Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0008203

Physical Location & Seq

Genomic Coordinates Reverse (-)

41101629 .. 41102807

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024988

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGACTAAGAAAGCAATGCAGATCCTGCAATTGCTCTTCTTTATGCTGATCCCCTTGACTAGTTCTCAGGGAAGTCGTGGAGAATGGCAAACTGCACATGCAACATTCTATGGGGGAAGTGATGCTACTGGCACAATGGGAGGTGCATGTGGTTATGGAAACTTGTACAGCCAAGGGTACGGGACACGCACCGCAGCTCTAAGCACTGCTCTCTTCAACAGTGGTTTGAGCTGCGGAGCATGTTACCAATTGCGATGCAACGACGACCCCAAATGGTGCCTCCATGGTGACATCATTGTCACTGCCACCAACCTCTGCCCACCAAATCAAGCTTTGTCCAACGACAATGGTGGGTGGTGCAATCCTCCTCTTGAACATTTCGATTTGGCTCAGCCTGCTTTCTTGCAGATTGCTGAGTATCGTGCTGGGATTGTCCCTGTACTATTCCGAAGGGTTCCATGTGAGAAGAAAGGAGGCATAAGGTTCACCATCAATGGTCACTCATACTTCAACTTGGTGTTGATAACAAACGTTGGGGGTGCAGGGGATGTTACAACAGTGTCCATCAAGGGATCTAGGACAGGGTGGCTACCAATGTCAAGAAACTGGGGGCAGAATTGGCAGAGCAATTCCTACCTCAATGGCCAAACCCTCTCCTTCAAAATCACAACCAGTAACGGAGCCACACTCACCCACAATAATGTCGTTCCTGCTAGTTGGCAATTTGGACAGACCTTTGAAGGTGGTCAATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

252

Amino Acids

27.18

Weight (kDa)

8.63

Isoelectric Point (pI)

