Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Forward (+)

5942510 .. 5943884

Gene Structure 1375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g10010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCTAAGAAAGCAATGCAGATCCTGGAATTGCTCTTCTTTATGCTGATCCCCTTGGCTAGTTCTCAGGGAAGTGGTCGAGGATACGACGATTGGCAAACTGCACACGCAACATTCTATGGTGGAAGTGATGCTACTGGCACTATGGGAGGTGCATGTGGTTATGGAAACTTGTACAGCCAAGGATATGGGACTCGCACCGCAGCTCTAAGCACTGCTCTCTTCAACAGTGGTTTGAGCTGCGGTTCATGTTACCAATTGCGTTGCAACGACGATCCTAAATGGTGCCTCCATGGTGACATCACTGTCACTGCTACCAACCTCTGCCCACCTAATCTAGCTTTGTCCAACGACAATGGTGGGTGGTGCAATCCTCCTCTCGAACACTTCGATTTGGCTGAGCCTGCTTTCTTGCAGATTGCTGAGTATCGTGCTGGGATTGTCCCTGTACTCTTCCGAAGGGTTCCTTGTGTGAAGAAAGGAGGCATAAGGTTCACCATCAATGGTCACTCATACTTCAACTTGGTGTTAATAACAAACGTTGGAGGTGCAGGGGATGTTCAAAGTGTGTCCATCAAGGGGTCTAGGGCAGGGTGGCAACCAATGTCAAGGAATTGGGGACAGAATTGGCAGAGCAATTCCTACCTCAATGGCCAAACCCTCTCCTTCAAAATCACAACCAGCGATGGAGCTACACTCATCCACAATAATGTCGTTCCTGCTGGTTGGCAATTTGGACAGACCTTTGAAGGTGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

255

Amino Acids

27.39

Weight (kDa)

7.57

Isoelectric Point (pI)

