Rh6BG494700
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0008512
Physical Location & Seq
Reverse (-)
69631938 .. 69636887
4950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG494700.1

Sequence Viewer

Length: 1032 bp
ATGGGGAAGCGGAATAATCAACGTAAGAATGCGGCGATGATGTTGGATAGCGATGACGATAATAGTAGCGTGAGTTCAACGTCGACTATGCGCTCTGACCTTGTGTTTGCGCCAGCGAATGATGAAGTGCAAGTCGACAAGGATAGCTTGCTTGACCAAGCTCTCGATGCTCTCTATGAGAAGAGGGGTTCCACTAGGGAAAAAGCTCTGGCTTCAATTGTGGAAGCGTTTAATAGCAGCTTGCAGCATGAGTTTGTGGAAAAGAAATTTGCCACTTTATTGCATCAGTGTCTGAATTGCATTAAAAAGGGTTCGTCCAAAGAGATATGCTTGGCATCTCATGTGATTGGATTGCTGGCTTTGACTGTTGGTTGTGGGGACAATGCTAATGAAATGCTTGAAGAATCCTTACCTGTGATTTCGCAGGCTTTCAAATCTGGATCTGAACCCACAAAGACAATAGCGTTGCTGGAGTGTTTAGCTATCATCACTTTCGTTGGTGGTAACGACCCAGAACAAACAGAAAAATCAATGCAAGTTATGTGGCAAGTGGTTCACCCAAAACTGAAATCAAACGTGGTTGCAGTTAAACCTACAGCGGCTGTCATAACTACGATGGTGTTTGCATGGTCCTTTCTTCTTACAACTGTAGATGGATGGAAATTTAATCCCAAAGATTGGCAAGAGTCCATATCATATTTGTCTAGTCTTCTAGACAAGGATGACCGCTCTGTGCGGATAGCTGCTGGTGAAGCTCTGGCATTAATTTTTGAAATAGGAAGCTTAGAGAAGTTCTCTGTTGGCACAAAAAGTTCTGATGATGGCTCAACTGAAGAAGGAAATTACCCTCGAGAGTATGTACATATACAAGGATTGAAAGCAAAGATTATTAATCAAGCCAGAGACCTTTCAGCTGAGGCAGGTGGCAAAAGTTCTGCTAAGAAAGATCTTACCAACCAGCGGAACATGTTTCGGGATATCTTGGAATACTTTGAGGTGCTTCTTCATTTTATTTTTTTTCATTTACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

343

Amino Acids

37.9

Weight (kDa)

5.39

Isoelectric Point (pI)

