AT1G27760
ERF Family

Interferon-related developmental regulator

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
9668508 .. 9671657
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27760.2

Sequence Viewer

Length: 1314 bp
ATGGGGAGGAAATCTCAGCGTAAGAACGCGACAATGTTTGATAGTGATGATGATACAAGTAGTGTAAGCTCTTCCTCCACCATGCCATCTGAGAGATTGTTGAATCCTGGTATGGATGAAGTTACTGTTCTCAAGGATGCTTTGTTAGATCAATCCCTTGATGCTCTCTATGAGAAAAGAGAGCAAGCTTTGGCCACCATTGTTGACGCATTTAACAGCGACTTGCAGTATGAGTTTGTTGAAAAGAAGTTTGCCACTTTATTGCACCAGTGTTTACACTGCACCAAGAAAGGGTCTACTAAGGAGACTTCATTAGCAACTCATGTCATTGGGTTGCTAGCGTTAACTGTTGGACTCGGGGATCATGCACAAGAGGTTTTGGAAGAATCTGTCACTCCTCTGTCTCAAGCCCTTAAATCTGGTCGTGAAATCTTGAAAATAACTTCGATACTTGAGTGTTTAGCAGTCATAACCTTCGTTGGCGGGAATGATCCAGAGCAAACCGAGAAATCTATGCAGATTATCTGGCAAATGATCCACCCCAAACTAGGGTCTAATGTTGTGGCAACTAAACCTTCACCTGCTGTAATAAGTGCTGTTGTATCTTCCTGGGCTTTTCTGCTCACAACAGTTGATCGGTGGACTCTAGGTCCTAAAATTTTTCAAGAGACTGTAACTTATCTCTCTACATTGTTGGAAAAGGATGACCGATCTGTACGTATAGCTGCTGGTGAAGCGCTTGCAGTAATATATGAGTTGGGAACTCTAGAGAAGTTCGCTGCCGAAGTCAAAGGGTCTGCTAATGGATCAGTGAAAGAAGGAGGTGTCTCTCAGGAAGCATTGATGCACATGCATGGCTTGAAAGCTAAAGTCACTAAACAAGTTAGAGAGCTCTCTGTAGAGGCAGGTGGTAAAGGTTCTGCTAAGAAAGATCTCAACACCCAACGAAATTTGTTCAAAGATCTTGTTGAATTTCTTGAGGATGGATATGCTCCTGAAACCTCAACAAAAGTCGGAGGGGACTATTTACAGACGTCAACGTGGTATCAGATGATACAGTTGAATTATTTGAAGCATTTCCTAGGGGGTGGCTTTATTAAGCATATGCAGGAGAATGAATTCCTTCATGATGTATTTAGTTTCACTCCAAAGAAGATTGGTGGAGGAAAGTTGTCTAATGACGAAAAGAGGTTGTTTAAATCACCAAACTCAGCTCTTAACAAAGCAAGAACGCAGTTCCTGGCCAAGCAAAGGATGTTAGCTAAGAATATGAACGTTGGGCATTACGCAGCTACAGCAATGGAGGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

437

Amino Acids

48.12

Weight (kDa)

6.3

Isoelectric Point (pI)

