Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Reverse (-)

26481630 .. 26482948

Gene Structure 1319 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1173400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTATGAAAGCAGTGAAGATCCTGCATTTTCTCTTCTTCATATGCCACTTAAGTCTTCAAGTCACGCATGCCTCCGATGGCGGATGGTATACTGGTCATGCAACATTTTATGGTGGTAGTGATGCTGCTGGCACAATGGGAGGTGCGTGTGGTTATGGAAACTTGTACAGCCAGGGGTACGGGACAAGCACCGCAGCTCTAAGCACTGCTCTTTTCAACAGTGGTTTGAGTTGTGGAGCGTGTTACCAACTCAGATGCAACCATGAGAGTGACCCCAAATGGTGCCTCCCGGGTGGTGTCATCACGGTCACAGCCACCAACTTCTGTCCTCCTAATAATGCTTTGTCTAACGACAACGGTGGCTGGTGCAACCCTCCTCTTCAACACTTTGATTTGGCTGAGCCTGCTTTCTTGCACATCGCTGAATATCGTGGTGGAATTGTCCCGGTACTCTTTAGAAGGGTTCCATGTCTGAAGAAAGGAGGCATAAGGTTCACCATCAATGGCCACTCGTACTTCAACTTGGTTTTGATCACAAATGTTGGGGGTGCAGGGGACGTCCGTACAGTGTCTATCAAGGGTTCTAGGACAGGGTGGCTACCCATGTCAAGAAACTGGGGCCAGAATTGGCAGAGCAACTCCTACCTCAATGGCCAGAGGCTCTCCTTCAAGGTCACCACTAGCGACGGACGCACCGTCACCAGCTACAATGTTGTGCCGGCTGGTTGGCAGTTTGGACAGACTTTTGAAGGTGGCCAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

256

Amino Acids

27.51

Weight (kDa)

8.87

Isoelectric Point (pI)

