Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Reverse (-)

916806 .. 918671

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G03090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTCATGGGTAAGATGGGTCTTTTGGGAATTGCTCTGTTTTGTTTTGCTGCAATGGTGTGCTCTGTTCATGGCTATGACGCTGGATGGGTCAATGCTCATGCTACCTTCTATGGTGGAAGTGATGCTTCAGGAACAATGGGTGGAGCTTGTGGCTACGGGAACCTCTACAGTCAAGGTTACGGGACCAACACGGCGGCGTTGAGCACTGCTCTGTTCAACAACGGTCTTAGCTGCGGGGCTTGTTTTGAGATCAAGTGTCAGAGCGACGGCGCGTGGTGTTTACCTGGTGCTATCATTGTCACAGCCACCAATTTCTGTCCTCCTAACAACGCTCTTCCCAATAACGCTGGTGGTTGGTGTAACCCTCCGCTTCATCATTTCGATCTCTCTCAGCCTGTTTTTCAACGCATTGCTCAGTACAAAGCTGGTGTTGTCCCTGTTTCCTACAGAAGGGTTCCGTGTATGAGAAGAGGAGGTATAAGATTCACAATCAACGGTCACTCTTACTTCAACCTTGTCTTGGTGACCAATGTTGGTGGTGCTGGAGATGTTCATTCGGTTGCGGTTAAAGGTTCTAGAACAAGGTGGCAACAAATGTCAAGAAACTGGGGACAGAACTGGCAAAGCAACAATCTCTTAAACGGTCAAGCATTGTCATTTAAGGTGACTGCTAGTGATGGTCGTACCGTCGTCTCTAACAACATTGCTCCAGCTAGTTGGTCCTTTGGACAAACCTTCACCGGCCGTCAATTCCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0007275 GO:0008150 GO:0009653 GO:0009664 GO:0009791 GO:0009827 GO:0009828 GO:0009987 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0016020 GO:0016043 GO:0022622 GO:0030312 GO:0032501 GO:0032502 GO:0042545 GO:0044464 GO:0045229 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

253

Amino Acids

27.08

Weight (kDa)

