Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Forward (+)

8701369 .. 8702786

Gene Structure 1418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42719

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTAAGAAAGCAATGCAGATCCTGCAATTGCTCTTCTTTATGCTGATCCCCTTGACTGGTTGTCAGGGAAGTCGTGGAGAATACGGAGAATGGCAAACTGCACATGCAACATTCTATGGGGGAAGTGATGCTACTGGCACAATGGGAGGTGCATGTGGTTATGGAAACTTGTACAGCCAAGGGTACGGGACTCGCACCGCAGCTCTAAGCACTGCTCTCTTCAACAGTGGTTTGAGCTGCGGAGCATGTTACCAATTGCGATGCAACGACGACCCCAAATGGTGCCTCCATGGTGACATCATTGTCACTGCCACCAACCTCTGCCCACCTAATCAAGCTTTGTCCAACGACAATGGTGGGTGGTGCAATCCTCCTCTTGAACATTTCGATTTGGCTCAGCCTGCTTTCTTGCAGATTGCTGAGTATCGTGCTGGGATTGTCCCTGTACTATTCCGAAGGGTTCCATGTGAGAAGAAAGGAGGCATAAGGTTCACCATCAATGGTCACTCATACTTCAACTTGGTGTTGATAACAAACGTTGGGGGTGCAGGGGATGTTAAAACAGTGTCCATCAAGGGATCTAGGACAGGGTGGCTACCAATGTCAAGAAACTGGGGGCAGAATTGGCAGAGCAATTCCTACCTCAATGGCCAAACCCTCTCCTTCAAAATCACAACCAGTGATGGAGCCACACTCACCCACAATAATGTCGTTCCTGCTGGTTGGCAATTTGGACAGACCTTTGAAGGTGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

254

Amino Acids

27.49

Weight (kDa)