27.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	33 - 155	7e-08	EXPB1-like domain 1
DPBB_1	PF03330	64 - 148	3.2e-20	Lytic transglycolase
Expansin_C	PF01357	160 - 237	4.4e-32	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26770 AT1G26770 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT1G69530 AT2G03090
fragaria_vesca	FvH4_6g10010
malus_domestica	MD04G1173400.v1.1
prunus_persica	Prupe.6G292300_v2.0.a1
pyrus_communis	pycom04g15320
rosa_chinensis	RchiOBHm_Chr3g0460691
rosa_laevigata	RLG00000024988
rosa_multiflora	Rmu_sc0011069.1_g000009
rosa_roxburghii	Rroxscaffold_6G00419300
rosa_rugosa	Rorug03G0045100 Rorug03G0045200
rosa_samantha	Rh3AG102700 Rh3BG106400 Rh3CG108300 Rh3DG107800
rosa_wichuraiana	Rw3G008740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	276
AciI	CCGC	2 cut(s)	192, 234
AclI	AACGTT	1 cut(s)	531
AclWI	GGATC	3 cut(s)	16, 43, 580
AcoI	YGGCCR	1 cut(s)	643
AfaI	GTAC	3 cut(s)	167, 179, 441
AgsI	TTSAA	5 cut(s)	217, 374, 511, 661, 740
AhlI	ACTAGT	1 cut(s)	59
AluBI	AGCT	3 cut(s)	197, 231, 332
AluI	AGCT	3 cut(s)	197, 231, 332
AlwI	GGATC	3 cut(s)	16, 43, 580
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	1 cut(s)	643
ApeKI	GCWGC	2 cut(s)	194, 231
AsuHPI	GGTGA	3 cut(s)	299, 478, 682
BalI	TGGCCA	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	276
BarI	GAAGNNNNNNTAC	2 cut(s)	109, 141
BbvI	GCAGC	2 cut(s)	206, 218
BccI	CCATC	2 cut(s)	497, 572
BcuI	ACTAGT	1 cut(s)	59
BfaI	CTAG	4 cut(s)	60, 576, 714, 754
BisI	GCNGC	2 cut(s)	195, 232
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	2 cut(s)	196, 233
BmiI	GGNNCC	3 cut(s)	278, 456, 682
BmrI	ACTGGG	1 cut(s)	616
BmsI	GCATC	2 cut(s)	112, 245
BmuI	ACTGGG	1 cut(s)	616
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaJI	CCNNGG	2 cut(s)	172, 283
Bse1I	ACTGG	3 cut(s)	133, 611, 672
Bse3DI	GCAATG	1 cut(s)	21
BseDI	CCNNGG	2 cut(s)	172, 283
BseGI	GGATG	1 cut(s)	553
BseMI	GCAATG	1 cut(s)	21
BseMII	CTCAG	3 cut(s)	80, 404, 405
BseNI	ACTGG	3 cut(s)	133, 611, 672
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	206, 218
BseYI	CCCAGC	1 cut(s)	425
BsgI	GTGCAG	2 cut(s)	78, 561
BshFI	GGCC	1 cut(s)	645
BshNI	GGYRCC	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	196, 419
BsmFI	GGGAC	2 cut(s)	196, 419
BsnI	GGCC	1 cut(s)	645
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	21, 48, 572
Bsp1720I	GCTNAGC	1 cut(s)	390
Bsp19I	CCATGG	1 cut(s)	283
BspACI	CCGC	2 cut(s)	192, 234
BspANI	GGCC	1 cut(s)	645
BspCNI	CTCAG	3 cut(s)	79, 403, 406
BspLI	GGNNCC	3 cut(s)	278, 456, 682
BspPI	GGATC	3 cut(s)	16, 43, 580
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	21
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	3 cut(s)	133, 611, 672
BssECI	CCNNGG	2 cut(s)	172, 283
BssMI	GATC	3 cut(s)	21, 48, 572
BssT1I	CCWWGG	2 cut(s)	172, 283
Bst4CI	ACNGT	2 cut(s)	221, 559
Bst6I	CTCTTC	2 cut(s)	41, 218
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstAUI	TGTACA	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	5 cut(s)	6, 66, 200, 390, 414
BstDSI	CCRYGG	1 cut(s)	283
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	3 cut(s)	24, 51, 575
BstMBI	GATC	3 cut(s)	21, 48, 572
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 395, 619
BstNSI	RCATGY	3 cut(s)	101, 150, 243
BstV1I	GCAGC	2 cut(s)	206, 218
BstX2I	RGATCY	2 cut(s)	21, 572
BstYI	RGATCY	2 cut(s)	21, 572
BsuRI	GGCC	1 cut(s)	645
BtgI	CCRYGG	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	553
BtsI	GCAGTG	2 cut(s)	204, 300
BtsIMutI	CAGTG	4 cut(s)	204, 226, 300, 564
Cac8I	GCNNGC	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	25
Csp6I	GTAC	3 cut(s)	166, 178, 440
CviAII	CATG	5 cut(s)	98, 147, 240, 284, 459
