Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007283.1

Orthogroup ID

OG0008512

Physical Location & Seq

Genomic Coordinates Reverse (-)

1417 .. 4452

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007283.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atggggaagcggaataatcaacgtaagaatgcggcggtgatgttggatagcgatgacgataatagtagcgtgagttcaacgtcgactatgcgctctgaccttgtgtttgcgccaggaaatgatgaagtgcaagtcgacaaggatagcttgcttgaccaagctctcgatgctctctatgagaagaggggttccactagggaaagagctctggcttcgattgtggaagcgtttaatagcagcttgcagcgtgagtttgtggaaaagaaatttgccactttattgcatcagtgtctgaattgcattaaaaagggttcgtccaaagagatatgcttggcatctcatgtgattggattgctggctttgactgttggttgtggggacaatgctaatgaaatgcttgaagaatccttacctgtgatttcgcaggctttcaaatctggatctgaatccacaaagacaatagcgttgctggagtgtttagctatcatcactttcgttggtggtaatgacccagagcaaacagaaaaatcaatgcaagttatgtggcaagtggttcatccaaaactgaaatcaaacgtggttgcagttaaaccttcagcggctgtaataactacaatggtgtttgcatggtcctttcttcttacaactgtagatggatggaaatttaatcccaaagattggcaggagtccatatcatatttgtccagtcttctagacaaggatgaccgctctgtgcggatagctgctggtgaagctctggcattaatttttgaaataggaagcttagagaagttctctgttggcacaaaaagttctgatgatggctcaactgaagaaggaaataagcctcgagagtatgtacatatacaaggattgaaagcaaagattattaatcaagccagagacctttcagctgaggcaggtggcaaaagttctgctaagaaagatcttaccaaccagcggaacatgtttcgggatatcttggaatactttgaggatgattattctcctgaaatttcaattaagatcggtagtgattcactacagacatcaacatggtcgcagctgatacagttgaactttttgaagcactttcttggaggagggtttataaagcacatgcaggaaaatgaactccttcaggatgtcttagggttcactccaaagaaaaagtgtgtggattttgaaaatcgtctatctggtagtgaaaagaggatgtttaggtcaccaaactcagctctcaacaaagcaaggacccagcaacttaataagcagaggatgctatcggcgggtaaaaatattggccgctttgcagctaatgtgggggatgatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IFRD IFRD_C

Protein Analysis

445

Amino Acids

49.17

Weight (kDa)

6.16

Isoelectric Point (pI)