9.32

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	35 - 156	1.6e-07	EXPB1-like domain 1
DPBB_1	PF03330	65 - 150	5.8e-22	Lytic transglycolase
Expansin_C	PF01357	161 - 238	1.4e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	275
AciI	CCGC	4 cut(s)	197, 237, 371, 566
AcoI	YGGCCR	1 cut(s)	745
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	2 cut(s)	422, 688
AfiI	CCNNNNNNNGG	2 cut(s)	453, 523
AgsI	TTSAA	3 cut(s)	220, 407, 514
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	4 cut(s)	149, 234, 428, 716
AluI	AGCT	4 cut(s)	149, 234, 428, 716
Alw21I	GWGCWC	2 cut(s)	65, 209
Alw26I	GTCTC	1 cut(s)	700
AoxI	GGCC	1 cut(s)	745
ApeKI	GCWGC	2 cut(s)	50, 234
AspLEI	GCGC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	186, 723
AsuHPI	GGTGA	3 cut(s)	538, 679, 733
AvaII	GGWCC	2 cut(s)	186, 723
Bbv12I	GWGCWC	2 cut(s)	65, 209
BbvI	GCAGC	2 cut(s)	37, 221
BccI	CCATC	3 cut(s)	10, 81, 674
BceAI	ACGGC	3 cut(s)	210, 286, 732
BciT130I	CCWGG	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	700
BfaI	CTAG	3 cut(s)	579, 675, 717
BfmI	CTRYAG	2 cut(s)	169, 448
BisI	GCNGC	3 cut(s)	51, 198, 235
BlsI	GCNGC	3 cut(s)	52, 199, 236
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	2 cut(s)	186, 723
BmgT120I	GGNCC	2 cut(s)	186, 723
BmiI	GGNNCC	3 cut(s)	164, 187, 459
BmrFI	CCNGG	1 cut(s)	288
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	619
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpmI	CTGGAG	2 cut(s)	567, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 523
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	2 cut(s)	614, 626
Bse3DI	GCAATG	3 cut(s)	60, 411, 705
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	453, 523
BseMI	GCAATG	3 cut(s)	60, 411, 705
BseMII	CTCAG	2 cut(s)	407, 431
BseNI	ACTGG	2 cut(s)	614, 626
BseRI	GAGGAG	1 cut(s)	489
BseX3I	CGGCCG	1 cut(s)	745
BseXI	GCAGC	2 cut(s)	37, 221
Bsh1236I	CGCG	1 cut(s)	275
Bsh1285I	CGRYCG	1 cut(s)	748
BshFI	GGCC	1 cut(s)	747
BsiEI	CGRYCG	1 cut(s)	748
BsiHKAI	GWGCWC	2 cut(s)	65, 209
BsiSI	CCGG	1 cut(s)	744
BslFI	GGGAC	3 cut(s)	199, 422, 627
BslI	CCNNNNNNNGG	2 cut(s)	453, 523
BsmAI	GTCTC	1 cut(s)	700
BsmBI	CGTCTC	1 cut(s)	700
BsmFI	GGGAC	3 cut(s)	199, 422, 627
BsnI	GGCC	1 cut(s)	747
Bsp1286I	GDGCHC	2 cut(s)	65, 209
Bsp143I	GATC	2 cut(s)	252, 385
BspACI	CCGC	4 cut(s)	197, 237, 371, 566
BspANI	GGCC	1 cut(s)	747
BspCNI	CTCAG	2 cut(s)	406, 430
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	3 cut(s)	164, 187, 459
BspQI	GCTCTTC	1 cut(s)	342
BsrDI	GCAATG	3 cut(s)	60, 411, 705
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	2 cut(s)	614, 626
BssAI	RCCGGY	1 cut(s)	743
BssMI	GATC	2 cut(s)	252, 385
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	5 cut(s)	173, 227, 500, 647, 691
Bst6I	CTCTTC	2 cut(s)	342, 466
BstDEI	CTNAG	3 cut(s)	230, 393, 417
BstEII	GGTNACC	1 cut(s)	526
BstENI	CCTNNNNNAGG	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	275
BstKTI	GATC	2 cut(s)	255, 388
BstMAI	GTCTC	1 cut(s)	700
BstMBI	GATC	2 cut(s)	252, 385
BstMCI	CGRYCG	1 cut(s)	748
BstNI	CCWGG	1 cut(s)	288
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	2 cut(s)	169, 448
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	2 cut(s)	37, 221
BstXI	CCANNNNNNTGG	1 cut(s)	720
BstZI	CGGCCG	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	747
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
CfoI	GCGC	1 cut(s)	275
Cfr10I	RCCGGY	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	186, 723
CseI	GACGC	1 cut(s)	89
CsiI	ACCWGGT	1 cut(s)	286
Csp6I	GTAC	2 cut(s)	421, 687
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	3 cut(s)	7, 71, 101
CviQI	GTAC	2 cut(s)	421, 687
DdeI	CTNAG	3 cut(s)	230, 393, 417
DpnI	GATC	2 cut(s)	254, 387
DpnII	GATC	2 cut(s)	252, 385
EaeI	YGGCCR	1 cut(s)	745
