Prupe.1G423700_v2.0.a1
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008512
Physical Location & Seq
Forward (+)
36530184 .. 36533750
3567 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G423700.1

Sequence Viewer

Length: 1338 bp
ATGGGGAAGCGTAATTCTCAGCGTAAGAATGCGGCGATGTTGGACAGCGATGATGATAATAGTAGTGAGAGTTCAACGTCGACCGTTCGCTCTGATCGTATGTCAGTGGCCGGGAATGAAGAAATGCAAGTGGATAAGGATAGTTTACTGGACCAAGCTGTAGATGCTTTGTATGAGAAGAGGGGTTCCACAAGAGAAAAAGCTCTGTCATCAATTATTGAAGCGTTTAATAGCAACTTACAGCATCAGTTTGTGGAAAAGAAATTTGCAACTTTATTGCATCAGTGTCTGAATTGCATAAAAAAGGGTTCGTCCAAAGAGATATGTTTGGCGTCTCATGTGATTGGACTATTGGCTTTGACTGTCGGATGTGGGGACAATGCCAATGAATTACTGGAGGATTCACTACCTGTGATTTCGCAGGCTTTCAAATCAGGATCTGAAGCAACAAAGACATCCGCGTTACTGGAGTGTTTAGCTATTATCACTTTTGTTGGTGGTAGTGACCCAGAACAAACAGAAAAATCAATGCAAGTTATGTGGCAAGTGGTTCATCCGAAACTGAGTTCCAATGTAGTTGCAGTCAAACCCTCCGCCCCTGTAATAACCACCATGGTGTCTGCATGGTCCTTTCTTCTTACGACTATGGATGGGTGGAATCTTAATCCCAAAGATTGGCAAGAGTCCATATCATACTTATCTAGTCTGCTAGACAAGGATGACCGGTCTATACGGATAGCTTCTGGTGAAGCTTTGGCTTTAATTTTTGAGCTAGGAATTTTAGAGAAGTTCTCTGCCGGAGCTAAAATTTCAAGTGATAGCTCAACTGAAGAAGGAAATAAACCTCGAGAATATGTACATATACAAGGACTAAAGGCAAAAATTATTAATCAAGCCAGAAACCTTTCAGCTGAGGCAGGTGGTAAAAGTTCTGCTAAAAAAGATCTTAGCAACCAGCGGAATACGTTTCGGGATATCTTGGAATATTTTGAGGATGGTTATTCTCCTGAAATTTCAATAAAGATTGGTAGTGAATCGCTACAGACATCTACATGGGCACAGATGATACAGTTGAACTTTTTGAAGCACTTTCTTGGAGGAGGTTTTATCAAGCACATGCAGGAAAACGAACTCCTTCAGGATGTTTTTGGATTCACTCCAAAGAAAAAGTATCTTTCAGATTCTGAACATCGTCTATCCAGTAGTGAAAAGAGGCTGTTTAGATCACCAAACTCAGTTGTCAACAAAGCAAGGACCCAGCAACTTAACAAACAGCGAATGTTATCAGAGGGTAAAAATATTGGCCGCTTTGCAGCTAATATGGGGGATGATGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

446

Amino Acids

49.1

Weight (kDa)