33.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27760 AT1G27760 AT1G27760
fragaria_vesca	FvH4_2g33200 FvH4_2g33200 FvH4_2g33200
malus_domestica	MD08G1085400.v1.1 MD08G1085800.v1.1 MD15G1071000.v1.1
prunus_persica	Prupe.1G423700_v2.0.a1
pyrus_communis	pycom08g07050 pycom15g06680
rosa_chinensis	RchiOBHm_Chr6g0309471
rosa_laevigata	RLG00000010563
rosa_multiflora	Rmu_sc0007283.1_g000001 Rmu_sc0022500.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159380
rosa_rugosa	Rorug06G0372200
rosa_samantha	Rh6AG485400 Rh6BG494700 Rh6CG499700 Rh6DG485800
rosa_wichuraiana	Rw6G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1112
AarI	CACCTGC	1 cut(s)	911
Acc36I	ACCTGC	1 cut(s)	911
AccB7I	CCANNNNNTGG	1 cut(s)	678
AccBSI	CCGCTC	1 cut(s)	729
AccI	GTMKAC	2 cut(s)	83, 135
AciI	CCGC	9 cut(s)	10, 32, 35, 599, 727, 736, 961, 1289, 1306
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	1 cut(s)	1303
AcsI	RAATTY	3 cut(s)	266, 662, 1014
AcuI	CTGAAG	3 cut(s)	579, 852, 1124
AfaI	GTAC	1 cut(s)	861
AfiI	CCNNNNNNNGG	2 cut(s)	678, 960
AflIII	ACRYGT	1 cut(s)	966
AgsI	TTSAA	9 cut(s)	78, 401, 433, 773, 877, 1020, 1078, 1087, 1187
AjnI	CCWGG	1 cut(s)	112
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	897
AlwI	GGATC	1 cut(s)	448
AlwNI	CAGNNNCTG	2 cut(s)	292, 602
Ama87I	CYCGRG	1 cut(s)	849
AoxI	GGCC	1 cut(s)	1303
ApeKI	GCWGC	5 cut(s)	237, 244, 743, 1063, 1313
ApoI	RAATTY	3 cut(s)	266, 662, 1014
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AseI	ATTAAT	2 cut(s)	764, 891
Asp700I	GAANNNNTTC	1 cut(s)	1137
AspLEI	GCGC	2 cut(s)	93, 112
AspS9I	GGNCC	2 cut(s)	630, 1254
AsuHPI	GGTGA	3 cut(s)	49, 761, 1218
AvaI	CYCGRG	1 cut(s)	849
AvaII	GGWCC	2 cut(s)	630, 1254
BanII	GRGCYC	1 cut(s)	208
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
BbsI	GAAGAC	1 cut(s)	701
Bbv12I	GWGCWC	1 cut(s)	208
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	5 cut(s)	249, 256, 730, 1075, 1325
BccI	CCATC	3 cut(s)	647, 651, 815
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	897
BfaI	CTAG	2 cut(s)	195, 713
BfmI	CTRYAG	2 cut(s)	648, 1043
BfuAI	ACCTGC	1 cut(s)	911
BglII	AGATCT	1 cut(s)	946
BisI	GCNGC	8 cut(s)	33, 238, 245, 600, 744, 1064, 1306, 1314
BlsI	GCNGC	8 cut(s)	34, 239, 246, 601, 745, 1065, 1307, 1315
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	2 cut(s)	630, 1254
BmeT110I	CYCGRG	1 cut(s)	849
BmgT120I	GGNCC	2 cut(s)	630, 1254
BmiI	GGNNCC	2 cut(s)	190, 1256
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	4 cut(s)	157, 292, 344, 1269
BpiI	GAAGAC	1 cut(s)	701
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	915
BsaBI	GATNNNNATC	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	897
Bsc4I	CCNNNNNNNGG	2 cut(s)	678, 960
Bse1I	ACTGG	1 cut(s)	705
Bse8I	GATNNNNATC	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	114
BseGI	GGATG	8 cut(s)	556, 662, 727, 1003, 1150, 1221, 1284, 1333
BseJI	GATNNNNATC	1 cut(s)	445
BseLI	CCNNNNNNNGG	2 cut(s)	678, 960
BseMII	CTCAG	2 cut(s)	906, 1248
BseNI	ACTGG	1 cut(s)	705
BseRI	GAGGAG	1 cut(s)	1116
BseXI	GCAGC	5 cut(s)	249, 256, 730, 1075, 1325
BseYI	CCCAGC	1 cut(s)	1257
BshFI	GGCC	1 cut(s)	1305
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	849
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	678, 960
BsmAI	GTCTC	1 cut(s)	897
BsmFI	GGGAC	1 cut(s)	392
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	1 cut(s)	1305
