Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Forward (+)

8080793 .. 8081980

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G008740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTAAGAAAGCAATGCAGATCCTGCAATTGCTCTTCTTTATGCTGATCCCCTTGACTGGTTGTCAGGGAAGTCGTGGAGAATACGGAGAATGGCAAACTGCACATGCAACATTCTATGGGGGAAGTGATGCTACTGGCACAATGGGAGGTGCATGTGGTTATGGAAACTTGTACAGCCAAGGGTACGGGACTCGCACCGCAGCTCTAAGCACTGCTCTCTTCAACAGTGGTTTGAGCTGCGGAGCATGTTACCAATTGCGATGCAACGACGACCCCAAATGGTGCCTCCATGGTGACATCATTGTCACTGCCACCAACCTCTGCCCACCTAATCAAGCTTTGTCCAACGACAATGGTGGGTGGTGCAATCCTCCTCTTGAACATTTCGATTTGGCTCAGCCTGCTTTCTTGCAGATTGCTGAGTATCGTGCTGGGATTGTCCCTGTACTATTCCGAAGGGTTCCATGTGAGAAGAAAGGAGGCATAAGGTTCACCATCAATGGTCACTCATACTTCAACTTGGTGTTGATAACAAACGTTGGGGGTGCAGGGGATGTTAAAACAGTGTCCATCAAGGGATCTAGGACAGGGTGGCTACCAATGTCAAGAAACTGGGGGCAGAATTGGCAGAGCAATTCCTACCTCAATGGCCAAACCCTCTCCTTCAAAATCACAACCAGTGATGGAGCCACACTCACCCACAATAATGTCGTTCCTGCTGGTTGGCAATTTGGACAGACCTTTGAAGGTGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

254

Amino Acids

27.49

Weight (kDa)

8.36

Isoelectric Point (pI)

