Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0008512

Physical Location & Seq

Genomic Coordinates Forward (+)

7085434 .. 7086881

Gene Structure 1448 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1085400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGGAAACGTAGTTCTCAGCGTAAGAATGCTGCGATGATGGATAGTGATGATGATAATAGTAGCGTGAGTTCGACGTCGACTATGCGCTCCGATCATATTTCGGTGTCTGTCAATGAAGATATGCAAGTGGATAAGGATAGTTTACTTGACCAAGCTGTAGATGCGTTGTATGAGAAGAGGGGTTCCACAAGAGAAAAAGCTTTGTTTGCCACTTTATTGCATCAGTGTCTGAATTGCATCAACAAGGGTTCGTCCAAAGAGATATGTTTGGTGTCTCATGTGATCGGACTATTGGCTTTGACTGTTGGATGTGGAGACAATGCTCATGAAATACTGGAAGAATCAGTACCTGTGATTTCACAGGTTTTCAAATCTGGATCTGAAGTCTCAAAAGACATCAGCGGTAGCTACGATATCATACTTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IFRD IFRD_C

Protein Analysis

144

Amino Acids

15.47

Weight (kDa)

4.96

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IFRD	PF05004	23 - 69	8.8e-06	Interferon-related developmental regulator (IFRD)
IFRD	PF05004	70 - 132	2.1e-14	Interferon-related developmental regulator (IFRD)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27760 AT1G27760 AT1G27760
fragaria_vesca	FvH4_2g33200 FvH4_2g33200 FvH4_2g33200
malus_domestica	MD08G1085400.v1.1 MD08G1085800.v1.1 MD15G1071000.v1.1
prunus_persica	Prupe.1G423700_v2.0.a1
pyrus_communis	pycom08g07050 pycom15g06680
rosa_chinensis	RchiOBHm_Chr6g0309471
rosa_laevigata	RLG00000010563
rosa_multiflora	Rmu_sc0007283.1_g000001 Rmu_sc0022500.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159380
rosa_rugosa	Rorug06G0372200
rosa_samantha	Rh6AG485400 Rh6BG494700 Rh6CG499700 Rh6DG485800
rosa_wichuraiana	Rw6G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	80
AciI	CCGC	1 cut(s)	405
AclWI	GGATC	1 cut(s)	388
AcuI	CTGAAG	1 cut(s)	405
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	1 cut(s)	351
AgsI	TTSAA	1 cut(s)	373
AloI	GAACNNNNNNTCC	1 cut(s)	30
AluBI	AGCT	3 cut(s)	158, 203, 411
AluI	AGCT	3 cut(s)	158, 203, 411
Alw26I	GTCTC	3 cut(s)	282, 312, 394
AlwI	GGATC	1 cut(s)	388
AlwNI	CAGNNNCTG	2 cut(s)	232, 353
ApeKI	GCWGC	1 cut(s)	32
AspLEI	GCGC	1 cut(s)	90
BarI	GAAGNNNNNNTAC	2 cut(s)	333, 365
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	1 cut(s)	34
BcoDI	GTCTC	3 cut(s)	282, 312, 394
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	187
BmsI	GCATC	3 cut(s)	154, 232, 249
BsaHI	GRCGYC	1 cut(s)	77
Bse1I	ACTGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	19
BsmAI	GTCTC	3 cut(s)	282, 312, 394
BsmI	GAATGC	1 cut(s)	34
Bsp143I	GATC	3 cut(s)	94, 285, 380
BspACI	CCGC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	31
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	388
BsrI	ACTGG	1 cut(s)	342
BssMI	GATC	3 cut(s)	94, 285, 380
BssNI	GRCGYC	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	77
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	317
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	97, 288, 383
BstMAI	GTCTC	3 cut(s)	282, 312, 394
BstMBI	GATC	3 cut(s)	94, 285, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 209
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BtgZI	GCGATG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	233
CaiI	CAGNNNCTG	2 cut(s)	232, 353
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	281, 329
CviJI	RGCY	4 cut(s)	158, 203, 299, 411
CviKI_1	RGCY	4 cut(s)	158, 203, 299, 411
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	3 cut(s)	96, 287, 382
DpnII	GATC	3 cut(s)	94, 285, 380
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	418
Eco57I	CTGAAG	1 cut(s)	405
EcoRV	GATATC	1 cut(s)	418
FaeI	CATG	2 cut(s)	284, 332
FaiI	YATR	8 cut(s)	86, 99, 125, 174, 268, 282, 330, 422
FatI	CATG	2 cut(s)	280, 328
FblI	GTMKAC	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	324
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	33
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	2 cut(s)	284, 332
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	1 cut(s)	201
HinfI	GANTC	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	81, 146
Hpy188I	TCNGA	4 cut(s)	94, 234, 290, 385
Hpy188III	TCNNGA	2 cut(s)	329, 378
Hpy8I	GTNNAC	2 cut(s)	81, 146
Hpy99I	CGWCG	2 cut(s)	79, 82
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	10, 77
HpyCH4V	TGCA	3 cut(s)	127, 223, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 209
HpyF3I	CTNAG	1 cut(s)	18
HpySE526I	ACGT	2 cut(s)	10, 77
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	284, 332
HspAI	GCGC	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	94, 285, 380
LmnI	GCTCC	1 cut(s)	95
LpnPI	CCDG	4 cut(s)	323, 350, 363, 366
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	3 cut(s)	154, 232, 249
MaeII	ACGT	2 cut(s)	10, 77
MalI	GATC	3 cut(s)	96, 287, 382
MboI	GATC	3 cut(s)	94, 285, 380
MboII	GAAGA	3 cut(s)	131, 190, 353
MflI	RGATCY	1 cut(s)	380
MluCI	AATT	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	405
Mva1269I	GAATGC	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	164, 209
NdeII	GATC	3 cut(s)	94, 285, 380
NlaIII	CATG	2 cut(s)	284, 332
NlaIV	GGNNCC	1 cut(s)	187
PagI	TCATGA	1 cut(s)	328
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	1 cut(s)	34
PspN4I	GGNNCC	1 cut(s)	187
PsrI	GAACNNNNNNTAC	2 cut(s)	55, 87
PstNI	CAGNNNCTG	2 cut(s)	232, 353
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SalI	GTCGAC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	3 cut(s)	94, 285, 380
SetI	ASST	7 cut(s)	13, 80, 160, 205, 355, 369, 413
SfaNI	GCATC	3 cut(s)	154, 232, 249
SfcI	CTRYAG	1 cut(s)	159
Sse9I	AATT	1 cut(s)	235
SsiI	CCGC	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	13, 80
TaqI	TCGA	2 cut(s)	74, 80
TasI	AATT	1 cut(s)	235
TfiI	GAWTC	1 cut(s)	344
TscAI	CASTG	1 cut(s)	233
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	132, 345
TspRI	CASTG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	80
ZraI	GACGTC	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.