33.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 9 - 316 2.8e-82 Interferon-related developmental regulator (IFRD)
IFRD_C PF04836 361 - 410 1.6e-14 Interferon-related protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 589, 896
AatII GACGTC 1 cut(s) 1037
Acc36I ACCTGC 2 cut(s) 589, 896
AccI GTMKAC 1 cut(s) 296
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 483
AclI AACGTT 1 cut(s) 1275
AclWI GGATC 4 cut(s) 369, 485, 529, 814
AcoI YGGCCR 2 cut(s) 192, 1242
AcsI RAATTY 4 cut(s) 657, 949, 971, 1118
AcyI GRCGYC 1 cut(s) 1034
AfaI GTAC 1 cut(s) 717
AfeI AGCGCT 1 cut(s) 738
AfiI CCNNNNNNNGG 4 cut(s) 291, 548, 549, 1251
AgsI TTSAA 9 cut(s) 103, 242, 436, 665, 862, 958, 971, 1063, 1072
AhdI GACNNNNNGTC 1 cut(s) 648
AjnI CCWGG 3 cut(s) 106, 608, 1239
AluBI AGCT 8 cut(s) 69, 188, 725, 866, 892, 1214, 1262, 1292
AluI AGCT 8 cut(s) 69, 188, 725, 866, 892, 1214, 1262, 1292
Alw21I GWGCWC 1 cut(s) 894
Alw26I GTCTC 4 cut(s) 299, 408, 662, 832
AlwI GGATC 4 cut(s) 369, 485, 529, 814
AlwNI CAGNNNCTG 1 cut(s) 1240
Ama87I CYCGRG 1 cut(s) 356
Aor51HI AGCGCT 1 cut(s) 738
AoxI GGCC 2 cut(s) 192, 1242
ApeKI GCWGC 3 cut(s) 725, 779, 1289
ApoI RAATTY 4 cut(s) 657, 949, 971, 1118
Asp700I GAANNNNTTC 3 cut(s) 1076, 1118, 1122
AspA2I CCTAGG 1 cut(s) 1081
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 1 cut(s) 650
AsuHPI GGTGA 3 cut(s) 570, 743, 1194
AsuNHI GCTAGC 1 cut(s) 337
AvaI CYCGRG 1 cut(s) 356
AvaII GGWCC 1 cut(s) 650
AvrII CCTAGG 1 cut(s) 1081
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BalI TGGCCA 2 cut(s) 194, 1244
BanII GRGCYC 1 cut(s) 894
Bbv12I GWGCWC 1 cut(s) 894
BbvI GCAGC 3 cut(s) 712, 766, 1301
BccI CCATC 2 cut(s) 94, 977
BciT130I CCWGG 3 cut(s) 108, 610, 1241
BcoDI GTCTC 4 cut(s) 299, 408, 662, 832
BfaI CTAG 5 cut(s) 338, 548, 647, 767, 1082
BfmI CTRYAG 2 cut(s) 897, 1293
BfoI RGCGCY 1 cut(s) 740
BfuAI ACCTGC 2 cut(s) 589, 896
BglII AGATCT 2 cut(s) 931, 961
BisI GCNGC 3 cut(s) 726, 780, 1290
BlnI CCTAGG 1 cut(s) 1081
BlsI GCNGC 3 cut(s) 727, 781, 1291
Bme1390I CCNGG 3 cut(s) 108, 610, 1241
Bme18I GGWCC 1 cut(s) 650
BmeRI GACNNNNNGTC 1 cut(s) 648
BmeT110I CYCGRG 1 cut(s) 356
BmgT120I GGNCC 1 cut(s) 650
BmrFI CCNGG 3 cut(s) 108, 610, 1241
BmsI GCATC 3 cut(s) 127, 151, 834
BmtI GCTAGC 1 cut(s) 341
BplI GAGNNNNNCTC 1 cut(s) 30
BpuEI CTTGAG 4 cut(s) 116, 390, 473, 998
BsaAI YACGTR 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 1034
BsaJI CCNNGG 2 cut(s) 609, 1081
Bsc4I CCNNNNNNNGG 4 cut(s) 291, 548, 549, 1251
Bse1I ACTGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 1305
BseBI CCWGG 3 cut(s) 108, 610, 1241
BseDI CCNNGG 2 cut(s) 609, 1081
BseGI GGATG 5 cut(s) 121, 142, 709, 988, 1260
BseLI CCNNNNNNNGG 4 cut(s) 291, 548, 549, 1251
BseMI GCAATG 1 cut(s) 1305
BseMII CTCAG 4 cut(s) 29, 81, 845, 1224
BseNI ACTGG 1 cut(s) 268
BseRI GAGGAG 1 cut(s) 387
BseXI GCAGC 3 cut(s) 712, 766, 1301
