Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Reverse (-)

26924640 .. 26926976

Gene Structure 2337 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G292300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCTATGAAAGCAATGAACATCCTGCAATTTCTCTTGCTTATCCTCCATCTAAGTCTTCAAGCCACACATGGCATTGGCAGATATGGTGGTGAATGGCAAACTGCCCATGCAACATTTTATGGTGGCAGTGATTCTTCTGGCACAATGGGAGGGGCATGTGGTTACGGAAACTTGTACAGCCAAGGCTACGGAACTAGCACAGCAGCTCTAAGCACTGCTCTGTTCAACAATGGTTTAAGCTGCGGGGCATGTTATCAATTAAGATGCAACCATGAGAGTGACCCCAAATGGTGCCTCCCTGGTGGCATCACTATCACAGCCACCAACTTCTGTCCTCCTAATAACGCTTTGTCCAATGACAATGGTGGGTGGTGCAATCCTCCTCTTCAACACTTCGATTTGGCTGAGCCTGCTTTCTTGCACATTGCAGCCTATCGTGCCGGAATTGTCCCCGTACTCTTCAAAAGGGTTCCATGTGTGAAGAAAGGAGGCATAAGGTTCACCATGAATGGTCACTCATACTTCAACTTGGTGTTGATAACAAATGTTGGGGGTTCAGGGGATGTGAGAGCAGTATCGATCAAGGGGTCTAAAACGGGGTGGCTGCCAATGTCAAGAAACTGGGGCCAAAATTGGCAGAGCAACTCCTACCTCAATGGCCAAAGCCTCTCCTTTAAAGTCACCGCTAGCGATGGACTCACACTCACCAGCTCCAATGTCGTGCCTGCTAGTTGGAAATTTGGACAGACCTTTGAAGGTGGTCAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

258

Amino Acids

27.51

Weight (kDa)

