Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Forward (+)

26141726 .. 26143538

Gene Structure 1813 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G69530.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGCTCTTGTCACCTTCTTGTTTATTGCTACCCTTGGAGCAATGACGTCACATGTCAATGGTTACGCCGGAGGAGGTTGGGTCAACGCACACGCCACATTCTACGGTGGTGGTGATGCTTCCGGCACAATGGGAGGTGCTTGTGGATACGGAAACCTATATAGCCAAGGCTATGGAACCAACACGGCGGCGCTAAGCACGGCTCTATTCAATAATGGTCTAAGTTGTGGTGCTTGCTTCGAGATAAGATGTCAAAACGATGGAAAATGGTGTCTTCCTGGCTCAATTGTCGTCACAGCCACAAACTTTTGCCCTCCTAACAACGCCTTACCGAACAACGCAGGAGGTTGGTGTAACCCTCCTCAGCAGCATTTTGATCTCTCTCAGCCCGTATTTCAACGCATCGCTCAATACAGAGCCGGCATTGTCCCCGTCGCTTACCGAAGAGTGCCGTGCGTGAGAAGAGGAGGAATAAGGTTTACGATAAACGGACACTCTTACTTCAACCTAGTTCTGATCACTAACGTCGGAGGAGCCGGAGATGTTCACTCAGCGATGGTTAAAGGTTCAAGAACTGGATGGCAAGCGATGTCAAGAAACTGGGGACAGAACTGGCAGAGTAACTCTTACCTTAACGGACAATCTCTCTCATTCAAAGTTACAACAAGCGATGGCCAAACCATTGTCTCTAACAACGTTGCTAACGCAGGCTGGTCTTTCGGCCAGACCTTCACAGGTGCGCAGCTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

250

Amino Acids

26.52

Weight (kDa)

