 cut(s) 224, 310, 362, 700
Bst6I CTCTTC 2 cut(s) 41, 387
BstACI GRCGYC 1 cut(s) 561
BstAFI CTTAAG 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 168
BstC8I GCNNGC 3 cut(s) 72, 408, 723
BstDEI CTNAG 3 cut(s) 203, 254, 402
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 1 cut(s) 92
BstFNI CGCG 1 cut(s) 70
BstKTI GATC 2 cut(s) 24, 537
BstMBI GATC 2 cut(s) 21, 534
BstMWI GCNNNNNNNGC 4 cut(s) 11, 294, 407, 693
BstNI CCWGG 1 cut(s) 176
BstPI GGTNACC 1 cut(s) 676
BstSCI CCNGG 3 cut(s) 174, 291, 292
BstSFI CTRYAG 1 cut(s) 26
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 209
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 4 cut(s) 510, 624, 657, 759
BtsCI GGATG 1 cut(s) 92
BtsI GCAGTG 4 cut(s) 21, 127, 207, 576
BtsIMutI CAGTG 6 cut(s) 21, 127, 207, 229, 306, 576
Cac8I GCNNGC 3 cut(s) 72, 408, 723
Cfr10I RCCGGY 1 cut(s) 721
Cfr13I GGNCC 1 cut(s) 622
Cfr9I CCCGGG 1 cut(s) 292
CseI GACGC 1 cut(s) 702
Csp6I GTAC 3 cut(s) 169, 181, 452
CviAII CATG 3 cut(s) 101, 471, 607
CviQI GTAC 3 cut(s) 169, 181, 452
DdeI CTNAG 3 cut(s) 203, 254, 402
DpnI GATC 2 cut(s) 23, 536
DpnII GATC 2 cut(s) 21, 534
DriI GACNNNNNGTC 1 cut(s) 698
EaeI YGGCCR 3 cut(s) 508, 655, 757
Eam1104I CTCTTC 2 cut(s) 41, 387
Eam1105I GACNNNNNGTC 1 cut(s) 698
EarI CTCTTC 2 cut(s) 41, 387
EciI GGCGGA 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 292
Eco91I GGTNACC 1 cut(s) 676
EcoO65I GGTNACC 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 174
FaeI CATG 3 cut(s) 104, 474, 610
FaqI GGGAC 2 cut(s) 431, 572
FatI CATG 3 cut(s) 100, 470, 606
FauNDI CATATG 1 cut(s) 44
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 588, 684
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 4 cut(s) 510, 624, 657, 759
HapII CCGG 2 cut(s) 293, 722
HgaI GACGC 1 cut(s) 702
Hin1I GRCGYC 1 cut(s) 561
Hin1II CATG 3 cut(s) 104, 474, 610
HpaII CCGG 2 cut(s) 293, 722
HphI GGTGA 3 cut(s) 490, 670, 694
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 3 cut(s) 79, 270, 477
Hpy188III TCNNGA 1 cut(s) 612
Hpy8I GTNNAC 1 cut(s) 498
Hpy99I CGWCG 1 cut(s) 692
HpyAV CCTTC 3 cut(s) 456, 679, 746
HpyCH4III ACNGT 4 cut(s) 224, 310, 362, 700
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 7 cut(s) 28, 104, 261, 372, 418, 554, 569
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 294, 407, 693
HpyF3I CTNAG 3 cut(s) 203, 254, 402
HpySE526I ACGT 1 cut(s) 561
Hsp92I GRCGYC 1 cut(s) 561
Hsp92II CATG 3 cut(s) 104, 474, 610
KroI GCCGGC 1 cut(s) 721
KroNI GCCGGC 1 cut(s) 723
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 2 cut(s) 21, 534
LmnI GCTCC 1 cut(s) 239