26.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	36 - 158	7.2e-08	EXPB1-like domain 1
DPBB_1	PF03330	67 - 151	3.2e-20	Lytic transglycolase
Expansin_C	PF01357	163 - 240	1.3e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	285
AciI	CCGC	2 cut(s)	201, 243
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	3 cut(s)	16, 43, 589
AcoI	YGGCCR	1 cut(s)	652
AfaI	GTAC	3 cut(s)	176, 188, 450
AfiI	CCNNNNNNNGG	1 cut(s)	59
AgsI	TTSAA	5 cut(s)	226, 383, 520, 670, 749
AhdI	GACNNNNNGTC	1 cut(s)	63
AluBI	AGCT	3 cut(s)	206, 240, 341
AluI	AGCT	3 cut(s)	206, 240, 341
AlwI	GGATC	3 cut(s)	16, 43, 589
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	2 cut(s)	203, 240
AsuHPI	GGTGA	3 cut(s)	308, 487, 691
BalI	TGGCCA	1 cut(s)	654
BanI	GGYRCC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BbvI	GCAGC	2 cut(s)	215, 227
BccI	CCATC	3 cut(s)	506, 581, 680
BfaI	CTAG	2 cut(s)	585, 763
BisI	GCNGC	2 cut(s)	204, 241
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	2 cut(s)	205, 242
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmiI	GGNNCC	3 cut(s)	287, 465, 691
BmrI	ACTGGG	1 cut(s)	625
BmsI	GCATC	2 cut(s)	121, 254
BmuI	ACTGGG	1 cut(s)	625
BplI	GAGNNNNNCTC	2 cut(s)	681, 713
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaJI	CCNNGG	2 cut(s)	181, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	4 cut(s)	64, 142, 620, 681
Bse3DI	GCAATG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	181, 292
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	2 cut(s)	413, 414
BseNI	ACTGG	4 cut(s)	64, 142, 620, 681
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	215, 227
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	2 cut(s)	87, 570
BshFI	GGCC	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	285
BslFI	GGGAC	2 cut(s)	205, 428
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	2 cut(s)	205, 428
BsnI	GGCC	1 cut(s)	654
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	21, 48, 581
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	2 cut(s)	201, 243
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	2 cut(s)	412, 415
BspLI	GGNNCC	3 cut(s)	287, 465, 691
BspPI	GGATC	3 cut(s)	16, 43, 589
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	4 cut(s)	64, 142, 620, 681
BssECI	CCNNGG	2 cut(s)	181, 292
BssMI	GATC	3 cut(s)	21, 48, 581
BssT1I	CCWWGG	2 cut(s)	181, 292
Bst4CI	ACNGT	2 cut(s)	230, 568
Bst6I	CTCTTC	2 cut(s)	41, 227
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	4 cut(s)	6, 209, 399, 423
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	562
BstKTI	GATC	3 cut(s)	24, 51, 584
BstMBI	GATC	3 cut(s)	21, 48, 581
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 25, 404, 628
BstNSI	RCATGY	3 cut(s)	110, 159, 252
BstV1I	GCAGC	2 cut(s)	215, 227
BstX2I	RGATCY	2 cut(s)	21, 581
BstYI	RGATCY	2 cut(s)	21, 581
BsuRI	GGCC	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	2 cut(s)	213, 309
BtsIMutI	CAGTG	5 cut(s)	213, 235, 309, 573, 688
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	175, 187, 449
CviAII	CATG	5 cut(s)	107, 156, 249, 293, 468
CviQI	GTAC	3 cut(s)	175, 187, 449
DdeI	CTNAG	4 cut(s)	6, 209, 399, 423
DpnI	GATC	3 cut(s)	23, 50, 583
DpnII	GATC	3 cut(s)	21, 48, 581
DrdI	GACNNNNNNGTC	1 cut(s)	305
DriI	GACNNNNNGTC	1 cut(s)	63
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	2 cut(s)	41, 227
Eam1105I	GACNNNNNGTC	1 cut(s)	63
EarI	CTCTTC	2 cut(s)	41, 227
Eco130I	CCWWGG	2 cut(s)	181, 292
EcoT14I	CCWWGG	2 cut(s)	181, 292
ErhI	CCWWGG	2 cut(s)	181, 292
FaeI	CATG	5 cut(s)	110, 159, 252, 296, 471
FaqI	GGGAC	2 cut(s)	205, 428
FatI	CATG	5 cut(s)	106, 155, 248, 292, 467
Fnu4HI	GCNGC	2 cut(s)	204, 241
FokI	GGATG	1 cut(s)	569
Fsp4HI	GCNGC	2 cut(s)	204, 241
FspBI	CTAG	2 cut(s)	585, 763
GluI	GCNGC	2 cut(s)	204, 241
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	654
Hin1II	CATG	5 cut(s)	110, 159, 252, 296, 471
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	3 cut(s)	308, 487, 691
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	2 cut(s)	380, 609
Hpy8I	GTNNAC	1 cut(s)	495
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	453, 676, 743
HpyCH4III	ACNGT	2 cut(s)	230, 568
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	9 cut(s)	19, 28, 104, 110, 155, 267, 369, 415, 551
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 25, 404, 628
HpyF3I	CTNAG	4 cut(s)	6, 209, 399, 423
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	5 cut(s)	110, 159, 252, 296, 471
Kzo9I	GATC	3 cut(s)	21, 48, 581
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	245, 689
Lsp1109I	GCAGC	2 cut(s)	215, 227
LweI	GCATC	2 cut(s)	121, 254
MaeI	CTAG	2 cut(s)	585, 763
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	4 cut(s)	251, 296, 307, 506
MalI	GATC	3 cut(s)	23, 50, 583
MboI	GATC	3 cut(s)	21, 48, 581
MboII	GAAGA	3 cut(s)	28, 214, 487
MfeI	CAATTG	2 cut(s)	29, 257
MflI	RGATCY	2 cut(s)	21, 581
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	6 cut(s)	29, 257, 625, 637, 731, 758
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	8 cut(s)	143, 299, 332, 384, 387, 476, 656, 671
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	1 cut(s)	561
MslI	CAYNNNNRTG	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	654
MunI	CAATTG	2 cut(s)	29, 257
MwoI	GCNNNNNNNGC	4 cut(s)	11, 25, 404, 628
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	21, 48, 581
NlaIII	CATG	5 cut(s)	110, 159, 252, 296, 471
NlaIV	GGNNCC	3 cut(s)	287, 465, 691
NmuCI	GTSAC	3 cut(s)	296, 307, 506
NspI	RCATGY	3 cut(s)	110, 159, 252
PciSI	GCTCTTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	205, 242
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	540
PspFI	CCCAGC	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	287, 465, 691
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	21, 581
RsaI	GTAC	3 cut(s)	176, 188, 450
RsaNI	GTAC	3 cut(s)	175, 187, 449
RseI	CAYNNNNRTG	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	2 cut(s)	204, 241
Sau3AI	GATC	3 cut(s)	21, 48, 581
SchI	GAGTC	1 cut(s)	187
SfaNI	GCATC	2 cut(s)	121, 254
SmiMI	CAYNNNNRTG	1 cut(s)	708
Sse9I	AATT	6 cut(s)	29, 257, 625, 637, 731, 758
SsiI	CCGC	2 cut(s)	201, 243
SspMI	CTAG	2 cut(s)	585, 763
StyI	CCWWGG	2 cut(s)	181, 292
TaaI	ACNGT	2 cut(s)	230, 568
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	1 cut(s)	390
TasI	AATT	6 cut(s)	29, 257, 625, 637, 731, 758
TatI	WGTACW	2 cut(s)	174, 448
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	5 cut(s)	220, 235, 316, 573, 688
TseFI	GTSAC	3 cut(s)	296, 307, 506
TseI	GCWGC	2 cut(s)	203, 240
Tsp45I	GTSAC	3 cut(s)	296, 307, 506
TspGWI	ACGGA	1 cut(s)	102
TspRI	CASTG	5 cut(s)	220, 235, 316, 573, 688
XceI	RCATGY	3 cut(s)	110, 159, 252
XspI	CTAG	2 cut(s)	585, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.