pycom15g06680
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0008512
Physical Location & Seq
Forward (+)
4103501 .. 4106532
3032 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g06680.2

Sequence Viewer

Length: 1287 bp
ATGGGGAAACGTAGTTCTCAGCGTAAGAATGCTGCGATGATGGACAGCGATGATGATAATAGTAGCATGAGTTCAACGTCAACTATGCGCTCTGATCATATATCGGTGTCTGTGAATGAAGATATGCAAGTGGATAGGGATAGTTTACTCGACCAAGCTGTAGATGCTTTGTATGAGAAGAGGGGTTCCACAAGAGAAAAAGCTTTGTCAGCAATTATTGACGCGTTTAATAGCAACTTGCAACATCAGTTTGTGGAAAAGAAGTTTGCAACATTATTGCATCAGTGTCTGAATTGCATCAAAAAGGGTTCCTCAAAAGAGATATGTTTGGCGTCTCATGTGATCGGACTATTGGCTTTGACTGTTGGATGTGGAGACAATGCTCAGGAAATACTGGAAGAATCAGTACCTGTGATTTCACAGGCTTTCAAATCAGGATCTGAAGTTTCAAAGACATCAGCGTTACTGGAGTGTTTAGCTATTATCACTTTTGTTGGTGGTAGTGACCCAGAGCAAACAGAAAAGTCAATGCAAATTATGTGGCAAGTAGTTCATCCAAAACAGAGTTCCAATGTGATTGCAGTTAAACTTTCAGCAGCAGTAATAACCACCATGGTGTCTGCGTGGTCCTTTCTTCTTACAACTGTAGAGGGGTGGAATCTTAATCCGAAAGACTGGCAAGAGTCCATAACATACTTATCTAGTCTGCTAGATAAGGATGACCGATCTATACGTATAGCTGCTGGTGAAGCTTTGGCTTTAATTTTTGAGATTGGAAGTTTAGAGAAGTTCACTGCTGGCACTAAAACATCAAGTGACAGCTCAACTGAAATAGGAAACAAACCTCGGGAATATGTACATATACAAGGATTGAAAGCGAAGATTATTAATCAAGCCAGAAACCTCTCAGCCGAAGCAGGTGGCAAAAGTTCTGCTAAAAAAGATCTTAGTAGTCAGCGGAACACGTTTCGGGATATCTTGGAATATTTTGAGGATGGTTATTCTCCTGAAATTTCGATAAAGATTGGTGGTGAATCACTACAGACATCAACGTGGTCGCAGATGATACAGGAAAATGAACTCCTCCAGGATGTTCTTGGCTTCAATCCAAAGAAAAAGAATCTTTTGGATTCTGAACATCGTCTATCTGGTAGTGAAAAGAGGATGTTTAAGTCACCGAACTCAGTACAAAACAAAGCCAGGACCCAGCTGCTTAACAAGCAGCGAATGTTCTCCGAGGGTAAAAATATCGGCCGATTTGCAGCTAATTTGGGGGACGATGCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

429

Amino Acids

47.09

Weight (kDa)

6.06

Isoelectric Point (pI)