BsgI GTGCAG 1 cut(s) 265
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 2 cut(s) 194, 1244
BsiHKAI GWGCWC 1 cut(s) 894
BsiHKCI CYCGRG 1 cut(s) 356
BslFI GGGAC 1 cut(s) 1034
BslI CCNNNNNNNGG 4 cut(s) 291, 548, 549, 1251
BsmAI GTCTC 4 cut(s) 299, 408, 662, 832
BsmFI GGGAC 1 cut(s) 1034
BsnI GGCC 2 cut(s) 194, 1244
BsoBI CYCGRG 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 894
Bsp143I GATC 9 cut(s) 148, 361, 490, 534, 634, 710, 806, 931, 961
BspACI CCGC 1 cut(s) 483
BspANI GGCC 2 cut(s) 194, 1244
BspCNI CTCAG 4 cut(s) 28, 82, 844, 1223
BspFNI CGCG 1 cut(s) 29
BspHI TCATGA 1 cut(s) 1126
BspMI ACCTGC 2 cut(s) 589, 896
BspOI GCTAGC 1 cut(s) 341
BspPI GGATC 4 cut(s) 369, 485, 529, 814
BspQI GCTCTTC 1 cut(s) 76
BsrDI GCAATG 1 cut(s) 1305
BsrI ACTGG 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 609, 1081
BssMI GATC 9 cut(s) 148, 361, 490, 534, 634, 710, 806, 931, 961
BssNI GRCGYC 1 cut(s) 1034
BssT1I CCWWGG 1 cut(s) 1081
Bst2UI CCWGG 3 cut(s) 108, 610, 1241
Bst4CI ACNGT 5 cut(s) 127, 349, 631, 673, 1059
Bst6I CTCTTC 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 1034
BstBAI YACGTR 1 cut(s) 719
BstC8I GCNNGC 3 cut(s) 186, 339, 741
BstDEI CTNAG 7 cut(s) 15, 90, 300, 831, 924, 1210, 1263
BstF5I GGATG 5 cut(s) 121, 142, 709, 988, 1260
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 740
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 9 cut(s) 151, 364, 493, 537, 637, 713, 809, 934, 964
BstMAI GTCTC 4 cut(s) 299, 408, 662, 832
BstMBI GATC 9 cut(s) 148, 361, 490, 534, 634, 710, 806, 931, 961
BstMWI GCNNNNNNNGC 2 cut(s) 734, 1295
BstNI CCWGG 3 cut(s) 108, 610, 1241
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 3 cut(s) 106, 608, 1239
BstSFI CTRYAG 2 cut(s) 897, 1293
BstSNI TACGTA 1 cut(s) 719
BstUI CGCG 1 cut(s) 29
BstV1I GCAGC 3 cut(s) 712, 766, 1301
BstX2I RGATCY 2 cut(s) 931, 961
BstYI RGATCY 2 cut(s) 931, 961
BsuRI GGCC 2 cut(s) 194, 1244
BtsCI GGATG 5 cut(s) 121, 142, 709, 988, 1260
BtsI GCAGTG 1 cut(s) 277
BtsIMutI CAGTG 3 cut(s) 275, 277, 816
BveI ACCTGC 2 cut(s) 589, 896
Cac8I GCNNGC 3 cut(s) 186, 339, 741
CaiI CAGNNNCTG 1 cut(s) 1240
CciI TCATGA 1 cut(s) 1126
CfoI GCGC 1 cut(s) 739
Cfr13I GGNCC 1 cut(s) 650
CseI GACGC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 716
CspCI CAANNNNNGTGG 2 cut(s) 184, 219
CviAII CATG 6 cut(s) 82, 323, 365, 850, 854, 1127
CviQI GTAC 1 cut(s) 716
DdeI CTNAG 7 cut(s) 15, 90, 300, 831, 924, 1210, 1263
DpnI GATC 9 cut(s) 150, 363, 492, 536, 636, 712, 808, 933, 963
DpnII GATC 9 cut(s) 148, 361, 490, 534, 634, 710, 806, 931, 961
DraI TTTAAA 1 cut(s) 1198
DriI GACNNNNNGTC 1 cut(s) 648
EaeI YGGCCR 2 cut(s) 192, 1242
Eam1104I CTCTTC 1 cut(s) 76
Eam1105I GACNNNNNGTC 1 cut(s) 648
EarI CTCTTC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 892
Eco105I TACGTA 1 cut(s) 719
Eco130I CCWWGG 1 cut(s) 1081