33.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	36 - 136	3.9e-08	EXPB1-like domain 1
DPBB_1	PF03330	65 - 152	3.5e-21	Lytic transglycolase
Expansin_C	PF01357	164 - 241	1.2e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	564
AccB1I	GGYRCC	1 cut(s)	285
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	2 cut(s)	84, 195
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	3 cut(s)	508, 655, 757
AcuI	CTGAAG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	5 cut(s)	170, 182, 453, 518, 568
AflII	CTTAAG	1 cut(s)	52
AgsI	TTSAA	6 cut(s)	62, 220, 386, 523, 673, 752
AhdI	GACNNNNNGTC	1 cut(s)	698
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	2 cut(s)	200, 708
AluI	AGCT	2 cut(s)	200, 708
AlwI	GGATC	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	4 cut(s)	508, 622, 655, 757
ApeKI	GCWGC	2 cut(s)	128, 197
AspS9I	GGNCC	1 cut(s)	622
AsuC2I	CCSGG	3 cut(s)	293, 294, 449
AsuHPI	GGTGA	3 cut(s)	490, 670, 694
AvaI	CYCGRG	1 cut(s)	292
BalI	TGGCCA	3 cut(s)	510, 657, 759
BanI	GGYRCC	1 cut(s)	285
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	115, 209
BccI	CCATC	3 cut(s)	74, 81, 509
BciT130I	CCWGG	1 cut(s)	176
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	3 cut(s)	293, 294, 449
BfaI	CTAG	2 cut(s)	588, 684
BfrI	CTTAAG	1 cut(s)	52
BisI	GCNGC	2 cut(s)	129, 198
BlpI	GCTNAGC	1 cut(s)	402
BlsI	GCNGC	2 cut(s)	130, 199
Bme1390I	CCNGG	4 cut(s)	176, 293, 294, 449
BmeRI	GACNNNNNGTC	1 cut(s)	698
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	622
BmiI	GGNNCC	3 cut(s)	287, 468, 623
BmrFI	CCNGG	4 cut(s)	176, 293, 294, 449
BmrI	ACTGGG	1 cut(s)	628
BmsI	GCATC	2 cut(s)	115, 248
BmuI	ACTGGG	1 cut(s)	628
BpiI	GAAGAC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	402
BpuMI	CCSGG	3 cut(s)	293, 294, 449
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	175, 292
Bse118I	RCCGGY	1 cut(s)	721
Bse1I	ACTGG	3 cut(s)	100, 623, 760
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	175, 292
BseGI	GGATG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	268, 393
BseNI	ACTGG	3 cut(s)	100, 623, 760
BseRI	GAGGAG	1 cut(s)	369
BseXI	GCAGC	2 cut(s)	115, 209
BsgI	GTGCAG	1 cut(s)	573
BshFI	GGCC	4 cut(s)	510, 624, 657, 759
BshNI	GGYRCC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	293, 449, 722
BslFI	GGGAC	3 cut(s)	199, 431, 572
BsmFI	GGGAC	3 cut(s)	199, 431, 572
BsnI	GGCC	4 cut(s)	510, 624, 657, 759
BsoBI	CYCGRG	1 cut(s)	292
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	2 cut(s)	21, 534
Bsp1720I	GCTNAGC	1 cut(s)	402
BspACI	CCGC	2 cut(s)	84, 195
BspANI	GGCC	4 cut(s)	510, 624, 657, 759
BspCNI	CTCAG	2 cut(s)	267, 394
BspLI	GGNNCC	3 cut(s)	287, 468, 623
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	1 cut(s)	285
BspTI	CTTAAG	1 cut(s)	52
BsrFI	RCCGGY	1 cut(s)	721
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	3 cut(s)	100, 623, 760
BssAI	RCCGGY	1 cut(s)	721
BssECI	CCNNGG	2 cut(s)	175, 292
BssMI	GATC	2 cut(s)	21, 534
BssNAI	GTATAC	1 cut(s)	93
BssNI	GRCGYC	1 cut(s)	561
Bst1107I	GTATAC	1 cut(s)	93
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	5 cut(s)	224, 310, 362, 571, 700
Bst6I	CTCTTC	2 cut(s)	41, 387
BstACI	GRCGYC	1 cut(s)	561
BstAFI	CTTAAG	1 cut(s)	52
BstAUI	TGTACA	1 cut(s)	168
BstC8I	GCNNGC	4 cut(s)	72, 133, 408, 723
BstDEI	CTNAG	3 cut(s)	203, 254, 402
BstEII	GGTNACC	1 cut(s)	676
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	2 cut(s)	24, 537
BstMBI	GATC	2 cut(s)	21, 534
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 407, 693
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	74
BstPI	GGTNACC	1 cut(s)	676
BstSCI	CCNGG	4 cut(s)	174, 291, 292, 447
BstV1I	GCAGC	2 cut(s)	115, 209
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BstZ17I	GTATAC	1 cut(s)	93
BsuRI	GGCC	4 cut(s)	510, 624, 657, 759
BtgZI	GCGATG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	2 cut(s)	21, 207
BtsIMutI	CAGTG	4 cut(s)	21, 207, 229, 576
Cac8I	GCNNGC	4 cut(s)	72, 133, 408, 723
Cfr10I	RCCGGY	1 cut(s)	721
Cfr13I	GGNCC	1 cut(s)	622
Cfr9I	CCCGGG	1 cut(s)	292
CseI	GACGC	1 cut(s)	702
Csp6I	GTAC	5 cut(s)	169, 181, 452, 517, 567
CviAII	CATG	5 cut(s)	71, 101, 266, 471, 607
CviQI	GTAC	5 cut(s)	169, 181, 452, 517, 567
DdeI	CTNAG	3 cut(s)	203, 254, 402
DpnI	GATC	2 cut(s)	23, 536
DpnII	GATC	2 cut(s)	21, 534