44.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 908
Acc36I ACCTGC 1 cut(s) 908
AccII CGCG 1 cut(s) 224
AciI CCGC 1 cut(s) 958
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 1 cut(s) 1252
AcsI RAATTY 1 cut(s) 1011
AcuI CTGAAG 1 cut(s) 462
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 3 cut(s) 408, 858, 1188
AflIII ACRYGT 2 cut(s) 222, 963
AgsI TTSAA 5 cut(s) 75, 430, 450, 874, 1105
AjnI CCWGG 2 cut(s) 1086, 1199
AjuI GAANNNNNNNTTGG 2 cut(s) 550, 582
AleI CACNNNNGTG 1 cut(s) 614
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 8 cut(s) 158, 203, 479, 740, 752, 822, 1210, 1265
AluI AGCT 8 cut(s) 158, 203, 479, 740, 752, 822, 1210, 1265
Alw26I GTCTC 2 cut(s) 339, 369
AlwI GGATC 1 cut(s) 445
AlwNI CAGNNNCTG 3 cut(s) 289, 410, 440
Ama87I CYCGRG 1 cut(s) 846
AoxI GGCC 1 cut(s) 1252
ApeKI GCWGC 6 cut(s) 32, 596, 740, 1210, 1222, 1262
ApoI RAATTY 1 cut(s) 1011
AseI ATTAAT 1 cut(s) 888
AspLEI GCGC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 627, 1203
AsuHPI GGTGA 3 cut(s) 758, 1043, 1167
AvaI CYCGRG 1 cut(s) 846
AvaII GGWCC 2 cut(s) 627, 1203
BarI GAAGNNNNNNTAC 2 cut(s) 390, 422
BbvI GCAGC 6 cut(s) 19, 608, 727, 1197, 1234, 1274
BccI CCATC 2 cut(s) 34, 989
BciT130I CCWGG 2 cut(s) 1088, 1201
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 339, 369
BfaI CTAG 2 cut(s) 702, 710
BfmI CTRYAG 3 cut(s) 159, 645, 1040
BfuAI ACCTGC 1 cut(s) 908
BglII AGATCT 1 cut(s) 943
BisI GCNGC 6 cut(s) 33, 597, 741, 1211, 1223, 1263
BlsI GCNGC 6 cut(s) 34, 598, 742, 1212, 1224, 1264
Bme1390I CCNGG 2 cut(s) 1088, 1201
Bme18I GGWCC 2 cut(s) 627, 1203
BmeT110I CYCGRG 1 cut(s) 846
BmgT120I GGNCC 2 cut(s) 627, 1203
BmiI GGNNCC 3 cut(s) 187, 310, 1205
BmrFI CCNGG 2 cut(s) 1088, 1201
BmsI GCATC 4 cut(s) 154, 289, 306, 1270
BpmI CTGGAG 2 cut(s) 488, 1070
Bpu10I CCTNAGC 1 cut(s) 384
BsaAI YACGTR 1 cut(s) 734
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 3 cut(s) 612, 845, 1236
Bse1I ACTGG 3 cut(s) 399, 471, 680
BseBI CCWGG 2 cut(s) 1088, 1201
BseDI CCNNGG 3 cut(s) 612, 845, 1236
BseGI GGATG 6 cut(s) 374, 553, 724, 1000, 1096, 1170
BseMII CTCAG 4 cut(s) 32, 398, 921, 1197
BseNI ACTGG 3 cut(s) 399, 471, 680
BseRI GAGGAG 1 cut(s) 1073
BseX3I CGGCCG 1 cut(s) 1252
BseXI GCAGC 6 cut(s) 19, 608, 727, 1197, 1234, 1274
BseYI CCCAGC 1 cut(s) 1206
Bsh1236I CGCG 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 1255
BshFI GGCC 1 cut(s) 1254
BsiEI CGRYCG 1 cut(s) 1255
BsiHKCI CYCGRG 1 cut(s) 846
BsmAI GTCTC 2 cut(s) 339, 369
BsmBI CGTCTC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 1254
BsoBI CYCGRG 1 cut(s) 846
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 5 cut(s) 94, 342, 437, 725, 943
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 1 cut(s) 958
BspANI GGCC 1 cut(s) 1254
BspCNI CTCAG 4 cut(s) 31, 397, 920, 1196
BspFNI CGCG 1 cut(s) 224
BspLI GGNNCC 3 cut(s) 187, 310, 1205
BspMI ACCTGC 1 cut(s) 908
BspPI GGATC 1 cut(s) 445
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 3 cut(s) 399, 471, 680
BssECI CCNNGG 3 cut(s) 612, 845, 1236
BssMI GATC 5 cut(s) 94, 342, 437, 725, 943
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 612
Bst2UI CCWGG 2 cut(s) 1088, 1201
Bst4CI ACNGT 2 cut(s) 364, 646
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 856
BstBAI YACGTR 1 cut(s) 734