CviJI	RGCY	9 cut(s)	171, 197, 231, 332, 389, 394, 589, 645, 683
CviKI_1	RGCY	9 cut(s)	171, 197, 231, 332, 389, 394, 589, 645, 683
CviQI	GTAC	3 cut(s)	166, 178, 440
DdeI	CTNAG	5 cut(s)	6, 66, 200, 390, 414
DpnI	GATC	3 cut(s)	23, 50, 574
DpnII	GATC	3 cut(s)	21, 48, 572
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	2 cut(s)	41, 218
EarI	CTCTTC	2 cut(s)	41, 218
Eco130I	CCWWGG	2 cut(s)	172, 283
EcoT14I	CCWWGG	2 cut(s)	172, 283
ErhI	CCWWGG	2 cut(s)	172, 283
FaeI	CATG	5 cut(s)	101, 150, 243, 287, 462
FaqI	GGGAC	2 cut(s)	196, 419
FatI	CATG	5 cut(s)	97, 146, 239, 283, 458
Fnu4HI	GCNGC	2 cut(s)	195, 232
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	2 cut(s)	195, 232
FspBI	CTAG	4 cut(s)	60, 576, 714, 754
GluI	GCNGC	2 cut(s)	195, 232
GsaI	CCCAGC	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	645
Hin1II	CATG	5 cut(s)	101, 150, 243, 287, 462
HindIII	AAGCTT	1 cut(s)	330
HphI	GGTGA	3 cut(s)	299, 478, 682
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	1 cut(s)	449
Hpy188III	TCNNGA	2 cut(s)	371, 600
Hpy8I	GTNNAC	1 cut(s)	486
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	3 cut(s)	444, 667, 734
HpyCH4III	ACNGT	2 cut(s)	221, 559
HpyCH4IV	ACGT	1 cut(s)	531
HpyCH4V	TGCA	9 cut(s)	19, 28, 95, 101, 146, 258, 360, 406, 542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 395, 619
HpyF3I	CTNAG	5 cut(s)	6, 66, 200, 390, 414
HpySE526I	ACGT	1 cut(s)	531
Hsp92II	CATG	5 cut(s)	101, 150, 243, 287, 462
Kzo9I	GATC	3 cut(s)	21, 48, 572
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	236, 680
Lsp1109I	GCAGC	2 cut(s)	206, 218
LweI	GCATC	2 cut(s)	112, 245
MaeI	CTAG	4 cut(s)	60, 576, 714, 754
MaeII	ACGT	1 cut(s)	531
MaeIII	GTNAC	6 cut(s)	242, 287, 298, 497, 550, 674
MalI	GATC	3 cut(s)	23, 50, 574
MboI	GATC	3 cut(s)	21, 48, 572
MboII	GAAGA	3 cut(s)	28, 205, 478
MfeI	CAATTG	2 cut(s)	29, 248
MflI	RGATCY	2 cut(s)	21, 572
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	6 cut(s)	29, 248, 616, 628, 722, 749
MluNI	TGGCCA	1 cut(s)	645
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	8 cut(s)	134, 290, 323, 375, 378, 467, 647, 662
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MslI	CAYNNNNRTG	1 cut(s)	699
Msp20I	TGGCCA	1 cut(s)	645
MunI	CAATTG	2 cut(s)	29, 248
MwoI	GCNNNNNNNGC	3 cut(s)	25, 395, 619
NcoI	CCATGG	1 cut(s)	283
NdeII	GATC	3 cut(s)	21, 48, 572
NlaIII	CATG	5 cut(s)	101, 150, 243, 287, 462
NlaIV	GGNNCC	3 cut(s)	278, 456, 682
NmuCI	GTSAC	3 cut(s)	287, 298, 497
NspI	RCATGY	3 cut(s)	101, 150, 243
PciSI	GCTCTTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	196, 233
Psp1406I	AACGTT	1 cut(s)	531
PspFI	CCCAGC	1 cut(s)	425
PspN4I	GGNNCC	3 cut(s)	278, 456, 682
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	2 cut(s)	21, 572
RsaI	GTAC	3 cut(s)	167, 179, 441
RsaNI	GTAC	3 cut(s)	166, 178, 440
RseI	CAYNNNNRTG	1 cut(s)	699
SapI	GCTCTTC	1 cut(s)	41
SatI	GCNGC	2 cut(s)	195, 232
Sau3AI	GATC	3 cut(s)	21, 48, 572
SfaNI	GCATC	2 cut(s)	112, 245
SmiMI	CAYNNNNRTG	1 cut(s)	699
SpeI	ACTAGT	1 cut(s)	59
Sse9I	AATT	6 cut(s)	29, 248, 616, 628, 722, 749
SsiI	CCGC	2 cut(s)	192, 234
SspMI	CTAG	4 cut(s)	60, 576, 714, 754
StyI	CCWWGG	2 cut(s)	172, 283
TaaI	ACNGT	2 cut(s)	221, 559
TaiI	ACGT	1 cut(s)	534
TaqI	TCGA	1 cut(s)	381
TasI	AATT	6 cut(s)	29, 248, 616, 628, 722, 749
TatI	WGTACW	2 cut(s)	165, 439
TscAI	CASTG	4 cut(s)	211, 226, 307, 564
TseFI	GTSAC	3 cut(s)	287, 298, 497
TseI	GCWGC	2 cut(s)	194, 231
Tsp45I	GTSAC	3 cut(s)	287, 298, 497
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	4 cut(s)	211, 226, 307, 564
XceI	RCATGY	3 cut(s)	101, 150, 243
XspI	CTAG	4 cut(s)	60, 576, 714, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.