Rh6AG485400
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008512
Physical Location & Seq
Reverse (-)
66428885 .. 66432984
4100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG485400.1

Sequence Viewer

Length: 1293 bp
ATGGGGAAGCGGAATAATCAACGTAAGAATGCGGCGGTGATGTTGGATAGCGATGACGATAATAGTAGCGTGAGTTCAACGTCGACGATGCGCTCTGACCTTGTGTTTGCGCCAGGAAATGATGAAGTGCAAGTCGACAAGGATAGCTTGCTTGACCAAGCTCTCGATGCTCTCTATGAGAAGAGGGGTTCCACTAGGGAAAAAGCTCTGGCTTCAATTGTGGAAGCGTTTAATAGCAGCTTGCAGCATGAGTTTGTGGAAAAGAAATTTGCCACTTTATTGCATCAGTGTCTGAATTGCATTAAGAAGGGTTCGTCTAAAGAGATATGCTTGGCATCTCATGTGATTGGATTGCTGGCTTTGACTGTTGGTTGTGGGGACAATGCTAATGAAATGCTTGAAGAATCCTTACCTGTGATTTCGCAGGCTTTCAAATCTGGATCTGAATCCACAAAGACAATAGCGTTGCTGGAGTGTTTAGCTATCATCACTTTCGTTGGTGGTAATGACCCAGAGCAAACAGAAAAATCAATGCAAGTTATGTGGCAAGTGGTTCATCCAAAACTGAAATCAAACGTGGTTGCAGTTAAACCTTCAGCGGCTGTAATAACTACGATGGTGTTTGCATGGTCCTTTCTTCTTACCACTGTAGATGGATGGAAATTTAATCCCAAAGATTGGCAGGAGTCCATATCATATTTGTCTAGTCTTCTAGACAAGGATGACCGCTCTGTGCGGATAGCTGCTGGTGAAGCTCTGGCATTAATTTTTGAAATAGGAAGCTTAGAGAAGTTCTCTGTTGGCACAAAAAGTTCTGATGATGGCTCAACTGAAGAAGGAAATAAGCCTCGAGAGTATGTACATATACAAGGATTGAAAGCAAAGATTATTAATCAAGCCAGAGACCTTTCAGCTGAGGCAGGTGGCAAAAGTGCTGCTAAGAAAGATCTTACCAACCAGCGGAACATGTTTCGGGATATCTTGGAATACTTTGAGGATGATTATTCTCCTGAAATTTCAATTAAGATCGGTAGTGATTCACTACAGACATCAACATGGTCGCAGCTGATACAGTTGAACTTTTTGAAGCACTTTCTTGGAGGAGGGTTTATAAAGCACATGCAGGAAAACGAACTCCTTCAGGATGTCTTAGGGTTCACTCCAAAGAAAAAGTGTGTGGATTTTGAAAATCGTCTATCTGGTAGTGAAAAGGTTTGTTATAATCCAGTAGGAATCATTCTGTATCGGCTGTATTGTGGTTTAATGGATCTGCTACTAATTTTATATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

430

Amino Acids

47.57

Weight (kDa)

