FvH4_2g33200
ERF Family

Interferon-related developmental regulator

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
24960491 .. 24964243
3753 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g33200.t1

Sequence Viewer

Length: 1341 bp
ATGGGCAAGCGTAATAATCAACGTAAGAATGCGGCGGCGATGATGTTGGATAGCGATGACGATAATAGTAGCGTGAGTTCAACGTCGACTATGCGGTCTGACCTTATGGTGGCGCCGGGGAATGATGAAATGCATGTCGAAAAGGATAGCTTGCTTGACCAGGCTCTCGATGCTCTCTTTGAGAAGAGGGGTTCCACTAGGGAAAAAGCTCTGGCTTCAATTCTGGAAGCGTTTAATAGCAGCTTGCAGCATGAGTTTGTGGAAAAGAAATTTGCCACTTTATTGCATCAGTGTTTGAATTGCATCAAAAAGGGTTCGTCCAGAGAGATATGCTTGGCTTCTCATGTGATTGGATTACTGGCTTTGACTGTTGGATGTGGGGACAATGCTAATGAAATGCTTGAAGAATCCTTACCTGTAATTTCACAGGCTTTCAAATCTGGATCTGAATCCACAAAGACAATAGCGTTGCTGGAGTGTTTAGCTATTATCACGTTCGTTGGCGGTAATGACCCAGAGCAAACAGAAAAATCAATGCAAGTTATGTGGCAAGTGGTTCATCCAAAACTGAAATCAAATGTAGTTGCAGTTAAACCTTCAGCTGCCGTAATAACCACGATGGTGTTTGCATGGTCTTTTCTTCTTACAACTGTAGATGGATGGAAACTTAATCCCAAGGATTGGCAAGAGTCCATATCATACTTGTCTGGTCTTCTGGACAAGGATGATCGCTCTGTGCGGATAGCCGCTGGCGAAGCTCTGGCGTTAATATTTGAATTAGGAAGCTTAGAGAAGTTCTCCAGTAGCACAAAAAGTTCAGATGATGGCTCAACTGAGGATGGAAATAAGCCTCGAGATTATGTACATATACAAGGACTGAAAGCAAAAATTATTAATCAAGCCAGAGACCTTGCAGCTGAGGCTGGTGGCAGAAGTTCGGCTAAGAAAGATCTTACCAACCAGAGGAATATGTTTCGAGATATCTTGGAGTATTTTGAGGATGGTTATTCCCCTGAAATTTCAATAAAGATTGGTGGTGATTCACTACAGACATCAACATGGTCGCAGCTCATACAGTTGAACTTTTTGAAGCACTTCCTTGGAGGAGGGTTTATAAAGCACATGCAGGAAAATGAACTCCTTCAGGATGTCTTAGGGTTCACTCCAAAGAAAAAGAATCTGGATTCCGAAAGTCGTCTATCTGGTGGTGAAAAGAGAATGTTCAGGTCACCAAACTCAGCTCTCAACAAAGCAAGGACCCAGCAACTTAATAAGCAGAGGATGCTATCAGCGGGTAAAAATATTGGCCAGTTTGCAGCCAACGTGGGGGATGATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

49.0

Weight (kDa)

6.13

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 25 - 333 7.6e-93 Interferon-related developmental regulator (IFRD)
IFRD_C PF04836 378 - 430 2.2e-15 Interferon-related protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1115
AasI GACNNNNNNGTC 1 cut(s) 94
AccB1I GGYRCC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 681
AccI GTMKAC 1 cut(s) 86
AciI CCGC 7 cut(s) 32, 35, 94, 504, 739, 747, 1292
AclWI GGATC 1 cut(s) 451
AcoI YGGCCR 1 cut(s) 1306
AcsI RAATTY 2 cut(s) 269, 1017
AcuI CTGAAG 2 cut(s) 582, 1127
AcyI GRCGYC 1 cut(s) 113
AfaI GTAC 1 cut(s) 864
AfiI CCNNNNNNNGG 4 cut(s) 109, 681, 963, 1326
AgsI TTSAA 9 cut(s) 81, 219, 298, 404, 436, 776, 1023, 1081, 1090
AjnI CCWGG 1 cut(s) 159
AleI CACNNNNGTG 1 cut(s) 620
Alw26I GTCTC 1 cut(s) 900
AlwI GGATC 1 cut(s) 451
Ama87I CYCGRG 1 cut(s) 852
AoxI GGCC 1 cut(s) 1306
ApeKI GCWGC 6 cut(s) 240, 247, 602, 914, 1066, 1316
ApoI RAATTY 2 cut(s) 269, 1017