BstC8I GCNNGC 1 cut(s) 799
BstDEI CTNAG 5 cut(s) 18, 384, 907, 947, 1183
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 6 cut(s) 374, 553, 724, 1000, 1096, 1170
BstFNI CGCG 1 cut(s) 224
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 5 cut(s) 97, 345, 440, 728, 946
BstMAI GTCTC 2 cut(s) 339, 369
BstMBI GATC 5 cut(s) 94, 342, 437, 725, 943
BstMCI CGRYCG 1 cut(s) 1255
BstMWI GCNNNNNNNGC 4 cut(s) 164, 209, 749, 1219
BstNI CCWGG 2 cut(s) 1088, 1201
BstSCI CCNGG 2 cut(s) 1086, 1199
BstSFI CTRYAG 3 cut(s) 159, 645, 1040
BstSNI TACGTA 1 cut(s) 734
BstUI CGCG 1 cut(s) 224
BstV1I GCAGC 6 cut(s) 19, 608, 727, 1197, 1234, 1274
BstX2I RGATCY 2 cut(s) 437, 943
BstYI RGATCY 2 cut(s) 437, 943
BstZI CGGCCG 1 cut(s) 1252
BsuRI GGCC 1 cut(s) 1254
BtgI CCRYGG 1 cut(s) 612
BtgZI GCGATG 2 cut(s) 50, 63
BtsCI GGATG 6 cut(s) 374, 553, 724, 1000, 1096, 1170
BtsI GCAGTG 1 cut(s) 792
BtsIMutI CAGTG 2 cut(s) 290, 792
BveI ACCTGC 1 cut(s) 908
Cac8I GCNNGC 1 cut(s) 799
CaiI CAGNNNCTG 3 cut(s) 289, 410, 440
CfoI GCGC 1 cut(s) 90
Cfr13I GGNCC 2 cut(s) 627, 1203
CseI GACGC 2 cut(s) 230, 321
Csp6I GTAC 3 cut(s) 407, 857, 1187
CspCI CAANNNNNGTGG 2 cut(s) 521, 556
CviAII CATG 3 cut(s) 67, 338, 613
CviQI GTAC 3 cut(s) 407, 857, 1187
DdeI CTNAG 5 cut(s) 18, 384, 907, 947, 1183
DpnI GATC 5 cut(s) 96, 344, 439, 727, 945
DpnII GATC 5 cut(s) 94, 342, 437, 725, 943
EaeI YGGCCR 1 cut(s) 1252
EagI CGGCCG 1 cut(s) 1252
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
EclXI CGGCCG 1 cut(s) 1252
Eco105I TACGTA 1 cut(s) 734
Eco130I CCWWGG 1 cut(s) 612
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 2 cut(s) 627, 1203
Eco52I CGGCCG 1 cut(s) 1252
Eco57I CTGAAG 1 cut(s) 462
Eco88I CYCGRG 1 cut(s) 846
EcoO109I RGGNCCY 1 cut(s) 1203
EcoRII CCWGG 2 cut(s) 1086, 1199
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 3 cut(s) 70, 341, 616
FatI CATG 3 cut(s) 66, 337, 612
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 6 cut(s) 33, 597, 741, 1211, 1223, 1263
FokI GGATG 6 cut(s) 381, 540, 731, 1007, 1103, 1177
Fsp4HI GCNGC 6 cut(s) 33, 597, 741, 1211, 1223, 1263
FspBI CTAG 2 cut(s) 702, 710
GlaI GCGC 1 cut(s) 89
GluI GCNGC 6 cut(s) 33, 597, 741, 1211, 1223, 1263
GsaI CCCAGC 1 cut(s) 1210
GsuI CTGGAG 2 cut(s) 488, 1070
HaeIII GGCC 1 cut(s) 1254
HgaI GACGC 2 cut(s) 230, 321
HhaI GCGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 3 cut(s) 70, 341, 616
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 2 cut(s) 201, 750
HinfI GANTC 6 cut(s) 401, 658, 683, 1034, 1120, 1130
HphI GGTGA 3 cut(s) 758, 1043, 1167
Hpy166II GTNNAC 3 cut(s) 81, 146, 792
Hpy188I TCNGA 7 cut(s) 94, 291, 347, 442, 669, 1135, 1237
Hpy188III TCNNGA 5 cut(s) 386, 435, 848, 971, 1007
Hpy8I GTNNAC 3 cut(s) 81, 146, 792
HpyCH4III ACNGT 2 cut(s) 364, 646
HpyCH4IV ACGT 5 cut(s) 10, 77, 733, 965, 1052
HpyCH4V TGCA 8 cut(s) 127, 241, 269, 280, 297, 532, 581, 1262
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 209, 749, 1219
HpyF3I CTNAG 5 cut(s) 18, 384, 907, 947, 1183
HpySE526I ACGT 5 cut(s) 10, 77, 733, 965, 1052
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 3 cut(s) 70, 341, 616
HspAI GCGC 1 cut(s) 88
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 5 cut(s) 94, 342, 437, 725, 943
Lsp1109I GCAGC 6 cut(s) 19, 608, 727, 1197, 1234, 1274