5.37

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 24 - 332 6.8e-95 Interferon-related developmental regulator (IFRD)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1112, 1221
AarI CACCTGC 1 cut(s) 911
Acc36I ACCTGC 1 cut(s) 911
AccB7I CCANNNNNTGG 1 cut(s) 678
AccBSI CCGCTC 1 cut(s) 729
AccI GTMKAC 2 cut(s) 83, 135
AciI CCGC 7 cut(s) 10, 32, 35, 599, 727, 736, 961
AclWI GGATC 2 cut(s) 448, 1275
AcsI RAATTY 3 cut(s) 266, 662, 1014
AcuI CTGAAG 3 cut(s) 579, 852, 1124
AfaI GTAC 1 cut(s) 861
AfiI CCNNNNNNNGG 2 cut(s) 678, 960
AflIII ACRYGT 1 cut(s) 966
AjnI CCWGG 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 897
AlwI GGATC 2 cut(s) 448, 1275
AlwNI CAGNNNCTG 2 cut(s) 292, 602
Ama87I CYCGRG 1 cut(s) 849
ApeKI GCWGC 5 cut(s) 237, 244, 743, 935, 1063
ApoI RAATTY 3 cut(s) 266, 662, 1014
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AseI ATTAAT 2 cut(s) 764, 891
Asp700I GAANNNNTTC 1 cut(s) 1137
AspLEI GCGC 2 cut(s) 93, 112
AspS9I GGNCC 1 cut(s) 630
AsuHPI GGTGA 2 cut(s) 49, 761
AvaI CYCGRG 1 cut(s) 849
AvaII GGWCC 1 cut(s) 630
BarI GAAGNNNNNNTAC 2 cut(s) 393, 425
BbsI GAAGAC 1 cut(s) 701
BbvCI CCTCAGC 1 cut(s) 915
BbvI GCAGC 5 cut(s) 249, 256, 730, 922, 1075
BccI CCATC 4 cut(s) 610, 647, 651, 815
BciT130I CCWGG 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 897
BfaI CTAG 3 cut(s) 195, 705, 713
BfmI CTRYAG 2 cut(s) 648, 1043
BfuAI ACCTGC 1 cut(s) 911
BglII AGATCT 1 cut(s) 946
BisI GCNGC 7 cut(s) 33, 238, 245, 600, 744, 936, 1064
BlsI GCNGC 7 cut(s) 34, 239, 246, 601, 745, 937, 1065
Bme1390I CCNGG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 630
BmeT110I CYCGRG 1 cut(s) 849
BmgT120I GGNCC 1 cut(s) 630
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 114
BmsI GCATC 4 cut(s) 78, 157, 292, 344
BpiI GAAGAC 1 cut(s) 701
BplI GAGNNNNNCTC 2 cut(s) 779, 811
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 915
BsaBI GATNNNNATC 1 cut(s) 445
BsaI GGTCTC 1 cut(s) 897
Bsc4I CCNNNNNNNGG 2 cut(s) 678, 960
Bse1I ACTGG 1 cut(s) 1226
Bse8I GATNNNNATC 1 cut(s) 445
BseBI CCWGG 1 cut(s) 114
BseGI GGATG 5 cut(s) 556, 662, 727, 1003, 1150
BseJI GATNNNNATC 1 cut(s) 445
BseLI CCNNNNNNNGG 2 cut(s) 678, 960
BseMII CTCAG 1 cut(s) 906
BseNI ACTGG 1 cut(s) 1226
BseRI GAGGAG 1 cut(s) 1116
BseXI GCAGC 5 cut(s) 249, 256, 730, 922, 1075
BsiHKCI CYCGRG 1 cut(s) 849
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 678, 960
BsmAI GTCTC 1 cut(s) 897
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 1 cut(s) 34
Bso31I GGTCTC 1 cut(s) 897
BsoBI CYCGRG 1 cut(s) 849
Bsp1407I TGTACA 1 cut(s) 859
Bsp143I GATC 4 cut(s) 440, 946, 1026, 1267
BspACI CCGC 7 cut(s) 10, 32, 35, 599, 727, 736, 961
BspCNI CTCAG 1 cut(s) 907
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 911
BspPI GGATC 2 cut(s) 448, 1275
BspTNI GGTCTC 1 cut(s) 897
BsrBI CCGCTC 1 cut(s) 729
BsrGI TGTACA 1 cut(s) 859
BsrI ACTGG 1 cut(s) 1226
BssMI GATC 4 cut(s) 440, 946, 1026, 1267
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 367, 649, 1074
Bst6I CTCTTC 1 cut(s) 176
BstAUI TGTACA 1 cut(s) 859