AseI ATTAAT 1 cut(s) 894
Asp700I GAANNNNTTC 2 cut(s) 1094, 1140
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 1257
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 3 cut(s) 1049, 1220, 1221
AvaI CYCGRG 1 cut(s) 852
AvaII GGWCC 1 cut(s) 1257
BalI TGGCCA 1 cut(s) 1308
BanI GGYRCC 1 cut(s) 112
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BbsI GAAGAC 1 cut(s) 704
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 6 cut(s) 252, 259, 589, 926, 1078, 1328
BccI CCATC 6 cut(s) 613, 650, 654, 818, 833, 995
BceAI ACGGC 1 cut(s) 590
BciT130I CCWGG 1 cut(s) 161
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 900
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 2 cut(s) 651, 1046
BfoI RGCGCY 1 cut(s) 116
BglII AGATCT 1 cut(s) 949
BisI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 915, 1067, 1317
BlsI GCNGC 9 cut(s) 34, 37, 242, 249, 604, 748, 916, 1068, 1318
Bme1390I CCNGG 2 cut(s) 117, 161
Bme18I GGWCC 1 cut(s) 1257
BmeT110I CYCGRG 1 cut(s) 852
BmgT120I GGNCC 1 cut(s) 1257
BmiI GGNNCC 3 cut(s) 114, 193, 1259
BmrFI CCNGG 2 cut(s) 117, 161
BmsI GCATC 5 cut(s) 160, 295, 312, 1272, 1324
BpiI GAAGAC 1 cut(s) 704
BplI GAGNNNNNCTC 2 cut(s) 782, 814
BpmI CTGGAG 2 cut(s) 494, 784
Bpu10I CCTNAGC 1 cut(s) 918
BpuMI CCSGG 1 cut(s) 117
BsaBI GATNNNNATC 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 113
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 3 cut(s) 116, 675, 1099
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 681, 963, 1326
Bse1I ACTGG 3 cut(s) 363, 801, 1309
Bse8I GATNNNNATC 1 cut(s) 448
BseBI CCWGG 1 cut(s) 161
BseDI CCNNGG 3 cut(s) 116, 675, 1099
BseGI GGATG 9 cut(s) 380, 559, 665, 730, 844, 1006, 1153, 1287, 1336
BseJI GATNNNNATC 1 cut(s) 448
BseLI CCNNNNNNNGG 4 cut(s) 109, 681, 963, 1326
BseMII CTCAG 3 cut(s) 825, 909, 1251
BseNI ACTGG 3 cut(s) 363, 801, 1309
BseRI GAGGAG 1 cut(s) 1119
BseXI GCAGC 6 cut(s) 252, 259, 589, 926, 1078, 1328
BseYI CCCAGC 1 cut(s) 1260
BshFI GGCC 1 cut(s) 1308
BshNI GGYRCC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 852
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 4 cut(s) 109, 681, 963, 1326
BsmAI GTCTC 1 cut(s) 900
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 1308
Bso31I GGTCTC 1 cut(s) 900
BsoBI CYCGRG 1 cut(s) 852
Bsp1407I TGTACA 1 cut(s) 862
Bsp143I GATC 3 cut(s) 443, 727, 949
BspACI CCGC 7 cut(s) 32, 35, 94, 504, 739, 747, 1292
BspANI GGCC 1 cut(s) 1308
BspCNI CTCAG 3 cut(s) 826, 910, 1250
BspLI GGNNCC 3 cut(s) 114, 193, 1259
BspPI GGATC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 112
BspTNI GGTCTC 1 cut(s) 900
BsrGI TGTACA 1 cut(s) 862
