Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Reverse (-)

40782111 .. 40783392

Gene Structure 1282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCAGATCCTGCAATTGCTCTTCTTTATGCTGATCCCCTTGACTAGTTCTCAGGGAAGTCATGGAGAATACGGAGAATGGCAAACTGCACATGCAACGTTCTATGGGGGAAGTGATGCTACTGGCACAATGGGAGGTGCATGTGGTTATGGAAACTTGTACAGCCAAGGGTACGGGACTCACACCGCAGCTCTAAGCACTGCTCTGTTCAACAGTGGTTTGAGCTGCGGAGCATGTTACCAATTGCGATGCAACGACGACCCCAAATGGTGCCTCCATGGTAACATCATTGTCACTGCCACCAACCTCTGCCCACCTAATCAAGCTTTGTCCAACGACAATGGTGGGTGGTGCAATCCTCCTCTTGAACATTTCGATTTGGCTCAGCCTGCTTTCTTGCAGATTGCTGAGTATCGTGCTGGGATTGTCCCTGTACTATTCCGAAGGGTTCCATGTGAGAAGAAAGGAGGCATAAGGTTCACCATCAATGGTCACTCGTACTTCAACTTGGTGTTGATAACAAACGTTGGGGGTGCAGGGGATGTTAAAACAGTGTCCATCAAGGGATCTAGGACAGGGTGGCTACCAATGTCAAGAAACTGGGGGCAGAATTGGCAGAGCAATTCCTACCTCAATGGCCAAACCCTCTCCTTCAAAATCACAACCAGTGACGGAGCCACACTCACCCACAATAATGTCGTTCCTGCTGGTTGGCAATTTGGACAGACCTTTGAAGGTGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

249

Amino Acids

26.93

Weight (kDa)