BstC8I GCNNGC 4 cut(s) 149, 242, 357, 426
BstDEI CTNAG 4 cut(s) 784, 915, 939, 1150
BstF5I GGATG 5 cut(s) 556, 662, 727, 1003, 1150
BstHHI GCGC 2 cut(s) 93, 112
BstKTI GATC 4 cut(s) 443, 949, 1029, 1270
BstMAI GTCTC 1 cut(s) 897
BstMBI GATC 4 cut(s) 440, 946, 1026, 1267
BstMWI GCNNNNNNNGC 2 cut(s) 167, 752
BstNI CCWGG 1 cut(s) 114
BstNSI RCATGY 2 cut(s) 970, 1123
BstSCI CCNGG 1 cut(s) 112
BstSFI CTRYAG 2 cut(s) 648, 1043
BstV1I GCAGC 5 cut(s) 249, 256, 730, 922, 1075
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 3 cut(s) 440, 946, 1267
BstYI RGATCY 3 cut(s) 440, 946, 1267
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 5 cut(s) 556, 662, 727, 1003, 1150
BtsIMutI CAGTG 2 cut(s) 293, 645
BveI ACCTGC 1 cut(s) 911
Cac8I GCNNGC 4 cut(s) 149, 242, 357, 426
CaiI CAGNNNCTG 2 cut(s) 292, 602
CfoI GCGC 2 cut(s) 93, 112
Cfr13I GGNCC 1 cut(s) 630
Csp6I GTAC 1 cut(s) 860
CspCI CAANNNNNGTGG 2 cut(s) 524, 559
CviAII CATG 6 cut(s) 248, 341, 627, 967, 1056, 1120
CviQI GTAC 1 cut(s) 860
DdeI CTNAG 4 cut(s) 784, 915, 939, 1150
DpnI GATC 4 cut(s) 442, 948, 1028, 1269
DpnII GATC 4 cut(s) 440, 946, 1026, 1267
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 897
Eco32I GATATC 1 cut(s) 979
Eco47I GGWCC 1 cut(s) 630
Eco57I CTGAAG 3 cut(s) 579, 852, 1124
Eco88I CYCGRG 1 cut(s) 849
EcoRII CCWGG 1 cut(s) 112
EcoRV GATATC 1 cut(s) 979
FaeI CATG 6 cut(s) 251, 344, 630, 970, 1059, 1123
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 392
FatI CATG 6 cut(s) 247, 340, 626, 966, 1055, 1119
FblI GTMKAC 2 cut(s) 83, 135
Fnu4HI GCNGC 7 cut(s) 33, 238, 245, 600, 744, 936, 1064
FokI GGATG 5 cut(s) 543, 669, 734, 1010, 1157
Fsp4HI GCNGC 7 cut(s) 33, 238, 245, 600, 744, 936, 1064
FspBI CTAG 3 cut(s) 195, 705, 713
GlaI GCGC 2 cut(s) 92, 111
GluI GCNGC 7 cut(s) 33, 238, 245, 600, 744, 936, 1064
GsuI CTGGAG 1 cut(s) 491
HhaI GCGC 2 cut(s) 93, 112
Hin1II CATG 6 cut(s) 251, 344, 630, 970, 1059, 1123
Hin6I GCGC 2 cut(s) 91, 110
HinP1I GCGC 2 cut(s) 91, 110
HincII GTYRAC 2 cut(s) 84, 136
HindII GTYRAC 2 cut(s) 84, 136
HindIII AAGCTT 1 cut(s) 781
HinfI GANTC 5 cut(s) 404, 446, 686, 1037, 1233
HphI GGTGA 2 cut(s) 49, 761
Hpy166II GTNNAC 3 cut(s) 84, 136, 1158
Hpy188I TCNGA 4 cut(s) 97, 294, 445, 817
Hpy188III TCNNGA 7 cut(s) 164, 438, 713, 851, 974, 1010, 1142
Hpy8I GTNNAC 3 cut(s) 84, 136, 1158
Hpy99I CGWCG 2 cut(s) 85, 88
HpyAV CCTTC 4 cut(s) 301, 603, 830, 1148
HpyCH4III ACNGT 3 cut(s) 367, 649, 1074
HpyCH4IV ACGT 3 cut(s) 22, 80, 576
HpyCH4V TGCA 8 cut(s) 130, 244, 283, 300, 535, 584, 626, 1123
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 752
HpyF3I CTNAG 4 cut(s) 784, 915, 939, 1150
HpySE526I ACGT 3 cut(s) 22, 80, 576
Hsp92II CATG 6 cut(s) 251, 344, 630, 970, 1059, 1123
HspAI GCGC 2 cut(s) 91, 110
Kzo9I GATC 4 cut(s) 440, 946, 1026, 1267
Lsp1109I GCAGC 5 cut(s) 249, 256, 730, 922, 1075
LweI GCATC 4 cut(s) 78, 157, 292, 344
MaeI CTAG 3 cut(s) 195, 705, 713
MaeII ACGT 3 cut(s) 22, 80, 576
MalI GATC 4 cut(s) 442, 948, 1028, 1269
MbiI CCGCTC 1 cut(s) 729