9.26

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	31 - 152	1.4e-08	EXPB1-like domain 1
DPBB_1	PF03330	62 - 147	1.2e-23	Lytic transglycolase
Expansin_C	PF01357	158 - 209	5.1e-19	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	50
Acc16I	TGCGCA	1 cut(s)	741
AciI	CCGC	1 cut(s)	188
AclI	AACGTT	1 cut(s)	696
AcoI	YGGCCR	2 cut(s)	673, 721
AcyI	GRCGYC	1 cut(s)	47
AflIII	ACRYGT	1 cut(s)	52
AgsI	TTSAA	5 cut(s)	211, 398, 505, 570, 655
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	1 cut(s)	745
AluI	AGCT	1 cut(s)	745
Alw26I	GTCTC	1 cut(s)	691
AoxI	GGCC	2 cut(s)	673, 721
ApeKI	GCWGC	2 cut(s)	367, 742
AspLEI	GCGC	2 cut(s)	193, 742
AsuHPI	GGTGA	2 cut(s)	4, 125
BalI	TGGCCA	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	266
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	4 cut(s)	254, 550, 573, 665
BceAI	ACGGC	3 cut(s)	201, 216, 436
BciT130I	CCWGG	1 cut(s)	279
BciVI	GTATCC	1 cut(s)	140
BclI	TGATCA	1 cut(s)	516
BcoDI	GTCTC	1 cut(s)	691
BfaI	CTAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	189, 368, 743
BlpI	GCTNAGC	1 cut(s)	194
BlsI	GCNGC	3 cut(s)	190, 369, 744
Bme1390I	CCNGG	1 cut(s)	279
BmiI	GGNNCC	2 cut(s)	178, 535
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	2 cut(s)	106, 411
BmuI	ACTGGG	1 cut(s)	610
BpiI	GAAGAC	1 cut(s)	266
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	34, 166
BsaXI	ACNNNNNCTCC	2 cut(s)	66, 96
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	3 cut(s)	580, 605, 617
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	34, 166
BseGI	GGATG	1 cut(s)	584
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	377, 398, 564
BseNI	ACTGG	3 cut(s)	580, 605, 617
BseRI	GAGGAG	4 cut(s)	87, 351, 480, 546
BseXI	GCAGC	1 cut(s)	379
BshFI	GGCC	2 cut(s)	675, 723
BsiSI	CCGG	4 cut(s)	69, 123, 420, 537
BslFI	GGGAC	2 cut(s)	413, 618
BsmAI	GTCTC	1 cut(s)	691
BsmFI	GGGAC	2 cut(s)	413, 618
BsnI	GGCC	2 cut(s)	675, 723
Bsp143I	GATC	2 cut(s)	376, 516
Bsp1720I	GCTNAGC	1 cut(s)	194
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	675, 723
BspCNI	CTCAG	3 cut(s)	376, 397, 563
BspLI	GGNNCC	2 cut(s)	178, 535
BsrDI	GCAATG	1 cut(s)	48
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	3 cut(s)	580, 605, 617
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	2 cut(s)	34, 166
BssMI	GATC	2 cut(s)	376, 516
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	2 cut(s)	34, 166
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	439, 457
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	4 cut(s)	235, 421, 585, 709
BstDEI	CTNAG	5 cut(s)	194, 221, 363, 384, 550
BstF5I	GGATG	1 cut(s)	584
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	193, 742
BstKTI	GATC	2 cut(s)	379, 519
BstMAI	GTCTC	1 cut(s)	691
BstMBI	GATC	2 cut(s)	376, 516
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	277
BstV1I	GCAGC	1 cut(s)	379
BstV2I	GAAGAC	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	675, 723
BtgZI	GCGATG	4 cut(s)	388, 569, 602, 684
BtsCI	GGATG	1 cut(s)	584
Cac8I	GCNNGC	4 cut(s)	235, 421, 585, 709
CfoI	GCGC	2 cut(s)	193, 742
Cfr10I	RCCGGY	1 cut(s)	419
CviAII	CATG	1 cut(s)	53
DdeI	CTNAG	5 cut(s)	194, 221, 363, 384, 550
DpnI	GATC	2 cut(s)	378, 518
DpnII	GATC	2 cut(s)	376, 516
EaeI	YGGCCR	2 cut(s)	673, 721
Eam1104I	CTCTTC	2 cut(s)	439, 457
EarI	CTCTTC	2 cut(s)	439, 457
Eco130I	CCWWGG	2 cut(s)	34, 166
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	34, 166
ErhI	CCWWGG	2 cut(s)	34, 166
FaeI	CATG	1 cut(s)	56
FaiI	YATR	4 cut(s)	54, 160, 162, 174
FaqI	GGGAC	2 cut(s)	413, 618
FatI	CATG	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	516
Fnu4HI	GCNGC	3 cut(s)	189, 368, 743
FokI	GGATG	1 cut(s)	591
Fsp4HI	GCNGC	3 cut(s)	189, 368, 743
FspBI	CTAG	1 cut(s)	509
FspI	TGCGCA	1 cut(s)	741
GlaI	GCGC	2 cut(s)	192, 741
GluI	GCNGC	3 cut(s)	189, 368, 743
HaeII	RGCGCY	1 cut(s)	194
HaeIII	GGCC	2 cut(s)	675, 723
HapII	CCGG	4 cut(s)	69, 123, 420, 537
HhaI	GCGC	2 cut(s)	193, 742
Hin1I	GRCGYC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	56
Hin6I	GCGC	2 cut(s)	191, 740
HinP1I	GCGC	2 cut(s)	191, 740
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HpaII	CCGG	4 cut(s)	69, 123, 420, 537
HphI	GGTGA	2 cut(s)	4, 125
Hpy166II	GTNNAC	3 cut(s)	85, 480, 547
Hpy188I	TCNGA	2 cut(s)	516, 530
Hpy188III	TCNNGA	3 cut(s)	241, 570, 594
Hpy8I	GTNNAC	3 cut(s)	85, 480, 547
Hpy99I	CGWCG	2 cut(s)	437, 530
HpyAV	CCTTC	2 cut(s)	25, 739
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4IV	ACGT	4 cut(s)	47, 525, 696, 748
HpyF3I	CTNAG	5 cut(s)	194, 221, 363, 384, 550
HpySE526I	ACGT	4 cut(s)	47, 525, 696, 748
Hsp92I	GRCGYC	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	56
HspAI	GCGC	2 cut(s)	191, 740
KroI	GCCGGC	1 cut(s)	419
KroNI	GCCGGC	1 cut(s)	421
Ksp22I	TGATCA	1 cut(s)	516
Kzo9I	GATC	2 cut(s)	376, 516
LmnI	GCTCC	2 cut(s)	38, 533
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	106, 411
MaeI	CTAG	1 cut(s)	509
MaeII	ACGT	4 cut(s)	47, 525, 696, 748
MaeIII	GTNAC	7 cut(s)	10, 48, 62, 292, 353, 620, 658
MalI	GATC	2 cut(s)	378, 518
MboI	GATC	2 cut(s)	376, 516
MboII	GAAGA	3 cut(s)	266, 456, 474
MfeI	CAATTG	1 cut(s)	285
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	1 cut(s)	285
MluNI	TGGCCA	1 cut(s)	675
MmeI	TCCRAC	1 cut(s)	508
Mox20I	TGGCCA	1 cut(s)	675
MroNI	GCCGGC	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	2 cut(s)	561, 633
MslI	CAYNNNNRTG	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	675
MspI	CCGG	4 cut(s)	69, 123, 420, 537
MspR9I	CCNGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	279
NaeI	GCCGGC	1 cut(s)	421
NdeII	GATC	2 cut(s)	376, 516
NgoMIV	GCCGGC	1 cut(s)	419
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	2 cut(s)	178, 535
NmuCI	GTSAC	3 cut(s)	10, 48, 292
NsbI	TGCGCA	1 cut(s)	741
NspI	RCATGY	1 cut(s)	56
PciI	ACATGT	1 cut(s)	52
PdiI	GCCGGC	1 cut(s)	421
PkrI	GCNGC	3 cut(s)	190, 369, 744
PscI	ACATGT	1 cut(s)	52
Psp1406I	AACGTT	1 cut(s)	696
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	178, 535
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	561, 633
SatI	GCNGC	3 cut(s)	189, 368, 743
Sau3AI	GATC	2 cut(s)	376, 516
ScrFI	CCNGG	1 cut(s)	279
SfaNI	GCATC	2 cut(s)	106, 411
SmiMI	CAYNNNNRTG	1 cut(s)	57
Sse9I	AATT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	188
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	34, 166
TaaI	ACNGT	1 cut(s)	107
TaiI	ACGT	4 cut(s)	50, 528, 699, 751
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	285
TauI	GCSGC	1 cut(s)	191
Tru1I	TTAA	2 cut(s)	561, 633
Tru9I	TTAA	2 cut(s)	561, 633
TseFI	GTSAC	3 cut(s)	10, 48, 292
TseI	GCWGC	2 cut(s)	367, 742
Tsp45I	GTSAC	3 cut(s)	10, 48, 292
TspGWI	ACGGA	3 cut(s)	165, 504, 651
XceI	RCATGY	1 cut(s)	56
XspI	CTAG	1 cut(s)	509
ZraI	GACGTC	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.