BsrI ACTGG 3 cut(s) 363, 801, 1309
BssECI CCNNGG 3 cut(s) 116, 675, 1099
BssMI GATC 3 cut(s) 443, 727, 949
BssNI GRCGYC 1 cut(s) 113
BssT1I CCWWGG 2 cut(s) 675, 1099
Bst2UI CCWGG 1 cut(s) 161
Bst4CI ACNGT 3 cut(s) 370, 652, 1077
Bst6I CTCTTC 1 cut(s) 179
BstACI GRCGYC 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 1282
BstAUI TGTACA 1 cut(s) 862
BstC8I GCNNGC 4 cut(s) 8, 152, 245, 751
BstDEI CTNAG 6 cut(s) 787, 834, 918, 942, 1153, 1237
BstEII GGTNACC 1 cut(s) 1227
BstF5I GGATG 9 cut(s) 380, 559, 665, 730, 844, 1006, 1153, 1287, 1336
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 3 cut(s) 446, 730, 952
BstMAI GTCTC 1 cut(s) 900
BstMBI GATC 3 cut(s) 443, 727, 949
BstMWI GCNNNNNNNGC 4 cut(s) 170, 755, 920, 1282
BstNI CCWGG 1 cut(s) 161
BstNSI RCATGY 2 cut(s) 137, 1126
BstPI GGTNACC 1 cut(s) 1227
BstSCI CCNGG 2 cut(s) 115, 159
BstSFI CTRYAG 2 cut(s) 651, 1046
BstV1I GCAGC 6 cut(s) 252, 259, 589, 926, 1078, 1328
BstV2I GAAGAC 1 cut(s) 704
BstX2I RGATCY 2 cut(s) 443, 949
BstYI RGATCY 2 cut(s) 443, 949
BsuRI GGCC 1 cut(s) 1308
BtgZI GCGATG 2 cut(s) 53, 69
BtsCI GGATG 9 cut(s) 380, 559, 665, 730, 844, 1006, 1153, 1287, 1336
BtsIMutI CAGTG 1 cut(s) 296
Cac8I GCNNGC 4 cut(s) 8, 152, 245, 751
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 1257
Csp6I GTAC 1 cut(s) 863
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CviAII CATG 6 cut(s) 134, 251, 344, 630, 1059, 1123
CviQI GTAC 1 cut(s) 863
DdeI CTNAG 6 cut(s) 787, 834, 918, 942, 1153, 1237
DinI GGCGCC 1 cut(s) 114
DpnI GATC 3 cut(s) 445, 729, 951
DpnII GATC 3 cut(s) 443, 727, 949
DrdI GACNNNNNNGTC 1 cut(s) 94
DseDI GACNNNNNNGTC 1 cut(s) 94
EaeI YGGCCR 1 cut(s) 1306
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 2 cut(s) 675, 1099
Eco31I GGTCTC 1 cut(s) 900
Eco32I GATATC 1 cut(s) 982
Eco47I GGWCC 1 cut(s) 1257
Eco57I CTGAAG 2 cut(s) 582, 1127
Eco88I CYCGRG 1 cut(s) 852
Eco91I GGTNACC 1 cut(s) 1227
EcoO109I RGGNCCY 1 cut(s) 1257
EcoO65I GGTNACC 1 cut(s) 1227
EcoRII CCWGG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 982
EcoT14I CCWWGG 2 cut(s) 675, 1099
EcoT22I ATGCAT 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 114
EheI GGCGCC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 675, 1099
FaeI CATG 6 cut(s) 137, 254, 347, 633, 1062, 1126
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 395
FatI CATG 6 cut(s) 133, 250, 343, 629, 1058, 1122
FauI CCCGC 1 cut(s) 1285
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 915, 1067, 1317
FokI GGATG 8 cut(s) 387, 546, 672, 737, 851, 1013, 1160, 1294
Fsp4HI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 915, 1067, 1317