6.3

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 908
Acc36I ACCTGC 1 cut(s) 908
AccB7I CCANNNNNTGG 1 cut(s) 675
AccI GTMKAC 1 cut(s) 80
AccII CGCG 1 cut(s) 461
AciI CCGC 5 cut(s) 32, 459, 594, 958, 1306
AclWI GGATC 1 cut(s) 445
AcoI YGGCCR 2 cut(s) 108, 1303
AcsI RAATTY 4 cut(s) 263, 777, 807, 1011
AcuI CTGAAG 3 cut(s) 462, 849, 1121
AcyI GRCGYC 1 cut(s) 332
AfaI GTAC 1 cut(s) 858
AfiI CCNNNNNNNGG 1 cut(s) 675
AgeI ACCGGT 1 cut(s) 723
AgsI TTSAA 7 cut(s) 75, 221, 430, 813, 1017, 1075, 1084
AleI CACNNNNGTG 1 cut(s) 614
Alw26I GTCTC 1 cut(s) 339
AlwI GGATC 1 cut(s) 445
AlwNI CAGNNNCTG 3 cut(s) 289, 440, 1184
Ama87I CYCGRG 1 cut(s) 846
AoxI GGCC 2 cut(s) 108, 1303
ApeKI GCWGC 1 cut(s) 1313
ApoI RAATTY 4 cut(s) 263, 777, 807, 1011
AseI ATTAAT 1 cut(s) 888
AsiGI ACCGGT 1 cut(s) 723
Asp700I GAANNNNTTC 2 cut(s) 904, 1134
AspS9I GGNCC 3 cut(s) 151, 627, 1254
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 2 cut(s) 758, 1218
AvaI CYCGRG 1 cut(s) 846
AvaII GGWCC 3 cut(s) 151, 627, 1254
BaeGI GKGCMC 1 cut(s) 1060
BbvCI CCTCAGC 1 cut(s) 912
BbvI GCAGC 1 cut(s) 1325
BccI CCATC 2 cut(s) 644, 989
BcnI CCSGG 1 cut(s) 112
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 3 cut(s) 702, 710, 773
BfmI CTRYAG 2 cut(s) 159, 1040
BfuAI ACCTGC 1 cut(s) 908
BglII AGATCT 1 cut(s) 943
BisI GCNGC 3 cut(s) 33, 1306, 1314
BlsI GCNGC 3 cut(s) 34, 1307, 1315
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 3 cut(s) 151, 627, 1254
BmeT110I CYCGRG 1 cut(s) 846
BmgT120I GGNCC 3 cut(s) 151, 627, 1254
BmiI GGNNCC 2 cut(s) 187, 1256
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 4 cut(s) 154, 253, 289, 1321
BplI GAGNNNNNCTC 2 cut(s) 776, 808
BpmI CTGGAG 2 cut(s) 416, 488
Bpu10I CCTNAGC 1 cut(s) 912
BpuMI CCSGG 1 cut(s) 112
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 612
BsaWI WCCGGW 1 cut(s) 723
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 1 cut(s) 723
Bse1I ACTGG 4 cut(s) 153, 399, 471, 1200
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 8 cut(s) 374, 455, 553, 655, 724, 1000, 1147, 1333
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMII CTCAG 4 cut(s) 32, 554, 903, 1248
BseNI ACTGG 4 cut(s) 153, 399, 471, 1200
BseRI GAGGAG 1 cut(s) 1113
BseSI GKGCMC 1 cut(s) 1060
BseXI GCAGC 1 cut(s) 1325
BseYI CCCAGC 1 cut(s) 1257
Bsh1236I CGCG 1 cut(s) 461
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 110, 1305
BshTI ACCGGT 1 cut(s) 723
BsiEI CGRYCG 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 846
BsiSI CCGG 3 cut(s) 111, 724, 798
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 1 cut(s) 389
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 2 cut(s) 110, 1305
BsoBI CYCGRG 1 cut(s) 846
Bsp1286I GDGCHC 1 cut(s) 1060
Bsp1407I TGTACA 1 cut(s) 856
Bsp143I GATC 4 cut(s) 94, 437, 943, 1223
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 5 cut(s) 32, 459, 594, 958, 1306
BspANI GGCC 2 cut(s) 110, 1305
BspCNI CTCAG 4 cut(s) 31, 555, 904, 1247
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 2 cut(s) 187, 1256
BspMI ACCTGC 1 cut(s) 908
BspPI GGATC 1 cut(s) 445
BsrFI RCCGGY 1 cut(s) 723
BsrGI TGTACA 1 cut(s) 856
BsrI ACTGG 4 cut(s) 153, 399, 471, 1200
BssAI RCCGGY 1 cut(s) 723
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 4 cut(s) 94, 437, 943, 1223
BssNI GRCGYC 1 cut(s) 332