Bso31I	GGTCTC	1 cut(s)	897
BsoBI	CYCGRG	1 cut(s)	849
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp1407I	TGTACA	1 cut(s)	859
Bsp143I	GATC	3 cut(s)	440, 946, 1026
BspACI	CCGC	9 cut(s)	10, 32, 35, 599, 727, 736, 961, 1289, 1306
BspANI	GGCC	1 cut(s)	1305
BspCNI	CTCAG	2 cut(s)	907, 1247
BspLI	GGNNCC	2 cut(s)	190, 1256
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	1 cut(s)	448
BspTNI	GGTCTC	1 cut(s)	897
BsrBI	CCGCTC	1 cut(s)	729
BsrGI	TGTACA	1 cut(s)	859
BsrI	ACTGG	1 cut(s)	705
BssMI	GATC	3 cut(s)	440, 946, 1026
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	3 cut(s)	367, 649, 1074
Bst6I	CTCTTC	1 cut(s)	176
BstAPI	GCANNNNNTGC	1 cut(s)	1279
BstAUI	TGTACA	1 cut(s)	859
BstC8I	GCNNGC	4 cut(s)	149, 242, 357, 426
BstDEI	CTNAG	5 cut(s)	784, 915, 939, 1150, 1234
BstEII	GGTNACC	1 cut(s)	1224
BstF5I	GGATG	8 cut(s)	556, 662, 727, 1003, 1150, 1221, 1284, 1333
BstHHI	GCGC	2 cut(s)	93, 112
BstKTI	GATC	3 cut(s)	443, 949, 1029
BstMAI	GTCTC	1 cut(s)	897
BstMBI	GATC	3 cut(s)	440, 946, 1026
BstMWI	GCNNNNNNNGC	3 cut(s)	167, 752, 1279
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	970, 1123
BstPI	GGTNACC	1 cut(s)	1224
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	2 cut(s)	648, 1043
BstV1I	GCAGC	5 cut(s)	249, 256, 730, 1075, 1325
BstV2I	GAAGAC	1 cut(s)	701
BstX2I	RGATCY	2 cut(s)	440, 946
BstYI	RGATCY	2 cut(s)	440, 946
BsuRI	GGCC	1 cut(s)	1305
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	8 cut(s)	556, 662, 727, 1003, 1150, 1221, 1284, 1333
BtsIMutI	CAGTG	1 cut(s)	293
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	4 cut(s)	149, 242, 357, 426
CaiI	CAGNNNCTG	2 cut(s)	292, 602
CfoI	GCGC	2 cut(s)	93, 112
Cfr13I	GGNCC	2 cut(s)	630, 1254
Csp6I	GTAC	1 cut(s)	860
CspCI	CAANNNNNGTGG	2 cut(s)	524, 559
CviAII	CATG	5 cut(s)	341, 627, 967, 1056, 1120
CviQI	GTAC	1 cut(s)	860
DdeI	CTNAG	5 cut(s)	784, 915, 939, 1150, 1234
DpnI	GATC	3 cut(s)	442, 948, 1028
DpnII	GATC	3 cut(s)	440, 946, 1026
EaeI	YGGCCR	1 cut(s)	1303
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	897
Eco32I	GATATC	1 cut(s)	979
Eco47I	GGWCC	2 cut(s)	630, 1254
Eco53kI	GAGCTC	1 cut(s)	206
Eco57I	CTGAAG	3 cut(s)	579, 852, 1124
Eco88I	CYCGRG	1 cut(s)	849
Eco91I	GGTNACC	1 cut(s)	1224
EcoICRI	GAGCTC	1 cut(s)	206
EcoO109I	RGGNCCY	1 cut(s)	1254
EcoO65I	GGTNACC	1 cut(s)	1224
EcoRII	CCWGG	1 cut(s)	112
EcoRV	GATATC	1 cut(s)	979
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	5 cut(s)	344, 630, 970, 1059, 1123
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	5 cut(s)	340, 626, 966, 1055, 1119
FauI	CCCGC	1 cut(s)	1282
FblI	GTMKAC	2 cut(s)	83, 135
Fnu4HI	GCNGC	8 cut(s)	33, 238, 245, 600, 744, 1064, 1306, 1314
FokI	GGATG	7 cut(s)	543, 669, 734, 1010, 1157, 1228, 1291
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	8 cut(s)	33, 238, 245, 600, 744, 1064, 1306, 1314
FspBI	CTAG	2 cut(s)	195, 713
GlaI	GCGC	2 cut(s)	92, 111
GluI	GCNGC	8 cut(s)	33, 238, 245, 600, 744, 1064, 1306, 1314
GsaI	CCCAGC	1 cut(s)	1261
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	1305
HhaI	GCGC	2 cut(s)	93, 112
Hin1II	CATG	5 cut(s)	344, 630, 970, 1059, 1123
Hin6I	GCGC	2 cut(s)	91, 110
HinP1I	GCGC	2 cut(s)	91, 110
HincII	GTYRAC	2 cut(s)	84, 136
HindII	GTYRAC	2 cut(s)	84, 136
HindIII	AAGCTT	1 cut(s)	781
HinfI	GANTC	4 cut(s)	404, 446, 686, 1037
HphI	GGTGA	3 cut(s)	49, 761, 1218