7.02

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	31 - 153	5.9e-08	EXPB1-like domain 1
DPBB_1	PF03330	62 - 146	2.3e-20	Lytic transglycolase
Expansin_C	PF01357	158 - 235	1.2e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	270
AciI	CCGC	2 cut(s)	186, 228
AclI	AACGTT	2 cut(s)	98, 525
AclWI	GGATC	2 cut(s)	28, 574
AcoI	YGGCCR	1 cut(s)	637
AfaI	GTAC	4 cut(s)	161, 173, 435, 500
AgsI	TTSAA	5 cut(s)	211, 368, 505, 655, 734
AhlI	ACTAGT	1 cut(s)	44
AluBI	AGCT	3 cut(s)	191, 225, 326
AluI	AGCT	3 cut(s)	191, 225, 326
AlwI	GGATC	2 cut(s)	28, 574
AlwNI	CAGNNNCTG	1 cut(s)	10
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	2 cut(s)	188, 225
AsuHPI	GGTGA	2 cut(s)	472, 676
BalI	TGGCCA	1 cut(s)	639
BanI	GGYRCC	1 cut(s)	270
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbvI	GCAGC	2 cut(s)	200, 212
BccI	CCATC	2 cut(s)	491, 566
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	3 cut(s)	45, 570, 748
BisI	GCNGC	2 cut(s)	189, 226
BlpI	GCTNAGC	1 cut(s)	384
BlsI	GCNGC	2 cut(s)	190, 227
BmiI	GGNNCC	3 cut(s)	272, 450, 676
BmrI	ACTGGG	1 cut(s)	610
BmsI	GCATC	2 cut(s)	106, 239
BmuI	ACTGGG	1 cut(s)	610
BplI	GAGNNNNNCTC	2 cut(s)	666, 698
Bpu1102I	GCTNAGC	1 cut(s)	384
BsaJI	CCNNGG	2 cut(s)	166, 277
Bse1I	ACTGG	3 cut(s)	127, 605, 666
BseDI	CCNNGG	2 cut(s)	166, 277
BseGI	GGATG	1 cut(s)	547
BseMII	CTCAG	3 cut(s)	65, 398, 399
BseNI	ACTGG	3 cut(s)	127, 605, 666
BseRI	GAGGAG	1 cut(s)	351
BseXI	GCAGC	2 cut(s)	200, 212
BseYI	CCCAGC	1 cut(s)	419
BsgI	GTGCAG	2 cut(s)	72, 555
BshFI	GGCC	1 cut(s)	639
BshNI	GGYRCC	1 cut(s)	270
BslFI	GGGAC	2 cut(s)	190, 413
BsmFI	GGGAC	2 cut(s)	190, 413
BsnI	GGCC	1 cut(s)	639
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	6, 33, 566
Bsp1720I	GCTNAGC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	2 cut(s)	186, 228
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	3 cut(s)	64, 397, 400
BspLI	GGNNCC	3 cut(s)	272, 450, 676
BspPI	GGATC	2 cut(s)	28, 574
BspQI	GCTCTTC	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	3 cut(s)	127, 605, 666
BssECI	CCNNGG	2 cut(s)	166, 277
BssMI	GATC	3 cut(s)	6, 33, 566
BssT1I	CCWWGG	2 cut(s)	166, 277
Bst4CI	ACNGT	2 cut(s)	215, 553
Bst6I	CTCTTC	1 cut(s)	26
BstAPI	GCANNNNNTGC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	4 cut(s)	51, 194, 384, 408
BstDSI	CCRYGG	1 cut(s)	277
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	3 cut(s)	9, 36, 569
BstMBI	GATC	3 cut(s)	6, 33, 566
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 389, 613
BstNSI	RCATGY	3 cut(s)	95, 144, 237
BstV1I	GCAGC	2 cut(s)	200, 212
BstX2I	RGATCY	2 cut(s)	6, 566
BstYI	RGATCY	2 cut(s)	6, 566
BsuRI	GGCC	1 cut(s)	639
BtgI	CCRYGG	1 cut(s)	277
BtgZI	GCGATG	1 cut(s)	262
BtsCI	GGATG	1 cut(s)	547
BtsI	GCAGTG	2 cut(s)	198, 294
BtsIMutI	CAGTG	5 cut(s)	198, 220, 294, 558, 673
Cac8I	GCNNGC	1 cut(s)	390
CaiI	CAGNNNCTG	1 cut(s)	10
Csp6I	GTAC	4 cut(s)	160, 172, 434, 499
CviAII	CATG	6 cut(s)	62, 92, 141, 234, 278, 453
CviJI	RGCY	9 cut(s)	165, 191, 225, 326, 383, 388, 583, 639, 677
CviKI_1	RGCY	9 cut(s)	165, 191, 225, 326, 383, 388, 583, 639, 677
CviQI	GTAC	4 cut(s)	160, 172, 434, 499
DdeI	CTNAG	4 cut(s)	51, 194, 384, 408
DpnI	GATC	3 cut(s)	8, 35, 568
DpnII	GATC	3 cut(s)	6, 33, 566
EaeI	YGGCCR	1 cut(s)	637
Eam1104I	CTCTTC	1 cut(s)	26
EarI	CTCTTC	1 cut(s)	26
Eco130I	CCWWGG	2 cut(s)	166, 277
EcoT14I	CCWWGG	2 cut(s)	166, 277
ErhI	CCWWGG	2 cut(s)	166, 277
FaeI	CATG	6 cut(s)	65, 95, 144, 237, 281, 456