BssT1I CCWWGG 1 cut(s) 612
Bst4CI ACNGT 3 cut(s) 85, 364, 1071
Bst6I CTCTTC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 856
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 5 cut(s) 18, 563, 912, 947, 1234
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 8 cut(s) 374, 455, 553, 655, 724, 1000, 1147, 1333
BstFNI CGCG 1 cut(s) 461
BstKTI GATC 4 cut(s) 97, 440, 946, 1226
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 4 cut(s) 94, 437, 943, 1223
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 1120
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 2 cut(s) 159, 1040
BstSLI GKGCMC 1 cut(s) 1060
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 1 cut(s) 1325
BstX2I RGATCY 2 cut(s) 437, 943
BstYI RGATCY 2 cut(s) 437, 943
BsuRI GGCC 2 cut(s) 110, 1305
BtgI CCRYGG 1 cut(s) 612
BtgZI GCGATG 2 cut(s) 50, 63
BtsCI GGATG 8 cut(s) 374, 455, 553, 655, 724, 1000, 1147, 1333
BtsIMutI CAGTG 2 cut(s) 111, 290
BveI ACCTGC 1 cut(s) 908
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 3 cut(s) 289, 440, 1184
Cfr10I RCCGGY 1 cut(s) 723
Cfr13I GGNCC 3 cut(s) 151, 627, 1254
CseI GACGC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 857
CspAI ACCGGT 1 cut(s) 723
CspCI CAANNNNNGTGG 2 cut(s) 521, 556
CviAII CATG 5 cut(s) 338, 613, 624, 1053, 1117
CviQI GTAC 1 cut(s) 857
DdeI CTNAG 5 cut(s) 18, 563, 912, 947, 1234
DpnI GATC 4 cut(s) 96, 439, 945, 1225
DpnII GATC 4 cut(s) 94, 437, 943, 1223
EaeI YGGCCR 2 cut(s) 108, 1303
Eam1104I CTCTTC 1 cut(s) 173
EarI CTCTTC 1 cut(s) 173
EciI GGCGGA 1 cut(s) 583
Eco130I CCWWGG 1 cut(s) 612
Eco32I GATATC 1 cut(s) 976
Eco47I GGWCC 3 cut(s) 151, 627, 1254
Eco57I CTGAAG 3 cut(s) 462, 849, 1121
Eco88I CYCGRG 1 cut(s) 846
EcoO109I RGGNCCY 1 cut(s) 1254
EcoRV GATATC 1 cut(s) 976
EcoT14I CCWWGG 1 cut(s) 612
ErhI CCWWGG 1 cut(s) 612
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 5 cut(s) 341, 616, 627, 1056, 1120
FaqI GGGAC 1 cut(s) 389
FatI CATG 5 cut(s) 337, 612, 623, 1052, 1116
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 3 cut(s) 33, 1306, 1314
FokI GGATG 7 cut(s) 381, 442, 540, 662, 731, 1007, 1154
Fsp4HI GCNGC 3 cut(s) 33, 1306, 1314
FspBI CTAG 3 cut(s) 702, 710, 773
GluI GCNGC 3 cut(s) 33, 1306, 1314
GsaI CCCAGC 1 cut(s) 1261
GsuI CTGGAG 2 cut(s) 416, 488
HaeIII GGCC 2 cut(s) 110, 1305
HapII CCGG 3 cut(s) 111, 724, 798
HgaI GACGC 1 cut(s) 321
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 5 cut(s) 341, 616, 627, 1056, 1120
HincII GTYRAC 2 cut(s) 81, 1243
HindII GTYRAC 2 cut(s) 81, 1243
HindIII AAGCTT 1 cut(s) 750
HinfI GANTC 6 cut(s) 401, 658, 683, 1034, 1152, 1181
HpaII CCGG 3 cut(s) 111, 724, 798
HphI GGTGA 2 cut(s) 758, 1218
Hpy166II GTNNAC 3 cut(s) 81, 146, 1243
Hpy188I TCNGA 8 cut(s) 94, 291, 368, 442, 558, 1180, 1186, 1288
Hpy188III TCNNGA 5 cut(s) 435, 848, 971, 1007, 1139
Hpy8I GTNNAC 3 cut(s) 81, 146, 1243
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 2 cut(s) 827, 1145
HpyCH4III ACNGT 3 cut(s) 85, 364, 1071
HpyCH4IV ACGT 2 cut(s) 77, 965
HpyCH4V TGCA 9 cut(s) 127, 269, 280, 297, 532, 581, 623, 1120, 1313
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 5 cut(s) 18, 563, 912, 947, 1234
HpySE526I ACGT 2 cut(s) 77, 965
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 5 cut(s) 341, 616, 627, 1056, 1120
Kzo9I GATC 4 cut(s) 94, 437, 943, 1223