8.36

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	36 - 158	7.2e-08	EXPB1-like domain 1
DPBB_1	PF03330	67 - 151	3.2e-20	Lytic transglycolase
Expansin_C	PF01357	163 - 240	1.3e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	285
AciI	CCGC	2 cut(s)	201, 243
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	3 cut(s)	16, 43, 589
AcoI	YGGCCR	1 cut(s)	652
AfaI	GTAC	3 cut(s)	176, 188, 450
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	5 cut(s)	226, 383, 520, 670, 749
AhdI	GACNNNNNGTC	1 cut(s)	63
AluBI	AGCT	3 cut(s)	206, 240, 341
AluI	AGCT	3 cut(s)	206, 240, 341
AlwI	GGATC	3 cut(s)	16, 43, 589
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	2 cut(s)	203, 240
AsuHPI	GGTGA	3 cut(s)	308, 487, 691
BalI	TGGCCA	1 cut(s)	654
BanI	GGYRCC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BbvI	GCAGC	2 cut(s)	215, 227
BccI	CCATC	3 cut(s)	506, 581, 680
BfaI	CTAG	2 cut(s)	585, 763
BisI	GCNGC	2 cut(s)	204, 241
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	2 cut(s)	205, 242
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmiI	GGNNCC	3 cut(s)	287, 465, 691
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	121, 254
BmuI	ACTGGG	1 cut(s)	625
BplI	GAGNNNNNCTC	2 cut(s)	681, 713
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	181, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	4 cut(s)	64, 142, 620, 681
Bse3DI	GCAATG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	181, 292
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	413, 414
BseNI	ACTGG	4 cut(s)	64, 142, 620, 681
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	215, 227
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	2 cut(s)	87, 570
BshFI	GGCC	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	285
BslFI	GGGAC	2 cut(s)	205, 428
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	205, 428
BsnI	GGCC	1 cut(s)	654
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	21, 48, 581
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	2 cut(s)	201, 243
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	2 cut(s)	412, 415
BspLI	GGNNCC	3 cut(s)	287, 465, 691
BspPI	GGATC	3 cut(s)	16, 43, 589
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	4 cut(s)	64, 142, 620, 681
BssECI	CCNNGG	2 cut(s)	181, 292
BssMI	GATC	3 cut(s)	21, 48, 581
BssT1I	CCWWGG	2 cut(s)	181, 292
Bst4CI	ACNGT	2 cut(s)	230, 568
Bst6I	CTCTTC	2 cut(s)	41, 227
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	4 cut(s)	6, 209, 399, 423
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	562
BstKTI	GATC	3 cut(s)	24, 51, 584
BstMBI	GATC	3 cut(s)	21, 48, 581
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 25, 404, 628
BstNSI	RCATGY	3 cut(s)	110, 159, 252
BstV1I	GCAGC	2 cut(s)	215, 227
BstX2I	RGATCY	2 cut(s)	21, 581
BstYI	RGATCY	2 cut(s)	21, 581
BsuRI	GGCC	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	2 cut(s)	213, 309
BtsIMutI	CAGTG	5 cut(s)	213, 235, 309, 573, 688
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	175, 187, 449
CviAII	CATG	5 cut(s)	107, 156, 249, 293, 468
CviQI	GTAC	3 cut(s)	175, 187, 449
DdeI	CTNAG	4 cut(s)	6, 209, 399, 423
DpnI	GATC	3 cut(s)	23, 50, 583
DpnII	GATC	3 cut(s)	21, 48, 581
DrdI	GACNNNNNNGTC	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	63
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	2 cut(s)	41, 227
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EarI	CTCTTC	2 cut(s)	41, 227
Eco130I	CCWWGG	2 cut(s)	181, 292
EcoT14I	CCWWGG	2 cut(s)	181, 292
ErhI	CCWWGG	2 cut(s)	181, 292
FaeI	CATG	5 cut(s)	110, 159, 252, 296, 471
FaqI	GGGAC	2 cut(s)	205, 428
FatI	CATG	5 cut(s)	106, 155, 248, 292, 467
Fnu4HI	GCNGC	2 cut(s)	204, 241
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	2 cut(s)	204, 241
FspBI	CTAG	2 cut(s)	585, 763
GluI	GCNGC	2 cut(s)	204, 241
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	654
Hin1II	CATG	5 cut(s)	110, 159, 252, 296, 471
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	3 cut(s)	308, 487, 691
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	2 cut(s)	380, 609
Hpy8I	GTNNAC	1 cut(s)	495
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	453, 676, 743
HpyCH4III	ACNGT	2 cut(s)	230, 568
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	9 cut(s)	19, 28, 104, 110, 155, 267, 369, 415, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 25, 404, 628
HpyF3I	CTNAG	4 cut(s)	6, 209, 399, 423
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	5 cut(s)	110, 159, 252, 296, 471
Kzo9I	GATC	3 cut(s)	21, 48, 581
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	245, 689
Lsp1109I	GCAGC	2 cut(s)	215, 227
LweI	GCATC	2 cut(s)	121, 254
MaeI	CTAG	2 cut(s)	585, 763
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	4 cut(s)	251, 296, 307, 506
MalI	GATC	3 cut(s)	23, 50, 583
MboI	GATC	3 cut(s)	21, 48, 581
MboII	GAAGA	3 cut(s)	28, 214, 487
MfeI	CAATTG	2 cut(s)	29, 257
MflI	RGATCY	2 cut(s)	21, 581
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	6 cut(s)	29, 257, 625, 637, 731, 758
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	8 cut(s)	143, 299, 332, 384, 387, 476, 656, 671
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	654
MunI	CAATTG	2 cut(s)	29, 257
MwoI	GCNNNNNNNGC	4 cut(s)	11, 25, 404, 628
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	21, 48, 581
NlaIII	CATG	5 cut(s)	110, 159, 252, 296, 471
NlaIV	GGNNCC	3 cut(s)	287, 465, 691
NmuCI	GTSAC	3 cut(s)	296, 307, 506
NspI	RCATGY	3 cut(s)	110, 159, 252
PciSI	GCTCTTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	205, 242
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	287, 465, 691
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	21, 581
RsaI	GTAC	3 cut(s)	176, 188, 450
RsaNI	GTAC	3 cut(s)	175, 187, 449
RseI	CAYNNNNRTG	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	2 cut(s)	204, 241
Sau3AI	GATC	3 cut(s)	21, 48, 581
SchI	GAGTC	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	121, 254
SmiMI	CAYNNNNRTG	1 cut(s)	708
Sse9I	AATT	6 cut(s)	29, 257, 625, 637, 731, 758
SsiI	CCGC	2 cut(s)	201, 243
SspMI	CTAG	2 cut(s)	585, 763
StyI	CCWWGG	2 cut(s)	181, 292
TaaI	ACNGT	2 cut(s)	230, 568
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	1 cut(s)	390
TasI	AATT	6 cut(s)	29, 257, 625, 637, 731, 758
TatI	WGTACW	2 cut(s)	174, 448
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	5 cut(s)	220, 235, 316, 573, 688
TseFI	GTSAC	3 cut(s)	296, 307, 506
TseI	GCWGC	2 cut(s)	203, 240
Tsp45I	GTSAC	3 cut(s)	296, 307, 506
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	5 cut(s)	220, 235, 316, 573, 688
XceI	RCATGY	3 cut(s)	110, 159, 252
XspI	CTAG	2 cut(s)	585, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.