8.92

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AciI	CCGC	2 cut(s)	246, 687
AcoI	YGGCCR	1 cut(s)	661
AcsI	RAATTY	1 cut(s)	740
AfaI	GTAC	2 cut(s)	179, 459
AgsI	TTSAA	6 cut(s)	62, 229, 392, 466, 529, 758
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	209, 243, 714
AluI	AGCT	3 cut(s)	209, 243, 714
AoxI	GGCC	2 cut(s)	628, 661
ApeKI	GCWGC	4 cut(s)	206, 243, 431, 607
ApoI	RAATTY	1 cut(s)	740
AspS9I	GGNCC	1 cut(s)	628
AsuHPI	GGTGA	4 cut(s)	104, 496, 676, 700
AsuNHI	GCTAGC	1 cut(s)	689
BalI	TGGCCA	1 cut(s)	663
BanI	GGYRCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	4 cut(s)	218, 230, 443, 594
BccI	CCATC	2 cut(s)	57, 689
BciT130I	CCWGG	1 cut(s)	303
BfaI	CTAG	3 cut(s)	198, 690, 732
BisI	GCNGC	4 cut(s)	207, 244, 432, 608
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	4 cut(s)	208, 245, 433, 609
Bme1390I	CCNGG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	628
BmiI	GGNNCC	3 cut(s)	296, 474, 629
BmrFI	CCNGG	1 cut(s)	303
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	2 cut(s)	257, 318
BmtI	GCTAGC	1 cut(s)	693
BmuI	ACTGGG	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	50
Bpu1102I	GCTNAGC	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	581
BsaJI	CCNNGG	2 cut(s)	184, 301
Bse1I	ACTGG	1 cut(s)	629
Bse3DI	GCAATG	2 cut(s)	21, 426
BseBI	CCWGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	581
BseDI	CCNNGG	2 cut(s)	184, 301
BseGI	GGATG	2 cut(s)	21, 571
BseMI	GCAATG	2 cut(s)	21, 426
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	1 cut(s)	629
BseRI	GAGGAG	1 cut(s)	375
BseXI	GCAGC	4 cut(s)	218, 230, 443, 594
BshFI	GGCC	2 cut(s)	630, 663
BshNI	GGYRCC	1 cut(s)	294
BshVI	ATCGAT	1 cut(s)	581
BsiSI	CCGG	1 cut(s)	444
BslFI	GGGAC	1 cut(s)	437
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	630, 663
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	582
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	2 cut(s)	246, 687
BspANI	GGCC	2 cut(s)	630, 663
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	581
BspLI	GGNNCC	3 cut(s)	296, 474, 629
BspOI	GCTAGC	1 cut(s)	693
BspT107I	GGYRCC	1 cut(s)	294
BsrDI	GCAATG	2 cut(s)	21, 426
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	629
BssECI	CCNNGG	2 cut(s)	184, 301
BssMI	GATC	1 cut(s)	582
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	303
Bst6I	CTCTTC	2 cut(s)	393, 467
BstAUI	TGTACA	1 cut(s)	177
BstC8I	GCNNGC	3 cut(s)	414, 691, 729
BstDEI	CTNAG	3 cut(s)	53, 212, 408
BstF5I	GGATG	2 cut(s)	21, 571
BstKTI	GATC	1 cut(s)	585
BstMBI	GATC	1 cut(s)	582
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 413, 440
BstNI	CCWGG	1 cut(s)	303
BstNSI	RCATGY	2 cut(s)	162, 255
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	4 cut(s)	218, 230, 443, 594
BstV2I	GAAGAC	1 cut(s)	50
Bsu15I	ATCGAT	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	630, 663
BsuTUI	ATCGAT	1 cut(s)	581
BtgZI	GCGATG	1 cut(s)	708
BtsCI	GGATG	2 cut(s)	21, 571
BtsI	GCAGTG	2 cut(s)	136, 216
BtsIMutI	CAGTG	2 cut(s)	136, 216
Cac8I	GCNNGC	3 cut(s)	414, 691, 729
Cfr13I	GGNCC	1 cut(s)	628
ClaI	ATCGAT	1 cut(s)	581
Csp6I	GTAC	2 cut(s)	178, 458
CviAII	CATG	7 cut(s)	71, 110, 159, 252, 275, 477, 508
CviQI	GTAC	2 cut(s)	178, 458
DdeI	CTNAG	3 cut(s)	53, 212, 408
DpnI	GATC	1 cut(s)	584
DpnII	GATC	1 cut(s)	582
DraI	TTTAAA	1 cut(s)	679
EaeI	YGGCCR	1 cut(s)	661
Eam1104I	CTCTTC	2 cut(s)	393, 467
EarI	CTCTTC	2 cut(s)	393, 467
Eco130I	CCWWGG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	7 cut(s)	74, 113, 162, 255, 278, 480, 511
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	7 cut(s)	70, 109, 158, 251, 274, 476, 507
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	4 cut(s)	207, 244, 432, 608
FokI	GGATG	2 cut(s)	8, 578
Fsp4HI	GCNGC	4 cut(s)	207, 244, 432, 608
FspBI	CTAG	3 cut(s)	198, 690, 732
GluI	GCNGC	4 cut(s)	207, 244, 432, 608
HaeIII	GGCC	2 cut(s)	630, 663
HapII	CCGG	1 cut(s)	444
Hin1II	CATG	7 cut(s)	74, 113, 162, 255, 278, 480, 511
HinfI	GANTC	2 cut(s)	134, 699
HpaII	CCGG	1 cut(s)	444
HphI	GGTGA	4 cut(s)	104, 496, 676, 700
Hpy166II	GTNNAC	1 cut(s)	504
Hpy188III	TCNNGA	1 cut(s)	618
Hpy8I	GTNNAC	1 cut(s)	504
HpyAV	CCTTC	1 cut(s)	752
HpyCH4V	TGCA	6 cut(s)	28, 113, 270, 378, 424, 431
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 413, 440
HpyF3I	CTNAG	3 cut(s)	53, 212, 408
Hsp92II	CATG	7 cut(s)	74, 113, 162, 255, 278, 480, 511
Kzo9I	GATC	1 cut(s)	582
LmnI	GCTCC	1 cut(s)	719
Lsp1109I	GCAGC	4 cut(s)	218, 230, 443, 594
LweI	GCATC	2 cut(s)	257, 318
MaeI	CTAG	3 cut(s)	198, 690, 732
MaeIII	GTNAC	4 cut(s)	164, 281, 515, 682
MalI	GATC	1 cut(s)	584
MboI	GATC	1 cut(s)	582
MboII	GAAGA	5 cut(s)	50, 129, 380, 454, 496
MlsI	TGGCCA	1 cut(s)	663
MluCI	AATT	6 cut(s)	29, 260, 447, 634, 740, 767
MluNI	TGGCCA	1 cut(s)	663
MlyI	GAGTC	1 cut(s)	693
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	9 cut(s)	56, 146, 308, 348, 393, 396, 485, 665, 680
Mox20I	TGGCCA	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	663
MseI	TTAA	3 cut(s)	239, 263, 678
MslI	CAYNNNNRTG	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	663
MspI	CCGG	1 cut(s)	444
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	11, 413, 440
NdeII	GATC	1 cut(s)	582
NheI	GCTAGC	1 cut(s)	689
NlaIII	CATG	7 cut(s)	74, 113, 162, 255, 278, 480, 511
NlaIV	GGNNCC	3 cut(s)	296, 474, 629
NmuCI	GTSAC	3 cut(s)	281, 515, 682
NspI	RCATGY	2 cut(s)	162, 255
PfeI	GAWTC	1 cut(s)	134
PkrI	GCNGC	4 cut(s)	208, 245, 433, 609
PleI	GAGTC	1 cut(s)	693
PpsI	GAGTC	1 cut(s)	693
Psp6I	CCWGG	1 cut(s)	301
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	3 cut(s)	296, 474, 629
PspPI	GGNCC	1 cut(s)	628
RsaI	GTAC	2 cut(s)	179, 459
RsaNI	GTAC	2 cut(s)	178, 458
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	3 cut(s)	239, 263, 678
SatI	GCNGC	4 cut(s)	207, 244, 432, 608
Sau3AI	GATC	1 cut(s)	582
Sau96I	GGNCC	1 cut(s)	628
SchI	GAGTC	1 cut(s)	693
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	7 cut(s)	211, 245, 503, 657, 716, 755, 763
SfaNI	GCATC	2 cut(s)	257, 318
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	6 cut(s)	29, 260, 447, 634, 740, 767
SsiI	CCGC	2 cut(s)	246, 687
SspMI	CTAG	3 cut(s)	198, 690, 732
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	184
TaqI	TCGA	2 cut(s)	399, 581
TasI	AATT	6 cut(s)	29, 260, 447, 634, 740, 767
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	3 cut(s)	239, 263, 678
Tru9I	TTAA	3 cut(s)	239, 263, 678
TscAI	CASTG	2 cut(s)	136, 223
TseFI	GTSAC	3 cut(s)	281, 515, 682
TseI	GCWGC	4 cut(s)	206, 243, 431, 607
Tsp45I	GTSAC	3 cut(s)	281, 515, 682
TspDTI	ATGAA	3 cut(s)	23, 32, 524
TspGWI	ACGGA	2 cut(s)	183, 207
TspRI	CASTG	2 cut(s)	136, 223
XapI	RAATTY	1 cut(s)	740
XceI	RCATGY	2 cut(s)	162, 255
XspI	CTAG	3 cut(s)	198, 690, 732

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.