LmnI GCTCC 1 cut(s) 800
Lsp1109I GCAGC 1 cut(s) 1325
LweI GCATC 4 cut(s) 154, 253, 289, 1321
MaeI CTAG 3 cut(s) 702, 710, 773
MaeII ACGT 2 cut(s) 77, 965
MaeIII GTNAC 2 cut(s) 462, 503
MalI GATC 4 cut(s) 96, 439, 945, 1225
MboI GATC 4 cut(s) 94, 437, 943, 1223
MboII GAAGA 4 cut(s) 131, 190, 626, 842
MflI RGATCY 2 cut(s) 437, 943
MhlI GDGCHC 1 cut(s) 1060
MlyI GAGTC 1 cut(s) 692
MmeI TCCRAC 2 cut(s) 21, 346
MroXI GAANNNNTTC 2 cut(s) 904, 1134
MseI TTAA 5 cut(s) 228, 663, 761, 888, 1266
MslI CAYNNNNRTG 2 cut(s) 614, 1051
MspA1I CMGCKG 2 cut(s) 911, 958
MspI CCGG 3 cut(s) 111, 724, 798
MspR9I CCNGG 1 cut(s) 112
Mva1269I GAATGC 1 cut(s) 34
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 1 cut(s) 164
NciI CCSGG 1 cut(s) 112
NcoI CCATGG 1 cut(s) 612
NdeII GATC 4 cut(s) 94, 437, 943, 1223
NlaIII CATG 5 cut(s) 341, 616, 627, 1056, 1120
NlaIV GGNNCC 2 cut(s) 187, 1256
NmuCI GTSAC 1 cut(s) 503
NspI RCATGY 1 cut(s) 1120
OliI CACNNNNGTG 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 846
PaqCI CACCTGC 1 cut(s) 908
PcsI WCGNNNNNNNCGW 1 cut(s) 94
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 2 cut(s) 904, 1134
PfeI GAWTC 5 cut(s) 401, 658, 1034, 1152, 1181
PflMI CCANNNNNTGG 1 cut(s) 675
PinAI ACCGGT 1 cut(s) 723
PkrI GCNGC 3 cut(s) 34, 1307, 1315
PleI GAGTC 1 cut(s) 691
PpsI GAGTC 1 cut(s) 691
PpuMI RGGWCCY 1 cut(s) 1254
PshBI ATTAAT 1 cut(s) 888
Psp5II RGGWCCY 1 cut(s) 1254
PspFI CCCAGC 1 cut(s) 1257
PspN4I GGNNCC 2 cut(s) 187, 1256
PspPI GGNCC 3 cut(s) 151, 627, 1254
PspPPI RGGWCCY 1 cut(s) 1254
PsrI GAACNNNNNNTAC 2 cut(s) 55, 87
PstNI CAGNNNCTG 3 cut(s) 289, 440, 1184
PsuI RGATCY 2 cut(s) 437, 943
PvuII CAGCTG 1 cut(s) 911
RsaI GTAC 1 cut(s) 858
RsaNI GTAC 1 cut(s) 857
RseI CAYNNNNRTG 2 cut(s) 614, 1051
SalI GTCGAC 1 cut(s) 79
SaqAI TTAA 5 cut(s) 228, 663, 761, 888, 1266
SatI GCNGC 3 cut(s) 33, 1306, 1314
Sau3AI GATC 4 cut(s) 94, 437, 943, 1223
Sau96I GGNCC 3 cut(s) 151, 627, 1254
SchI GAGTC 1 cut(s) 692
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 1060
SfaNI GCATC 4 cut(s) 154, 253, 289, 1321
SfcI CTRYAG 2 cut(s) 159, 1040
Sfr274I CTCGAG 1 cut(s) 846
SinI GGWCC 3 cut(s) 151, 627, 1254
SlaI CTCGAG 1 cut(s) 846
SmiMI CAYNNNNRTG 2 cut(s) 614, 1051
SmlI CTYRAG 1 cut(s) 846
SmoI CTYRAG 1 cut(s) 846
SsiI CCGC 5 cut(s) 32, 459, 594, 958, 1306
SspI AATATT 2 cut(s) 986, 1300
SspMI CTAG 3 cut(s) 702, 710, 773
StyD4I CCNGG 1 cut(s) 110
StyI CCWWGG 1 cut(s) 612
TaaI ACNGT 3 cut(s) 85, 364, 1071
TaiI ACGT 2 cut(s) 80, 968
TaqI TCGA 2 cut(s) 80, 847
TatI WGTACW 1 cut(s) 856
TauI GCSGC 2 cut(s) 35, 1308
TfiI GAWTC 5 cut(s) 401, 658, 1034, 1152, 1181
Tru1I TTAA 5 cut(s) 228, 663, 761, 888, 1266
Tru9I TTAA 5 cut(s) 228, 663, 761, 888, 1266
TscAI CASTG 2 cut(s) 111, 290
TseFI GTSAC 1 cut(s) 503
TseI GCWGC 1 cut(s) 1313
Tsp45I GTSAC 1 cut(s) 503
TspDTI ATGAA 3 cut(s) 132, 402, 542
TspGWI ACGGA 1 cut(s) 748
TspRI CASTG 2 cut(s) 111, 290
Van91I CCANNNNNTGG 1 cut(s) 675
VpaK11BI GGWCC 3 cut(s) 151, 627, 1254
VspI ATTAAT 1 cut(s) 888
XapI RAATTY 4 cut(s) 263, 777, 807, 1011
XceI RCATGY 1 cut(s) 1120
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XhoI CTCGAG 1 cut(s) 846
XmiI GTMKAC 1 cut(s) 80
XmnI GAANNNNTTC 2 cut(s) 904, 1134
XspI CTAG 3 cut(s) 702, 710, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.