31.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	36 - 135	1.4e-06	EXPB1-like domain 1
DPBB_1	PF03330	67 - 151	7.6e-20	Lytic transglycolase
Expansin_C	PF01357	163 - 240	7.6e-33	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	285
AciI	CCGC	2 cut(s)	201, 243
AclI	AACGTT	1 cut(s)	540
AclWI	GGATC	3 cut(s)	16, 43, 269
AcoI	YGGCCR	1 cut(s)	652
AfaI	GTAC	2 cut(s)	176, 450
AfiI	CCNNNNNNNGG	1 cut(s)	579
AgsI	TTSAA	5 cut(s)	226, 520, 563, 670, 749
AjnI	CCWGG	1 cut(s)	24
AluBI	AGCT	4 cut(s)	206, 240, 341, 692
AluI	AGCT	4 cut(s)	206, 240, 341, 692
AlwI	GGATC	3 cut(s)	16, 43, 269
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	652
ApeKI	GCWGC	2 cut(s)	203, 240
AsuHPI	GGTGA	2 cut(s)	308, 487
BalI	TGGCCA	1 cut(s)	654
BanI	GGYRCC	1 cut(s)	285
BarI	GAAGNNNNNNTAC	2 cut(s)	118, 150
BbvI	GCAGC	2 cut(s)	215, 227
BccI	CCATC	3 cut(s)	506, 581, 680
BciT130I	CCWGG	1 cut(s)	26
BciVI	GTATCC	1 cut(s)	77
BfaI	CTAG	4 cut(s)	60, 338, 585, 763
BfuI	GTATCC	1 cut(s)	77
BisI	GCNGC	2 cut(s)	204, 241
BlpI	GCTNAGC	1 cut(s)	399
BlsI	GCNGC	2 cut(s)	205, 242
Bme1390I	CCNGG	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	287, 465
BmrFI	CCNGG	1 cut(s)	26
BmsI	GCATC	1 cut(s)	121
BplI	GAGNNNNNCTC	2 cut(s)	681, 713
Bpu1102I	GCTNAGC	1 cut(s)	399
BsaJI	CCNNGG	3 cut(s)	54, 181, 292
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
Bse1I	ACTGG	1 cut(s)	142
Bse3DI	GCAATG	1 cut(s)	21
BseBI	CCWGG	1 cut(s)	26
BseDI	CCNNGG	3 cut(s)	54, 181, 292
BseGI	GGATG	2 cut(s)	562, 699
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	3 cut(s)	80, 390, 414
BseNI	ACTGG	1 cut(s)	142
BseRI	GAGGAG	1 cut(s)	366
BseXI	GCAGC	2 cut(s)	215, 227
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	2 cut(s)	87, 570
BshFI	GGCC	1 cut(s)	654
BshNI	GGYRCC	1 cut(s)	285
BslFI	GGGAC	3 cut(s)	205, 428, 633
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmFI	GGGAC	3 cut(s)	205, 428, 633
BsnI	GGCC	1 cut(s)	654
Bsp1407I	TGTACA	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	21, 48, 274
Bsp1720I	GCTNAGC	1 cut(s)	399
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	2 cut(s)	201, 243
BspANI	GGCC	1 cut(s)	654
BspCNI	CTCAG	3 cut(s)	79, 391, 415
BspLI	GGNNCC	2 cut(s)	287, 465
BspPI	GGATC	3 cut(s)	16, 43, 269
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	174
BsrI	ACTGG	1 cut(s)	142
BssECI	CCNNGG	3 cut(s)	54, 181, 292
BssMI	GATC	3 cut(s)	21, 48, 274
BssT1I	CCWWGG	3 cut(s)	54, 181, 292
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	2 cut(s)	230, 307
Bst6I	CTCTTC	3 cut(s)	41, 227, 458
BstAUI	TGTACA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	5 cut(s)	6, 66, 209, 399, 423
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	562, 699
BstKTI	GATC	3 cut(s)	24, 51, 277
BstMBI	GATC	3 cut(s)	21, 48, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 404
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	24
BstV1I	GCAGC	2 cut(s)	215, 227
BstX2I	RGATCY	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	188
BstYI	RGATCY	1 cut(s)	21
BsuI	GTATCC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	699
BtsCI	GGATG	2 cut(s)	562, 699
BtsI	GCAGTG	2 cut(s)	213, 309
BtsIMutI	CAGTG	4 cut(s)	213, 235, 303, 309
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	175, 449
CviAII	CATG	3 cut(s)	156, 249, 293
CviQI	GTAC	2 cut(s)	175, 449
DdeI	CTNAG	5 cut(s)	6, 66, 209, 399, 423
DpnI	GATC	3 cut(s)	23, 50, 276
DpnII	GATC	3 cut(s)	21, 48, 274
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	652