28.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 23 - 332 2e-95 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 911
Acc36I ACCTGC 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 729
AccI GTMKAC 2 cut(s) 83, 135
AciI CCGC 6 cut(s) 10, 32, 599, 727, 736, 961
AclWI GGATC 1 cut(s) 448
AcsI RAATTY 2 cut(s) 266, 662
AcuI CTGAAG 1 cut(s) 852
AfaI GTAC 1 cut(s) 861
AfiI CCNNNNNNNGG 2 cut(s) 678, 960
AflIII ACRYGT 1 cut(s) 966
AgsI TTSAA 6 cut(s) 78, 216, 401, 433, 773, 877
AluBI AGCT 9 cut(s) 147, 161, 206, 240, 482, 743, 755, 783, 914
AluI AGCT 9 cut(s) 147, 161, 206, 240, 482, 743, 755, 783, 914
Alw26I GTCTC 1 cut(s) 897
AlwI GGATC 1 cut(s) 448
AlwNI CAGNNNCTG 2 cut(s) 292, 602
Ama87I CYCGRG 1 cut(s) 849
ApeKI GCWGC 3 cut(s) 237, 244, 743
ApoI RAATTY 2 cut(s) 266, 662
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AseI ATTAAT 2 cut(s) 764, 891
AspLEI GCGC 2 cut(s) 93, 112
AspS9I GGNCC 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 548, 761
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 1 cut(s) 630
BarI GAAGNNNNNNTAC 2 cut(s) 393, 425
BbsI GAAGAC 1 cut(s) 701
BbvCI CCTCAGC 1 cut(s) 915
BbvI GCAGC 3 cut(s) 249, 256, 730
BccI CCATC 4 cut(s) 610, 647, 651, 815
BcoDI GTCTC 1 cut(s) 897
BfaI CTAG 3 cut(s) 195, 705, 713
BfmI CTRYAG 3 cut(s) 594, 648, 1028
BfuAI ACCTGC 1 cut(s) 911
BglII AGATCT 1 cut(s) 946
BisI GCNGC 5 cut(s) 33, 238, 245, 600, 744
BlsI GCNGC 5 cut(s) 34, 239, 246, 601, 745
Bme18I GGWCC 1 cut(s) 630
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 1 cut(s) 630
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 3 cut(s) 157, 292, 344
BpiI GAAGAC 1 cut(s) 701
BplI GAGNNNNNCTC 2 cut(s) 779, 811
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 915
BsaI GGTCTC 1 cut(s) 897
Bsc4I CCNNNNNNNGG 2 cut(s) 678, 960
BseGI GGATG 2 cut(s) 662, 727
BseLI CCNNNNNNNGG 2 cut(s) 678, 960
BseMII CTCAG 1 cut(s) 906
BseXI GCAGC 3 cut(s) 249, 256, 730
BsiHKCI CYCGRG 1 cut(s) 849
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 678, 960
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 897
BsoBI CYCGRG 1 cut(s) 849
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 2 cut(s) 440, 946
BspACI CCGC 6 cut(s) 10, 32, 599, 727, 736, 961
BspCNI CTCAG 1 cut(s) 907
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 911
BspPI GGATC 1 cut(s) 448
BspTNI GGTCTC 1 cut(s) 897
BsrBI CCGCTC 1 cut(s) 729
BsrGI TGTACA 1 cut(s) 859
BssMI GATC 2 cut(s) 440, 946
Bst4CI ACNGT 3 cut(s) 367, 649, 1029
Bst6I CTCTTC 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 859
BstC8I GCNNGC 5 cut(s) 114, 149, 242, 357, 426
BstDEI CTNAG 3 cut(s) 784, 915, 939
BstF5I GGATG 2 cut(s) 662, 727
BstHHI GCGC 2 cut(s) 93, 112
BstKTI GATC 2 cut(s) 443, 949
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 2 cut(s) 440, 946
BstMWI GCNNNNNNNGC 2 cut(s) 167, 752
BstNSI RCATGY 1 cut(s) 970
BstSFI CTRYAG 3 cut(s) 594, 648, 1028
BstV1I GCAGC 3 cut(s) 249, 256, 730
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 2 cut(s) 440, 946
BstYI RGATCY 2 cut(s) 440, 946
BtgZI GCGATG 2 cut(s) 50, 66
BtsCI GGATG 2 cut(s) 662, 727
BtsIMutI CAGTG 1 cut(s) 293
BveI ACCTGC 1 cut(s) 911
Cac8I GCNNGC 5 cut(s) 114, 149, 242, 357, 426
CaiI CAGNNNCTG 2 cut(s) 292, 602
CfoI GCGC 2 cut(s) 93, 112
Cfr13I GGNCC 1 cut(s) 630
Csp6I GTAC 1 cut(s) 860
CspCI CAANNNNNGTGG 2 cut(s) 524, 559
CviAII CATG 4 cut(s) 248, 341, 627, 967
CviQI GTAC 1 cut(s) 860
DdeI CTNAG 3 cut(s) 784, 915, 939
DpnI GATC 2 cut(s) 442, 948
DpnII GATC 2 cut(s) 440, 946
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 897
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 852
Eco88I CYCGRG 1 cut(s) 849
EcoRV GATATC 1 cut(s) 979
FaeI CATG 4 cut(s) 251, 344, 630, 970
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 392
FatI CATG 4 cut(s) 247, 340, 626, 966