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 114
GluI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 915, 1067, 1317
GsaI CCCAGC 1 cut(s) 1264
GsuI CTGGAG 2 cut(s) 494, 784
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 1308
HapII CCGG 1 cut(s) 116
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 113
Hin1II CATG 6 cut(s) 137, 254, 347, 633, 1062, 1126
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 1 cut(s) 87
HindII GTYRAC 1 cut(s) 87
HindIII AAGCTT 1 cut(s) 784
HinfI GANTC 6 cut(s) 407, 449, 689, 1040, 1177, 1184
HpaII CCGG 1 cut(s) 116
HphI GGTGA 3 cut(s) 1049, 1220, 1221
Hpy166II GTNNAC 2 cut(s) 87, 1161
Hpy188I TCNGA 4 cut(s) 100, 448, 820, 1189
Hpy188III TCNNGA 9 cut(s) 167, 224, 321, 441, 716, 854, 977, 1145, 1181
Hpy8I GTNNAC 2 cut(s) 87, 1161
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 606, 1151
HpyCH4III ACNGT 3 cut(s) 370, 652, 1077
HpyCH4IV ACGT 4 cut(s) 22, 83, 494, 1323
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 755, 920, 1282
HpyF3I CTNAG 6 cut(s) 787, 834, 918, 942, 1153, 1237
HpySE526I ACGT 4 cut(s) 22, 83, 494, 1323
Hsp92I GRCGYC 1 cut(s) 113
Hsp92II CATG 6 cut(s) 137, 254, 347, 633, 1062, 1126
HspAI GCGC 1 cut(s) 113
KasI GGCGCC 1 cut(s) 112
Kzo9I GATC 3 cut(s) 443, 727, 949
Lsp1109I GCAGC 6 cut(s) 252, 259, 589, 926, 1078, 1328
LweI GCATC 5 cut(s) 160, 295, 312, 1272, 1324
MaeI CTAG 1 cut(s) 198
MaeII ACGT 4 cut(s) 22, 83, 494, 1323
MaeIII GTNAC 1 cut(s) 1227
MalI GATC 3 cut(s) 445, 729, 951
MboI GATC 3 cut(s) 443, 727, 949
MboII GAAGA 4 cut(s) 196, 416, 632, 704
MflI RGATCY 2 cut(s) 443, 949
MlsI TGGCCA 1 cut(s) 1308
MluCI AATT 7 cut(s) 219, 269, 298, 420, 776, 888, 1017
MluNI TGGCCA 1 cut(s) 1308
Mly113I GGCGCC 1 cut(s) 113
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 2 cut(s) 27, 352
MnlI CCTC 9 cut(s) 180, 829, 861, 913, 957, 991, 1097, 1100, 1272
Mox20I TGGCCA 1 cut(s) 1308
Mph1103I ATGCAT 1 cut(s) 135
MroXI GAANNNNTTC 2 cut(s) 1094, 1140
MscI TGGCCA 1 cut(s) 1308
MseI TTAA 6 cut(s) 234, 591, 669, 767, 894, 1269
MslI CAYNNNNRTG 2 cut(s) 620, 1057
Msp20I TGGCCA 1 cut(s) 1308
MspA1I CMGCKG 4 cut(s) 602, 749, 917, 1292
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 117, 161
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 161
MwoI GCNNNNNNNGC 4 cut(s) 170, 755, 920, 1282
NarI GGCGCC 1 cut(s) 113
NciI CCSGG 1 cut(s) 117
NdeII GATC 3 cut(s) 443, 727, 949
NlaIII CATG 6 cut(s) 137, 254, 347, 633, 1062, 1126
NlaIV GGNNCC 3 cut(s) 114, 193, 1259
NmuCI GTSAC 1 cut(s) 1227
NsiI ATGCAT 1 cut(s) 135
NspI RCATGY 2 cut(s) 137, 1126
OliI CACNNNNGTG 1 cut(s) 620