Eam1104I	CTCTTC	3 cut(s)	41, 227, 458
EarI	CTCTTC	3 cut(s)	41, 227, 458
Eco130I	CCWWGG	3 cut(s)	54, 181, 292
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	3 cut(s)	54, 181, 292
ErhI	CCWWGG	3 cut(s)	54, 181, 292
FaeI	CATG	3 cut(s)	159, 252, 296
FalI	AAGNNNNNCTT	2 cut(s)	451, 483
FaqI	GGGAC	3 cut(s)	205, 428, 633
FatI	CATG	3 cut(s)	155, 248, 292
Fnu4HI	GCNGC	2 cut(s)	204, 241
FokI	GGATG	2 cut(s)	569, 686
Fsp4HI	GCNGC	2 cut(s)	204, 241
FspBI	CTAG	4 cut(s)	60, 338, 585, 763
GluI	GCNGC	2 cut(s)	204, 241
GsaI	CCCAGC	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	654
Hin1II	CATG	3 cut(s)	159, 252, 296
HinfI	GANTC	1 cut(s)	193
HphI	GGTGA	2 cut(s)	308, 487
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	1 cut(s)	458
Hpy188III	TCNNGA	1 cut(s)	380
Hpy8I	GTNNAC	1 cut(s)	495
Hpy99I	CGWCG	2 cut(s)	92, 275
HpyAV	CCTTC	3 cut(s)	453, 676, 743
HpyCH4III	ACNGT	2 cut(s)	230, 307
HpyCH4IV	ACGT	1 cut(s)	540
HpyCH4V	TGCA	7 cut(s)	19, 104, 155, 267, 369, 415, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 404
HpyF3I	CTNAG	5 cut(s)	6, 66, 209, 399, 423
HpySE526I	ACGT	1 cut(s)	540
Hsp92II	CATG	3 cut(s)	159, 252, 296
Kzo9I	GATC	3 cut(s)	21, 48, 274
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	1 cut(s)	689
Lsp1109I	GCAGC	2 cut(s)	215, 227
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	4 cut(s)	60, 338, 585, 763
MaeII	ACGT	1 cut(s)	540
MaeIII	GTNAC	4 cut(s)	251, 296, 307, 506
MalI	GATC	3 cut(s)	23, 50, 276
MboI	GATC	3 cut(s)	21, 48, 274
MboII	GAAGA	4 cut(s)	28, 214, 445, 487
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	654
MluCI	AATT	7 cut(s)	29, 257, 613, 625, 637, 731, 758
MluNI	TGGCCA	1 cut(s)	654
MlyI	GAGTC	1 cut(s)	187
MmeI	TCCRAC	2 cut(s)	372, 523
Mox20I	TGGCCA	1 cut(s)	654
MscI	TGGCCA	1 cut(s)	654
MseI	TTAA	1 cut(s)	530
MslI	CAYNNNNRTG	1 cut(s)	708
Msp20I	TGGCCA	1 cut(s)	654
MspR9I	CCNGG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	11, 404
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	3 cut(s)	21, 48, 274
NlaIII	CATG	3 cut(s)	159, 252, 296
NlaIV	GGNNCC	2 cut(s)	287, 465
NmuCI	GTSAC	3 cut(s)	296, 307, 506
NspI	RCATGY	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PfoI	TCCNGGA	1 cut(s)	24
PkrI	GCNGC	2 cut(s)	205, 242
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp1406I	AACGTT	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	2 cut(s)	287, 465
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	21
RsaI	GTAC	2 cut(s)	176, 450
RsaNI	GTAC	2 cut(s)	175, 449
RseI	CAYNNNNRTG	1 cut(s)	708
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	2 cut(s)	204, 241
Sau3AI	GATC	3 cut(s)	21, 48, 274
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	1 cut(s)	26
SfaNI	GCATC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	708
Sse9I	AATT	7 cut(s)	29, 257, 613, 625, 637, 731, 758
SsiI	CCGC	2 cut(s)	201, 243
SspMI	CTAG	4 cut(s)	60, 338, 585, 763
StyD4I	CCNGG	1 cut(s)	24
StyI	CCWWGG	3 cut(s)	54, 181, 292
TaaI	ACNGT	2 cut(s)	230, 307
TaiI	ACGT	1 cut(s)	543
TaqI	TCGA	3 cut(s)	79, 381, 390
TasI	AATT	7 cut(s)	29, 257, 613, 625, 637, 731, 758
TatI	WGTACW	2 cut(s)	174, 448
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	4 cut(s)	220, 235, 310, 316
TseFI	GTSAC	3 cut(s)	296, 307, 506
TseI	GCWGC	2 cut(s)	203, 240
Tsp45I	GTSAC	3 cut(s)	296, 307, 506
TspDTI	ATGAA	1 cut(s)	237
TspRI	CASTG	4 cut(s)	220, 235, 310, 316
XceI	RCATGY	1 cut(s)	159
XspI	CTAG	4 cut(s)	60, 338, 585, 763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.