MboI GATC 4 cut(s) 440, 946, 1026, 1267
MboII GAAGA 5 cut(s) 193, 413, 629, 701, 845
MfeI CAATTG 1 cut(s) 216
MflI RGATCY 3 cut(s) 440, 946, 1267
MluCI AATT 8 cut(s) 216, 266, 295, 662, 765, 1014, 1020, 1278
MlyI GAGTC 1 cut(s) 695
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 6 cut(s) 177, 858, 910, 988, 1094, 1097
MroXI GAANNNNTTC 1 cut(s) 1137
MseI TTAA 9 cut(s) 231, 303, 588, 666, 764, 891, 1023, 1262, 1291
MslI CAYNNNNRTG 1 cut(s) 1054
MspA1I CMGCKG 4 cut(s) 599, 914, 961, 1066
MspR9I CCNGG 1 cut(s) 114
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 167, 752
NdeII GATC 4 cut(s) 440, 946, 1026, 1267
NlaIII CATG 6 cut(s) 251, 344, 630, 970, 1059, 1123
NlaIV GGNNCC 1 cut(s) 190
NspI RCATGY 2 cut(s) 970, 1123
PaeR7I CTCGAG 1 cut(s) 849
PaqCI CACCTGC 1 cut(s) 911
PciI ACATGT 1 cut(s) 966
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 1137
PfeI GAWTC 4 cut(s) 404, 446, 1037, 1233
PflMI CCANNNNNTGG 1 cut(s) 678
PkrI GCNGC 7 cut(s) 34, 239, 246, 601, 745, 937, 1065
PleI GAGTC 1 cut(s) 694
PpsI GAGTC 1 cut(s) 694
PscI ACATGT 1 cut(s) 966
PshBI ATTAAT 2 cut(s) 764, 891
PsiI TTATAA 2 cut(s) 1112, 1221
Psp6I CCWGG 1 cut(s) 112
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 630
PsrI GAACNNNNNNTAC 2 cut(s) 58, 90
PstNI CAGNNNCTG 2 cut(s) 292, 602
PsuI RGATCY 3 cut(s) 440, 946, 1267
PvuII CAGCTG 2 cut(s) 914, 1066
RsaI GTAC 1 cut(s) 861
RsaNI GTAC 1 cut(s) 860
RseI CAYNNNNRTG 1 cut(s) 1054
SalI GTCGAC 2 cut(s) 82, 134
SaqAI TTAA 9 cut(s) 231, 303, 588, 666, 764, 891, 1023, 1262, 1291
SatI GCNGC 7 cut(s) 33, 238, 245, 600, 744, 936, 1064
Sau3AI GATC 4 cut(s) 440, 946, 1026, 1267
Sau96I GGNCC 1 cut(s) 630
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 1 cut(s) 114
SfaNI GCATC 4 cut(s) 78, 157, 292, 344
SfcI CTRYAG 2 cut(s) 648, 1043
Sfr274I CTCGAG 1 cut(s) 849
SgrDI CGTCGACG 1 cut(s) 82
SinI GGWCC 1 cut(s) 630
SlaI CTCGAG 1 cut(s) 849
SmiMI CAYNNNNRTG 1 cut(s) 1054
SmlI CTYRAG 1 cut(s) 849
SmoI CTYRAG 1 cut(s) 849
Sse9I AATT 8 cut(s) 216, 266, 295, 662, 765, 1014, 1020, 1278
SsiI CCGC 7 cut(s) 10, 32, 35, 599, 727, 736, 961
SspMI CTAG 3 cut(s) 195, 705, 713
StyD4I CCNGG 1 cut(s) 112
TaaI ACNGT 3 cut(s) 367, 649, 1074
TaiI ACGT 3 cut(s) 25, 83, 579
TaqI TCGA 4 cut(s) 83, 135, 165, 850
TasI AATT 8 cut(s) 216, 266, 295, 662, 765, 1014, 1020, 1278
TatI WGTACW 1 cut(s) 859
TauI GCSGC 2 cut(s) 35, 602
TfiI GAWTC 4 cut(s) 404, 446, 1037, 1233
Tru1I TTAA 9 cut(s) 231, 303, 588, 666, 764, 891, 1023, 1262, 1291
Tru9I TTAA 9 cut(s) 231, 303, 588, 666, 764, 891, 1023, 1262, 1291
TscAI CASTG 2 cut(s) 293, 652
TseI GCWGC 5 cut(s) 237, 244, 743, 935, 1063
TspDTI ATGAA 3 cut(s) 138, 405, 545
TspRI CASTG 2 cut(s) 293, 652
Van91I CCANNNNNTGG 1 cut(s) 678
VpaK11BI GGWCC 1 cut(s) 630
VspI ATTAAT 2 cut(s) 764, 891
XapI RAATTY 3 cut(s) 266, 662, 1014
XbaI TCTAGA 1 cut(s) 712
XceI RCATGY 2 cut(s) 970, 1123
XhoI CTCGAG 1 cut(s) 849
XmiI GTMKAC 2 cut(s) 83, 135
XmnI GAANNNNTTC 1 cut(s) 1137
XspI CTAG 3 cut(s) 195, 705, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.