Eco24I GRGCYC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 650
Eco47III AGCGCT 1 cut(s) 738
Eco53kI GAGCTC 1 cut(s) 892
Eco88I CYCGRG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 892
EcoO109I RGGNCCY 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 1118
EcoRII CCWGG 3 cut(s) 106, 608, 1239
EcoT14I CCWWGG 1 cut(s) 1081
EcoT22I ATGCAT 1 cut(s) 855
EcoT38I GRGCYC 1 cut(s) 894
ErhI CCWWGG 1 cut(s) 1081
FaeI CATG 6 cut(s) 85, 326, 368, 853, 857, 1130
FaqI GGGAC 1 cut(s) 1034
FatI CATG 6 cut(s) 81, 322, 364, 849, 853, 1126
FauI CCCGC 1 cut(s) 476
FauNDI CATATG 1 cut(s) 1104
FblI GTMKAC 1 cut(s) 296
Fnu4HI GCNGC 3 cut(s) 726, 780, 1290
FokI GGATG 5 cut(s) 128, 149, 716, 995, 1267
FriOI GRGCYC 1 cut(s) 894
Fsp4HI GCNGC 3 cut(s) 726, 780, 1290
FspBI CTAG 5 cut(s) 338, 548, 647, 767, 1082
GlaI GCGC 1 cut(s) 738
GluI GCNGC 3 cut(s) 726, 780, 1290
HaeII RGCGCY 1 cut(s) 740
HaeIII GGCC 2 cut(s) 194, 1244
HgaI GACGC 1 cut(s) 215
HhaI GCGC 1 cut(s) 739
Hin1I GRCGYC 1 cut(s) 1034
Hin1II CATG 6 cut(s) 85, 326, 368, 853, 857, 1130
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HincII GTYRAC 3 cut(s) 205, 345, 1038
HindII GTYRAC 3 cut(s) 205, 345, 1038
HindIII AAGCTT 1 cut(s) 186
HinfI GANTC 4 cut(s) 103, 354, 386, 643
HpaI GTTAAC 1 cut(s) 345
HphI GGTGA 3 cut(s) 570, 743, 1194
Hpy166II GTNNAC 6 cut(s) 205, 275, 297, 345, 642, 1038
Hpy188I TCNGA 3 cut(s) 91, 1016, 1050
Hpy188III TCNNGA 9 cut(s) 425, 433, 494, 665, 767, 833, 977, 995, 1127
Hpy8I GTNNAC 6 cut(s) 205, 275, 297, 345, 642, 1038
HpyAV CCTTC 4 cut(s) 484, 585, 812, 1133
HpyCH4III ACNGT 5 cut(s) 127, 349, 631, 673, 1059
HpyCH4IV ACGT 4 cut(s) 718, 1034, 1040, 1275
HpyCH4V TGCA 9 cut(s) 226, 265, 282, 368, 517, 743, 847, 853, 1108
HpyF10VI GCNNNNNNNGC 2 cut(s) 734, 1295
HpyF3I CTNAG 7 cut(s) 15, 90, 300, 831, 924, 1210, 1263
HpySE526I ACGT 4 cut(s) 718, 1034, 1040, 1275
Hsp92I GRCGYC 1 cut(s) 1034
Hsp92II CATG 6 cut(s) 85, 326, 368, 853, 857, 1130
HspAI GCGC 1 cut(s) 737
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 9 cut(s) 148, 361, 490, 534, 634, 710, 806, 931, 961
LguI GCTCTTC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 997
Lsp1109I GCAGC 3 cut(s) 712, 766, 1301
LweI GCATC 3 cut(s) 127, 151, 834
MaeI CTAG 5 cut(s) 338, 548, 647, 767, 1082
MaeII ACGT 4 cut(s) 718, 1034, 1040, 1275
MaeIII GTNAC 4 cut(s) 121, 391, 673, 871
MalI GATC 9 cut(s) 150, 363, 492, 536, 636, 712, 808, 933, 963
MboI GATC 9 cut(s) 148, 361, 490, 534, 634, 710, 806, 931, 961
MboII GAAGA 4 cut(s) 63, 395, 597, 1165
MflI RGATCY 2 cut(s) 931, 961
MhlI GDGCHC 1 cut(s) 894
MlsI TGGCCA 2 cut(s) 194, 1244
MluCI AATT 5 cut(s) 657, 949, 971, 1063, 1118
MluNI TGGCCA 2 cut(s) 194, 1244
MlyI GAGTC 2 cut(s) 348, 637
MmeI TCCRAC 3 cut(s) 331, 675, 994
Mox20I TGGCCA 2 cut(s) 194, 1244
Mph1103I ATGCAT 1 cut(s) 855
MroXI GAANNNNTTC 3 cut(s) 1076, 1118, 1122