FblI GTMKAC 2 cut(s) 83, 135
Fnu4HI GCNGC 5 cut(s) 33, 238, 245, 600, 744
FokI GGATG 2 cut(s) 669, 734
Fsp4HI GCNGC 5 cut(s) 33, 238, 245, 600, 744
FspBI CTAG 3 cut(s) 195, 705, 713
GlaI GCGC 2 cut(s) 92, 111
GluI GCNGC 5 cut(s) 33, 238, 245, 600, 744
GsuI CTGGAG 1 cut(s) 491
HhaI GCGC 2 cut(s) 93, 112
Hin1II CATG 4 cut(s) 251, 344, 630, 970
Hin6I GCGC 2 cut(s) 91, 110
HinP1I GCGC 2 cut(s) 91, 110
HincII GTYRAC 2 cut(s) 84, 136
HindII GTYRAC 2 cut(s) 84, 136
HindIII AAGCTT 1 cut(s) 781
HinfI GANTC 2 cut(s) 404, 686
HphI GGTGA 2 cut(s) 548, 761
Hpy166II GTNNAC 3 cut(s) 84, 136, 556
Hpy188I TCNGA 4 cut(s) 97, 294, 445, 817
Hpy188III TCNNGA 5 cut(s) 164, 438, 713, 851, 974
Hpy8I GTNNAC 3 cut(s) 84, 136, 556
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 830
HpyCH4III ACNGT 3 cut(s) 367, 649, 1029
HpyCH4IV ACGT 3 cut(s) 22, 80, 576
HpyCH4V TGCA 7 cut(s) 130, 244, 283, 300, 535, 584, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 752
HpyF3I CTNAG 3 cut(s) 784, 915, 939
HpySE526I ACGT 3 cut(s) 22, 80, 576
Hsp92II CATG 4 cut(s) 251, 344, 630, 970
HspAI GCGC 2 cut(s) 91, 110
Kzo9I GATC 2 cut(s) 440, 946
Lsp1109I GCAGC 3 cut(s) 249, 256, 730
LweI GCATC 3 cut(s) 157, 292, 344
MaeI CTAG 3 cut(s) 195, 705, 713
MaeII ACGT 3 cut(s) 22, 80, 576
MaeIII GTNAC 1 cut(s) 503
MalI GATC 2 cut(s) 442, 948
MbiI CCGCTC 1 cut(s) 729
MboI GATC 2 cut(s) 440, 946
MboII GAAGA 6 cut(s) 193, 413, 629, 701, 845, 995
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 2 cut(s) 440, 946
MluCI AATT 6 cut(s) 216, 266, 295, 662, 765, 841
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 4 cut(s) 177, 858, 910, 988
MseI TTAA 6 cut(s) 231, 303, 588, 666, 764, 891
MspA1I CMGCKG 3 cut(s) 599, 914, 961
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 167, 752
NdeII GATC 2 cut(s) 440, 946
NlaIII CATG 4 cut(s) 251, 344, 630, 970
NlaIV GGNNCC 1 cut(s) 190
NspI RCATGY 1 cut(s) 970
PaeR7I CTCGAG 1 cut(s) 849
PaqCI CACCTGC 1 cut(s) 911
PciI ACATGT 1 cut(s) 966
PctI GAATGC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 404
PflMI CCANNNNNTGG 1 cut(s) 678
PkrI GCNGC 5 cut(s) 34, 239, 246, 601, 745
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PscI ACATGT 1 cut(s) 966
PshBI ATTAAT 2 cut(s) 764, 891
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 630
PsrI GAACNNNNNNTAC 2 cut(s) 58, 90
PstNI CAGNNNCTG 2 cut(s) 292, 602
PsuI RGATCY 2 cut(s) 440, 946
PvuII CAGCTG 1 cut(s) 914
RsaI GTAC 1 cut(s) 861
RsaNI GTAC 1 cut(s) 860
SalI GTCGAC 2 cut(s) 82, 134
SaqAI TTAA 6 cut(s) 231, 303, 588, 666, 764, 891
SatI GCNGC 5 cut(s) 33, 238, 245, 600, 744
Sau3AI GATC 2 cut(s) 440, 946
Sau96I GGNCC 1 cut(s) 630
SchI GAGTC 1 cut(s) 695
SfaNI GCATC 3 cut(s) 157, 292, 344
SfcI CTRYAG 3 cut(s) 594, 648, 1028
Sfr274I CTCGAG 1 cut(s) 849
SinI GGWCC 1 cut(s) 630
SlaI CTCGAG 1 cut(s) 849
SmlI CTYRAG 1 cut(s) 849
SmoI CTYRAG 1 cut(s) 849
Sse9I AATT 6 cut(s) 216, 266, 295, 662, 765, 841
SsiI CCGC 6 cut(s) 10, 32, 599, 727, 736, 961
SspMI CTAG 3 cut(s) 195, 705, 713
TaaI ACNGT 3 cut(s) 367, 649, 1029
TaiI ACGT 3 cut(s) 25, 83, 579
TaqI TCGA 4 cut(s) 83, 135, 165, 850
TasI AATT 6 cut(s) 216, 266, 295, 662, 765, 841
TatI WGTACW 1 cut(s) 859
TauI GCSGC 2 cut(s) 35, 602
TfiI GAWTC 1 cut(s) 404
Tru1I TTAA 6 cut(s) 231, 303, 588, 666, 764, 891
Tru9I TTAA 6 cut(s) 231, 303, 588, 666, 764, 891
TscAI CASTG 1 cut(s) 293
TseI GCWGC 3 cut(s) 237, 244, 743
TspDTI ATGAA 4 cut(s) 138, 405, 995, 1010
TspRI CASTG 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 678
VpaK11BI GGWCC 1 cut(s) 630
VspI ATTAAT 2 cut(s) 764, 891
XapI RAATTY 2 cut(s) 266, 662
XbaI TCTAGA 1 cut(s) 712
XceI RCATGY 1 cut(s) 970
XhoI CTCGAG 1 cut(s) 849
XmiI GTMKAC 2 cut(s) 83, 135
XspI CTAG 3 cut(s) 195, 705, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.