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 2 cut(s) 115, 248
MaeI CTAG 2 cut(s) 588, 684
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 6 cut(s) 64, 245, 272, 310, 676, 700
MalI GATC 2 cut(s) 23, 536
MboI GATC 2 cut(s) 21, 534
MboII GAAGA 6 cut(s) 28, 31, 31, 50, 374, 490
MflI RGATCY 1 cut(s) 21
MlsI TGGCCA 3 cut(s) 510, 657, 759
MluCI AATT 2 cut(s) 441, 628
MluI ACGCGT 1 cut(s) 68
MluNI TGGCCA 3 cut(s) 510, 657, 759
MnlI CCTC 9 cut(s) 85, 137, 299, 342, 387, 390, 479, 654, 659
Mox20I TGGCCA 3 cut(s) 510, 657, 759
MroNI GCCGGC 1 cut(s) 721
MscI TGGCCA 3 cut(s) 510, 657, 759
MseI TTAA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 270
Msp20I TGGCCA 3 cut(s) 510, 657, 759
MspCI CTTAAG 1 cut(s) 52
MspI CCGG 2 cut(s) 293, 722
MspR9I CCNGG 3 cut(s) 176, 293, 294
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 4 cut(s) 11, 294, 407, 693
NaeI GCCGGC 1 cut(s) 723
NciI CCSGG 2 cut(s) 293, 294
NdeI CATATG 1 cut(s) 44
NdeII GATC 2 cut(s) 21, 534
NgoMIV GCCGGC 1 cut(s) 721
NlaIII CATG 3 cut(s) 104, 474, 610
NlaIV GGNNCC 3 cut(s) 287, 468, 623
NmuCI GTSAC 5 cut(s) 64, 272, 310, 676, 700
PcsI WCGNNNNNNNCGW 1 cut(s) 696
PdiI GCCGGC 1 cut(s) 723
PkrI GCNGC 1 cut(s) 199
Psp6I CCWGG 1 cut(s) 174
PspEI GGTNACC 1 cut(s) 676
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 3 cut(s) 287, 468, 623
PspPI GGNCC 1 cut(s) 622
PstI CTGCAG 1 cut(s) 30
PsuI RGATCY 1 cut(s) 21
RsaI GTAC 3 cut(s) 170, 182, 453
RsaNI GTAC 3 cut(s) 169, 181, 452
RseI CAYNNNNRTG 1 cut(s) 270
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 2 cut(s) 21, 534
Sau96I GGNCC 1 cut(s) 622
ScaI AGTACT 1 cut(s) 453
ScrFI CCNGG 3 cut(s) 176, 293, 294
SetI ASST 8 cut(s) 148, 202, 497, 564, 651, 678, 710, 757
SfaNI GCATC 2 cut(s) 115, 248
SfcI CTRYAG 1 cut(s) 26
SmaI CCCGGG 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 2 cut(s) 441, 628
SsiI CCGC 4 cut(s) 84, 195, 237, 297
SspMI CTAG 2 cut(s) 588, 684
StyD4I CCNGG 3 cut(s) 174, 291, 292
TaaI ACNGT 4 cut(s) 224, 310, 362, 700
TaiI ACGT 1 cut(s) 564
TasI AATT 2 cut(s) 441, 628
TatI WGTACW 2 cut(s) 168, 451
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 6 cut(s) 21, 127, 214, 229, 313, 576
TseFI GTSAC 5 cut(s) 64, 272, 310, 676, 700
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 5 cut(s) 64, 272, 310, 676, 700
TspDTI ATGAA 2 cut(s) 23, 31
TspGWI ACGGA 2 cut(s) 554, 705
TspMI CCCGGG 1 cut(s) 292
TspRI CASTG 6 cut(s) 21, 127, 214, 229, 313, 576
Vha464I CTTAAG 1 cut(s) 52
XmaI CCCGGG 1 cut(s) 292
XspI CTAG 2 cut(s) 588, 684
ZraI GACGTC 1 cut(s) 562
ZrmI AGTACT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.