PaeR7I CTCGAG 1 cut(s) 852
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 2 cut(s) 1094, 1140
PfeI GAWTC 5 cut(s) 407, 449, 1040, 1177, 1184
PflMI CCANNNNNTGG 1 cut(s) 681
PkrI GCNGC 9 cut(s) 34, 37, 242, 249, 604, 748, 916, 1068, 1318
PleI GAGTC 1 cut(s) 697
PluTI GGCGCC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 697
PpuMI RGGWCCY 1 cut(s) 1257
PshBI ATTAAT 1 cut(s) 894
PsiI TTATAA 1 cut(s) 1115
Psp5II RGGWCCY 1 cut(s) 1257
Psp6I CCWGG 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 1227
PspFI CCCAGC 1 cut(s) 1260
PspGI CCWGG 1 cut(s) 159
PspN4I GGNNCC 3 cut(s) 114, 193, 1259
PspPI GGNCC 1 cut(s) 1257
PspPPI RGGWCCY 1 cut(s) 1257
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PsuI RGATCY 2 cut(s) 443, 949
PvuII CAGCTG 2 cut(s) 602, 917
RsaI GTAC 1 cut(s) 864
RsaNI GTAC 1 cut(s) 863
RseI CAYNNNNRTG 2 cut(s) 620, 1057
SalI GTCGAC 1 cut(s) 85
SaqAI TTAA 6 cut(s) 234, 591, 669, 767, 894, 1269
SatI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 915, 1067, 1317
Sau3AI GATC 3 cut(s) 443, 727, 949
Sau96I GGNCC 1 cut(s) 1257
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 2 cut(s) 117, 161
SfaNI GCATC 5 cut(s) 160, 295, 312, 1272, 1324
SfcI CTRYAG 2 cut(s) 651, 1046
SfoI GGCGCC 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 852
SinI GGWCC 1 cut(s) 1257
SlaI CTCGAG 1 cut(s) 852
SmiMI CAYNNNNRTG 2 cut(s) 620, 1057
SmlI CTYRAG 1 cut(s) 852
SmoI CTYRAG 1 cut(s) 852
Sse9I AATT 7 cut(s) 219, 269, 298, 420, 776, 888, 1017
SsiI CCGC 7 cut(s) 32, 35, 94, 504, 739, 747, 1292
SspDI GGCGCC 1 cut(s) 112
SspI AATATT 2 cut(s) 771, 1303
SspMI CTAG 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 115, 159
StyI CCWWGG 2 cut(s) 675, 1099
TaaI ACNGT 3 cut(s) 370, 652, 1077
TaiI ACGT 4 cut(s) 25, 86, 497, 1326
TaqI TCGA 5 cut(s) 86, 138, 168, 853, 976
TasI AATT 7 cut(s) 219, 269, 298, 420, 776, 888, 1017
TatI WGTACW 1 cut(s) 862
TauI GCSGC 3 cut(s) 35, 38, 749
TfiI GAWTC 5 cut(s) 407, 449, 1040, 1177, 1184
Tru1I TTAA 6 cut(s) 234, 591, 669, 767, 894, 1269
Tru9I TTAA 6 cut(s) 234, 591, 669, 767, 894, 1269
TscAI CASTG 1 cut(s) 296
TseFI GTSAC 1 cut(s) 1227
TseI GCWGC 6 cut(s) 240, 247, 602, 914, 1066, 1316
Tsp45I GTSAC 1 cut(s) 1227
TspDTI ATGAA 4 cut(s) 141, 408, 548, 1149
TspRI CASTG 1 cut(s) 296
Van91I CCANNNNNTGG 1 cut(s) 681
VpaK11BI GGWCC 1 cut(s) 1257
VspI ATTAAT 1 cut(s) 894
XapI RAATTY 2 cut(s) 269, 1017
XceI RCATGY 2 cut(s) 137, 1126
XhoI CTCGAG 1 cut(s) 852
XmiI GTMKAC 1 cut(s) 86
XmnI GAANNNNTTC 2 cut(s) 1094, 1140
XspI CTAG 1 cut(s) 198
Zsp2I ATGCAT 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.