EagI	CGGCCG	1 cut(s)	745
Eam1104I	CTCTTC	2 cut(s)	342, 466
EarI	CTCTTC	2 cut(s)	342, 466
EclXI	CGGCCG	1 cut(s)	745
Eco47I	GGWCC	2 cut(s)	186, 723
Eco52I	CGGCCG	1 cut(s)	745
Eco57I	CTGAAG	1 cut(s)	114
Eco91I	GGTNACC	1 cut(s)	526
EcoNI	CCTNNNNNAGG	1 cut(s)	451
EcoO65I	GGTNACC	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	286
Esp3I	CGTCTC	1 cut(s)	700
FaeI	CATG	3 cut(s)	10, 74, 104
FaiI	YATR	7 cut(s)	8, 72, 78, 102, 114, 467, 482
FalI	AAGNNNNNCTT	2 cut(s)	112, 144
FaqI	GGGAC	3 cut(s)	199, 422, 627
FatI	CATG	3 cut(s)	6, 70, 100
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	3 cut(s)	51, 198, 235
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	3 cut(s)	51, 198, 235
FspBI	CTAG	3 cut(s)	579, 675, 717
GlaI	GCGC	1 cut(s)	274
GluI	GCNGC	3 cut(s)	51, 198, 235
GsuI	CTGGAG	2 cut(s)	567, 696
HaeIII	GGCC	1 cut(s)	747
HapII	CCGG	1 cut(s)	744
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	10, 74, 104
Hin6I	GCGC	1 cut(s)	273
HinP1I	GCGC	1 cut(s)	273
HinfI	GANTC	1 cut(s)	486
HpaII	CCGG	1 cut(s)	744
HphI	GGTGA	3 cut(s)	538, 679, 733
Hpy166II	GTNNAC	1 cut(s)	284
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	3 cut(s)	132, 579, 603
Hpy8I	GTNNAC	1 cut(s)	284
Hpy99I	CGWCG	2 cut(s)	272, 695
HpyAV	CCTTC	3 cut(s)	118, 447, 748
HpyCH4III	ACNGT	5 cut(s)	173, 227, 500, 647, 691
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	230, 393, 417
Hsp92II	CATG	3 cut(s)	10, 74, 104
HspAI	GCGC	1 cut(s)	273
Kzo9I	GATC	2 cut(s)	252, 385
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	146, 715
Lsp1109I	GCAGC	2 cut(s)	37, 221
LweI	GCATC	1 cut(s)	115
MabI	ACCWGGT	1 cut(s)	286
MaeI	CTAG	3 cut(s)	579, 675, 717
MaeIII	GTNAC	6 cut(s)	179, 301, 362, 500, 526, 667
MalI	GATC	2 cut(s)	254, 387
MboI	GATC	2 cut(s)	252, 385
MboII	GAAGA	2 cut(s)	329, 483
MhlI	GDGCHC	2 cut(s)	65, 209
MluCI	AATT	3 cut(s)	30, 313, 752
MnlI	CCTC	5 cut(s)	176, 333, 378, 467, 470
MseI	TTAA	4 cut(s)	570, 641, 663, 760
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	1 cut(s)	744
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	275
NdeII	GATC	2 cut(s)	252, 385
NlaIII	CATG	3 cut(s)	10, 74, 104
NlaIV	GGNNCC	3 cut(s)	164, 187, 459
NmuCI	GTSAC	4 cut(s)	301, 500, 526, 667
PciSI	GCTCTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	486
PkrI	GCNGC	3 cut(s)	52, 199, 236
Psp6I	CCWGG	1 cut(s)	286
PspEI	GGTNACC	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	3 cut(s)	164, 187, 459
PspPI	GGNCC	2 cut(s)	186, 723
RsaI	GTAC	2 cut(s)	422, 688
RsaNI	GTAC	2 cut(s)	421, 687
RseI	CAYNNNNRTG	1 cut(s)	75
SapI	GCTCTTC	1 cut(s)	342
SaqAI	TTAA	4 cut(s)	570, 641, 663, 760
SatI	GCNGC	3 cut(s)	51, 198, 235
Sau3AI	GATC	2 cut(s)	252, 385
Sau96I	GGNCC	2 cut(s)	186, 723
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	2 cut(s)	65, 209
SexAI	ACCWGGT	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	2 cut(s)	169, 448
SinI	GGWCC	2 cut(s)	186, 723
SmiMI	CAYNNNNRTG	1 cut(s)	75
Sse9I	AATT	3 cut(s)	30, 313, 752
SsiI	CCGC	4 cut(s)	197, 237, 371, 566
SspMI	CTAG	3 cut(s)	579, 675, 717
StyD4I	CCNGG	1 cut(s)	286
TaaI	ACNGT	5 cut(s)	173, 227, 500, 647, 691
TaqI	TCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	30, 313, 752
TatI	WGTACW	1 cut(s)	420
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	4 cut(s)	570, 641, 663, 760
Tru9I	TTAA	4 cut(s)	570, 641, 663, 760
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	4 cut(s)	301, 500, 526, 667
TseI	GCWGC	2 cut(s)	50, 234
Tsp45I	GTSAC	4 cut(s)	301, 500, 526, 667
TspDTI	ATGAA	3 cut(s)	59, 365, 545
TspGWI	ACGGA	2 cut(s)	450, 746
TspRI	CASTG	1 cut(s)	214
VpaK11BI	GGWCC	2 cut(s)	186, 723
XagI	CCTNNNNNAGG	1 cut(s)	451
XbaI	TCTAGA	1 cut(s)	578
XspI	CTAG	3 cut(s)	579, 675, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.