DriI	GACNNNNNGTC	1 cut(s)	698
EaeI	YGGCCR	3 cut(s)	508, 655, 757
Eam1104I	CTCTTC	2 cut(s)	41, 387
Eam1105I	GACNNNNNGTC	1 cut(s)	698
EarI	CTCTTC	2 cut(s)	41, 387
EciI	GGCGGA	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	292
Eco91I	GGTNACC	1 cut(s)	676
EcoO65I	GGTNACC	1 cut(s)	676
EcoRII	CCWGG	1 cut(s)	174
FaeI	CATG	5 cut(s)	74, 104, 269, 474, 610
FaqI	GGGAC	3 cut(s)	199, 431, 572
FatI	CATG	5 cut(s)	70, 100, 265, 470, 606
FauNDI	CATATG	1 cut(s)	44
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	2 cut(s)	129, 198
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	2 cut(s)	129, 198
FspBI	CTAG	2 cut(s)	588, 684
GluI	GCNGC	2 cut(s)	129, 198
HaeIII	GGCC	4 cut(s)	510, 624, 657, 759
HapII	CCGG	3 cut(s)	293, 449, 722
HgaI	GACGC	1 cut(s)	702
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	5 cut(s)	74, 104, 269, 474, 610
HpaII	CCGG	3 cut(s)	293, 449, 722
HphI	GGTGA	3 cut(s)	490, 670, 694
Hpy166II	GTNNAC	2 cut(s)	93, 498
Hpy188I	TCNGA	3 cut(s)	79, 257, 477
Hpy188III	TCNNGA	1 cut(s)	612
Hpy8I	GTNNAC	2 cut(s)	93, 498
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	3 cut(s)	456, 679, 746
HpyCH4III	ACNGT	5 cut(s)	224, 310, 362, 571, 700
HpyCH4IV	ACGT	1 cut(s)	561
HpyCH4V	TGCA	6 cut(s)	28, 104, 261, 372, 418, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 407, 693
HpyF3I	CTNAG	3 cut(s)	203, 254, 402
HpySE526I	ACGT	1 cut(s)	561
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	5 cut(s)	74, 104, 269, 474, 610
KroI	GCCGGC	1 cut(s)	721
KroNI	GCCGGC	1 cut(s)	723
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	21, 534
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	2 cut(s)	115, 209
LweI	GCATC	2 cut(s)	115, 248
MaeI	CTAG	2 cut(s)	588, 684
MaeII	ACGT	1 cut(s)	561
MaeIII	GTNAC	6 cut(s)	64, 245, 272, 310, 676, 700
MalI	GATC	2 cut(s)	23, 536
MboI	GATC	2 cut(s)	21, 534
MboII	GAAGA	6 cut(s)	28, 31, 31, 50, 374, 490
MflI	RGATCY	1 cut(s)	21
MlsI	TGGCCA	3 cut(s)	510, 657, 759
MluCI	AATT	2 cut(s)	441, 628
MluNI	TGGCCA	3 cut(s)	510, 657, 759
MnlI	CCTC	9 cut(s)	85, 137, 299, 342, 387, 390, 479, 654, 659
Mox20I	TGGCCA	3 cut(s)	510, 657, 759
MroNI	GCCGGC	1 cut(s)	721
MscI	TGGCCA	3 cut(s)	510, 657, 759
MseI	TTAA	1 cut(s)	53
MslI	CAYNNNNRTG	1 cut(s)	270
Msp20I	TGGCCA	3 cut(s)	510, 657, 759
MspCI	CTTAAG	1 cut(s)	52
MspI	CCGG	3 cut(s)	293, 449, 722
MspR9I	CCNGG	4 cut(s)	176, 293, 294, 449
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	3 cut(s)	11, 407, 693
NaeI	GCCGGC	1 cut(s)	723
NciI	CCSGG	3 cut(s)	293, 294, 449
NdeI	CATATG	1 cut(s)	44
NdeII	GATC	2 cut(s)	21, 534
NgoMIV	GCCGGC	1 cut(s)	721
NlaIII	CATG	5 cut(s)	74, 104, 269, 474, 610
NlaIV	GGNNCC	3 cut(s)	287, 468, 623
NmuCI	GTSAC	5 cut(s)	64, 272, 310, 676, 700
NspI	RCATGY	1 cut(s)	74
PaeI	GCATGC	1 cut(s)	74
PcsI	WCGNNNNNNNCGW	1 cut(s)	696
PdiI	GCCGGC	1 cut(s)	723
PkrI	GCNGC	2 cut(s)	130, 199
Psp6I	CCWGG	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	287, 468, 623
PspPI	GGNCC	1 cut(s)	622
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	5 cut(s)	170, 182, 453, 518, 568
RsaNI	GTAC	5 cut(s)	169, 181, 452, 517, 567
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	53
SatI	GCNGC	2 cut(s)	129, 198
Sau3AI	GATC	2 cut(s)	21, 534
Sau96I	GGNCC	1 cut(s)	622
ScrFI	CCNGG	4 cut(s)	176, 293, 294, 449
SetI	ASST	8 cut(s)	148, 202, 497, 564, 651, 678, 710, 757
SfaNI	GCATC	2 cut(s)	115, 248
SmaI	CCCGGG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
SphI	GCATGC	1 cut(s)	74
Sse9I	AATT	2 cut(s)	441, 628
SsiI	CCGC	2 cut(s)	84, 195
SspMI	CTAG	2 cut(s)	588, 684
StyD4I	CCNGG	4 cut(s)	174, 291, 292, 447
TaaI	ACNGT	5 cut(s)	224, 310, 362, 571, 700
TaiI	ACGT	1 cut(s)	564
TasI	AATT	2 cut(s)	441, 628
TatI	WGTACW	1 cut(s)	168
Tru1I	TTAA	1 cut(s)	53
Tru9I	TTAA	1 cut(s)	53
TscAI	CASTG	4 cut(s)	21, 214, 229, 576
TseFI	GTSAC	5 cut(s)	64, 272, 310, 676, 700
TseI	GCWGC	2 cut(s)	128, 197
Tsp45I	GTSAC	5 cut(s)	64, 272, 310, 676, 700
TspDTI	ATGAA	2 cut(s)	23, 31
TspGWI	ACGGA	2 cut(s)	554, 705
TspMI	CCCGGG	1 cut(s)	292
TspRI	CASTG	4 cut(s)	21, 214, 229, 576
Vha464I	CTTAAG	1 cut(s)	52
XceI	RCATGY	1 cut(s)	74
XmaI	CCCGGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	2 cut(s)	588, 684
ZraI	GACGTC	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.