LweI GCATC 4 cut(s) 154, 289, 306, 1270
MaeI CTAG 2 cut(s) 702, 710
MaeII ACGT 5 cut(s) 10, 77, 733, 965, 1052
MaeIII GTNAC 4 cut(s) 462, 503, 815, 1173
MalI GATC 5 cut(s) 96, 344, 439, 727, 945
MboI GATC 5 cut(s) 94, 342, 437, 725, 943
MboII GAAGA 5 cut(s) 131, 190, 410, 626, 892
MflI RGATCY 2 cut(s) 437, 943
MluCI AATT 6 cut(s) 213, 292, 534, 762, 1011, 1267
MluI ACGCGT 1 cut(s) 222
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 1 cut(s) 346
MnlI CCTC 9 cut(s) 174, 322, 643, 855, 914, 985, 1094, 1155, 1231
MseI TTAA 7 cut(s) 228, 585, 663, 761, 888, 1170, 1215
MslI CAYNNNNRTG 2 cut(s) 614, 1051
MspA1I CMGCKG 2 cut(s) 958, 1210
MspR9I CCNGG 2 cut(s) 1088, 1201
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 2 cut(s) 1088, 1201
MvnI CGCG 1 cut(s) 224
MwoI GCNNNNNNNGC 4 cut(s) 164, 209, 749, 1219
NcoI CCATGG 1 cut(s) 612
NdeII GATC 5 cut(s) 94, 342, 437, 725, 943
NlaIII CATG 3 cut(s) 70, 341, 616
NlaIV GGNNCC 3 cut(s) 187, 310, 1205
NmuCI GTSAC 3 cut(s) 503, 815, 1173
OliI CACNNNNGTG 1 cut(s) 614
PaqCI CACCTGC 1 cut(s) 908
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 5 cut(s) 401, 658, 1034, 1120, 1130
PfoI TCCNGGA 1 cut(s) 1086
PkrI GCNGC 6 cut(s) 34, 598, 742, 1212, 1224, 1264
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
Ppu21I YACGTR 1 cut(s) 734
PpuMI RGGWCCY 1 cut(s) 1203
PshBI ATTAAT 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 1203
Psp6I CCWGG 2 cut(s) 1086, 1199
PspFI CCCAGC 1 cut(s) 1206
PspGI CCWGG 2 cut(s) 1086, 1199
PspN4I GGNNCC 3 cut(s) 187, 310, 1205
PspPI GGNCC 2 cut(s) 627, 1203
PspPPI RGGWCCY 1 cut(s) 1203
PsrI GAACNNNNNNTAC 2 cut(s) 55, 87
PstNI CAGNNNCTG 3 cut(s) 289, 410, 440
PsuI RGATCY 2 cut(s) 437, 943
PvuII CAGCTG 1 cut(s) 1210
RsaI GTAC 3 cut(s) 408, 858, 1188
RsaNI GTAC 3 cut(s) 407, 857, 1187
RseI CAYNNNNRTG 2 cut(s) 614, 1051
SaqAI TTAA 7 cut(s) 228, 585, 663, 761, 888, 1170, 1215
SatI GCNGC 6 cut(s) 33, 597, 741, 1211, 1223, 1263
Sau3AI GATC 5 cut(s) 94, 342, 437, 725, 943
Sau96I GGNCC 2 cut(s) 627, 1203
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 2 cut(s) 1088, 1201
SfaNI GCATC 4 cut(s) 154, 289, 306, 1270
SfcI CTRYAG 3 cut(s) 159, 645, 1040
SinI GGWCC 2 cut(s) 627, 1203
SmiMI CAYNNNNRTG 2 cut(s) 614, 1051
SnaBI TACGTA 1 cut(s) 734
Sse9I AATT 6 cut(s) 213, 292, 534, 762, 1011, 1267
SsiI CCGC 1 cut(s) 958
SspI AATATT 1 cut(s) 986
SspMI CTAG 2 cut(s) 702, 710
StyD4I CCNGG 2 cut(s) 1086, 1199
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 2 cut(s) 364, 646
TaiI ACGT 5 cut(s) 13, 80, 736, 968, 1055
TaqI TCGA 2 cut(s) 150, 1016
TaqII GACCGA 1 cut(s) 738
TasI AATT 6 cut(s) 213, 292, 534, 762, 1011, 1267
TatI WGTACW 2 cut(s) 856, 1186
TfiI GAWTC 5 cut(s) 401, 658, 1034, 1120, 1130
Tru1I TTAA 7 cut(s) 228, 585, 663, 761, 888, 1170, 1215
Tru9I TTAA 7 cut(s) 228, 585, 663, 761, 888, 1170, 1215
TscAI CASTG 2 cut(s) 290, 799
TseFI GTSAC 3 cut(s) 503, 815, 1173
TseI GCWGC 6 cut(s) 32, 596, 740, 1210, 1222, 1262
Tsp45I GTSAC 3 cut(s) 503, 815, 1173
TspDTI ATGAA 3 cut(s) 132, 542, 1092
TspRI CASTG 2 cut(s) 290, 799
VpaK11BI GGWCC 2 cut(s) 627, 1203
VspI ATTAAT 1 cut(s) 888
XapI RAATTY 1 cut(s) 1011
XcmI CCANNNNNNNNNTGG 1 cut(s) 1094
XspI CTAG 2 cut(s) 702, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.