FaqI	GGGAC	2 cut(s)	190, 413
FatI	CATG	6 cut(s)	61, 91, 140, 233, 277, 452
Fnu4HI	GCNGC	2 cut(s)	189, 226
FokI	GGATG	1 cut(s)	554
Fsp4HI	GCNGC	2 cut(s)	189, 226
FspBI	CTAG	3 cut(s)	45, 570, 748
GluI	GCNGC	2 cut(s)	189, 226
GsaI	CCCAGC	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	639
Hin1II	CATG	6 cut(s)	65, 95, 144, 237, 281, 456
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	1 cut(s)	178
HphI	GGTGA	2 cut(s)	472, 676
Hpy166II	GTNNAC	1 cut(s)	480
Hpy188I	TCNGA	1 cut(s)	443
Hpy188III	TCNNGA	2 cut(s)	365, 594
Hpy8I	GTNNAC	1 cut(s)	480
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	3 cut(s)	438, 661, 728
HpyCH4III	ACNGT	2 cut(s)	215, 553
HpyCH4IV	ACGT	2 cut(s)	98, 525
HpyCH4V	TGCA	9 cut(s)	4, 13, 89, 95, 140, 252, 354, 400, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 389, 613
HpyF3I	CTNAG	4 cut(s)	51, 194, 384, 408
HpySE526I	ACGT	2 cut(s)	98, 525
Hsp92II	CATG	6 cut(s)	65, 95, 144, 237, 281, 456
Kzo9I	GATC	3 cut(s)	6, 33, 566
LguI	GCTCTTC	1 cut(s)	26
LmnI	GCTCC	2 cut(s)	230, 674
Lsp1109I	GCAGC	2 cut(s)	200, 212
LweI	GCATC	2 cut(s)	106, 239
MaeI	CTAG	3 cut(s)	45, 570, 748
MaeII	ACGT	2 cut(s)	98, 525
MaeIII	GTNAC	5 cut(s)	236, 281, 292, 491, 668
MalI	GATC	3 cut(s)	8, 35, 568
MboI	GATC	3 cut(s)	6, 33, 566
MboII	GAAGA	2 cut(s)	13, 472
MfeI	CAATTG	2 cut(s)	14, 242
MflI	RGATCY	2 cut(s)	6, 566
MlsI	TGGCCA	1 cut(s)	639
MluCI	AATT	6 cut(s)	14, 242, 610, 622, 716, 743
MluNI	TGGCCA	1 cut(s)	639
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	128, 284, 317, 369, 372, 461, 641, 656
Mox20I	TGGCCA	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	639
MseI	TTAA	1 cut(s)	546
MslI	CAYNNNNRTG	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	639
MunI	CAATTG	2 cut(s)	14, 242
MwoI	GCNNNNNNNGC	3 cut(s)	10, 389, 613
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	6, 33, 566
NlaIII	CATG	6 cut(s)	65, 95, 144, 237, 281, 456
NlaIV	GGNNCC	3 cut(s)	272, 450, 676
NmuCI	GTSAC	3 cut(s)	292, 491, 668
NspI	RCATGY	3 cut(s)	95, 144, 237
PciSI	GCTCTTC	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	190, 227
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp1406I	AACGTT	2 cut(s)	98, 525
PspFI	CCCAGC	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	272, 450, 676
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	2 cut(s)	6, 566
RsaI	GTAC	4 cut(s)	161, 173, 435, 500
RsaNI	GTAC	4 cut(s)	160, 172, 434, 499
RseI	CAYNNNNRTG	1 cut(s)	693
SapI	GCTCTTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	546
SatI	GCNGC	2 cut(s)	189, 226
Sau3AI	GATC	3 cut(s)	6, 33, 566
SchI	GAGTC	1 cut(s)	172
SfaNI	GCATC	2 cut(s)	106, 239
SmiMI	CAYNNNNRTG	1 cut(s)	693
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	6 cut(s)	14, 242, 610, 622, 716, 743
SsiI	CCGC	2 cut(s)	186, 228
SspMI	CTAG	3 cut(s)	45, 570, 748
StyI	CCWWGG	2 cut(s)	166, 277
TaaI	ACNGT	2 cut(s)	215, 553
TaiI	ACGT	2 cut(s)	101, 528
TaqI	TCGA	1 cut(s)	375
TasI	AATT	6 cut(s)	14, 242, 610, 622, 716, 743
TatI	WGTACW	2 cut(s)	159, 433
Tru1I	TTAA	1 cut(s)	546
Tru9I	TTAA	1 cut(s)	546
TscAI	CASTG	5 cut(s)	205, 220, 301, 558, 673
TseFI	GTSAC	3 cut(s)	292, 491, 668
TseI	GCWGC	2 cut(s)	188, 225
Tsp45I	GTSAC	3 cut(s)	292, 491, 668
TspGWI	ACGGA	2 cut(s)	87, 687
TspRI	CASTG	5 cut(s)	205, 220, 301, 558, 673
XceI	RCATGY	3 cut(s)	95, 144, 237
XspI	CTAG	3 cut(s)	45, 570, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.