MscI TGGCCA 2 cut(s) 194, 1244
MseI TTAA 6 cut(s) 213, 344, 414, 1098, 1197, 1218
MslI CAYNNNNRTG 1 cut(s) 852
Msp20I TGGCCA 2 cut(s) 194, 1244
MspR9I CCNGG 3 cut(s) 108, 610, 1241
MvaI CCWGG 3 cut(s) 108, 610, 1241
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 734, 1295
NdeI CATATG 1 cut(s) 1104
NdeII GATC 9 cut(s) 148, 361, 490, 534, 634, 710, 806, 931, 961
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 6 cut(s) 85, 326, 368, 853, 857, 1130
NmuCI GTSAC 2 cut(s) 391, 871
NsiI ATGCAT 1 cut(s) 855
NspI RCATGY 1 cut(s) 853
PagI TCATGA 1 cut(s) 1126
PaqCI CACCTGC 2 cut(s) 589, 896
PciSI GCTCTTC 1 cut(s) 76
PdmI GAANNNNTTC 3 cut(s) 1076, 1118, 1122
PfeI GAWTC 2 cut(s) 103, 386
PkrI GCNGC 3 cut(s) 727, 781, 1291
PleI GAGTC 2 cut(s) 348, 637
PpsI GAGTC 2 cut(s) 348, 637
Ppu21I YACGTR 1 cut(s) 719
PpuMI RGGWCCY 1 cut(s) 650
Psp124BI GAGCTC 1 cut(s) 894
Psp1406I AACGTT 1 cut(s) 1275
Psp5II RGGWCCY 1 cut(s) 650
Psp6I CCWGG 3 cut(s) 106, 608, 1239
PspGI CCWGG 3 cut(s) 106, 608, 1239
PspPI GGNCC 1 cut(s) 650
PspPPI RGGWCCY 1 cut(s) 650
PstNI CAGNNNCTG 1 cut(s) 1240
PsuI RGATCY 2 cut(s) 931, 961
RsaI GTAC 1 cut(s) 717
RsaNI GTAC 1 cut(s) 716
RseI CAYNNNNRTG 1 cut(s) 852
SacI GAGCTC 1 cut(s) 894
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 6 cut(s) 213, 344, 414, 1098, 1197, 1218
SatI GCNGC 3 cut(s) 726, 780, 1290
Sau3AI GATC 9 cut(s) 148, 361, 490, 534, 634, 710, 806, 931, 961
Sau96I GGNCC 1 cut(s) 650
SchI GAGTC 2 cut(s) 348, 637
ScrFI CCNGG 3 cut(s) 108, 610, 1241
SduI GDGCHC 1 cut(s) 894
SfaNI GCATC 3 cut(s) 127, 151, 834
SfcI CTRYAG 2 cut(s) 897, 1293
SinI GGWCC 1 cut(s) 650
SmiMI CAYNNNNRTG 1 cut(s) 852
SmlI CTYRAG 4 cut(s) 131, 405, 452, 977
SmoI CTYRAG 4 cut(s) 131, 405, 452, 977
SnaBI TACGTA 1 cut(s) 719
Sse9I AATT 5 cut(s) 657, 949, 971, 1063, 1118
SsiI CCGC 1 cut(s) 483
SspMI CTAG 5 cut(s) 338, 548, 647, 767, 1082
SstI GAGCTC 1 cut(s) 894
StyD4I CCNGG 3 cut(s) 106, 608, 1239
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 5 cut(s) 127, 349, 631, 673, 1059
TaiI ACGT 4 cut(s) 721, 1037, 1043, 1278
TaqI TCGA 1 cut(s) 446
TaqII GACCGA 1 cut(s) 723
TasI AATT 5 cut(s) 657, 949, 971, 1063, 1118
TfiI GAWTC 2 cut(s) 103, 386
Tru1I TTAA 6 cut(s) 213, 344, 414, 1098, 1197, 1218
Tru9I TTAA 6 cut(s) 213, 344, 414, 1098, 1197, 1218
TscAI CASTG 3 cut(s) 275, 284, 816
TseFI GTSAC 2 cut(s) 391, 871
TseI GCWGC 3 cut(s) 725, 779, 1289
Tsp45I GTSAC 2 cut(s) 391, 871
TspDTI ATGAA 5 cut(s) 132, 300, 1115, 1131, 1286
TspRI CASTG 3 cut(s) 275, 284, 816
VpaK11BI GGWCC 1 cut(s) 650
XapI RAATTY 4 cut(s) 657, 949, 971, 1118
XbaI TCTAGA 1 cut(s) 766
XceI RCATGY 1 cut(s) 853
XmaJI CCTAGG 1 cut(s) 1081
XmiI GTMKAC 1 cut(s) 296
XmnI GAANNNNTTC 3 cut(s) 1076, 1118, 1122
XspI CTAG 5 cut(s) 338, 548, 647, 767, 1082
ZraI GACGTC 1 cut(s) 1035
Zsp2I ATGCAT 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.