Hpy166II	GTNNAC	3 cut(s)	84, 136, 1158
Hpy188I	TCNGA	4 cut(s)	97, 294, 445, 817
Hpy188III	TCNNGA	7 cut(s)	164, 438, 713, 851, 974, 1010, 1142
Hpy8I	GTNNAC	3 cut(s)	84, 136, 1158
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	603, 830, 1148
HpyCH4III	ACNGT	3 cut(s)	367, 649, 1074
HpyCH4IV	ACGT	3 cut(s)	22, 80, 576
HpyCH4V	TGCA	9 cut(s)	130, 244, 283, 300, 535, 584, 626, 1123, 1313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	167, 752, 1279
HpyF3I	CTNAG	5 cut(s)	784, 915, 939, 1150, 1234
HpySE526I	ACGT	3 cut(s)	22, 80, 576
Hsp92II	CATG	5 cut(s)	344, 630, 970, 1059, 1123
HspAI	GCGC	2 cut(s)	91, 110
Kzo9I	GATC	3 cut(s)	440, 946, 1026
Lsp1109I	GCAGC	5 cut(s)	249, 256, 730, 1075, 1325
LweI	GCATC	4 cut(s)	157, 292, 344, 1269
MaeI	CTAG	2 cut(s)	195, 713
MaeII	ACGT	3 cut(s)	22, 80, 576
MaeIII	GTNAC	1 cut(s)	1224
MalI	GATC	3 cut(s)	442, 948, 1028
MbiI	CCGCTC	1 cut(s)	729
MboI	GATC	3 cut(s)	440, 946, 1026
MboII	GAAGA	5 cut(s)	193, 413, 629, 701, 845
MflI	RGATCY	2 cut(s)	440, 946
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	6 cut(s)	266, 295, 662, 765, 1014, 1020
MlyI	GAGTC	1 cut(s)	695
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	8 cut(s)	177, 858, 910, 988, 1094, 1097, 1206, 1269
MroXI	GAANNNNTTC	1 cut(s)	1137
MseI	TTAA	8 cut(s)	231, 303, 588, 666, 764, 891, 1023, 1266
MslI	CAYNNNNRTG	1 cut(s)	1054
MspA1I	CMGCKG	4 cut(s)	599, 914, 961, 1066
MspR9I	CCNGG	1 cut(s)	114
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	3 cut(s)	167, 752, 1279
NdeII	GATC	3 cut(s)	440, 946, 1026
NlaIII	CATG	5 cut(s)	344, 630, 970, 1059, 1123
NlaIV	GGNNCC	2 cut(s)	190, 1256
NmuCI	GTSAC	1 cut(s)	1224
NspI	RCATGY	2 cut(s)	970, 1123
PaeR7I	CTCGAG	1 cut(s)	849
PaqCI	CACCTGC	1 cut(s)	911
PciI	ACATGT	1 cut(s)	966
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	1137
PfeI	GAWTC	3 cut(s)	404, 446, 1037
PflMI	CCANNNNNTGG	1 cut(s)	678
PkrI	GCNGC	8 cut(s)	34, 239, 246, 601, 745, 1065, 1307, 1315
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PpuMI	RGGWCCY	1 cut(s)	1254
PscI	ACATGT	1 cut(s)	966
PshBI	ATTAAT	2 cut(s)	764, 891
PsiI	TTATAA	1 cut(s)	1112
Psp124BI	GAGCTC	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	1254
Psp6I	CCWGG	1 cut(s)	112
PspEI	GGTNACC	1 cut(s)	1224
PspFI	CCCAGC	1 cut(s)	1257
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	190, 1256
PspPI	GGNCC	2 cut(s)	630, 1254
PspPPI	RGGWCCY	1 cut(s)	1254
PsrI	GAACNNNNNNTAC	2 cut(s)	58, 90
PstNI	CAGNNNCTG	2 cut(s)	292, 602
PsuI	RGATCY	2 cut(s)	440, 946
PvuII	CAGCTG	2 cut(s)	914, 1066
RsaI	GTAC	1 cut(s)	861
RsaNI	GTAC	1 cut(s)	860
RseI	CAYNNNNRTG	1 cut(s)	1054
SacI	GAGCTC	1 cut(s)	208
SalI	GTCGAC	2 cut(s)	82, 134
SaqAI	TTAA	8 cut(s)	231, 303, 588, 666, 764, 891, 1023, 1266
SatI	GCNGC	8 cut(s)	33, 238, 245, 600, 744, 1064, 1306, 1314
Sau3AI	GATC	3 cut(s)	440, 946, 1026
Sau96I	GGNCC	2 cut(s)	630, 1254
SchI	GAGTC	1 cut(s)	695
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	1 cut(s)	208
SfaNI	GCATC	4 cut(s)	157, 292, 344, 1269
SfcI	CTRYAG	2 cut(s)	648, 1043
Sfr274I	CTCGAG	1 cut(s)	849
SinI	GGWCC	2 cut(s)	630, 1254
SlaI	CTCGAG	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	1054
SmlI	CTYRAG	1 cut(s)	849
SmoI	CTYRAG	1 cut(s)	849
Sse9I	AATT	6 cut(s)	266, 295, 662, 765, 1014, 1020
SsiI	CCGC	9 cut(s)	10, 32, 35, 599, 727, 736, 961, 1289, 1306
SspI	AATATT	1 cut(s)	1300
SspMI	CTAG	2 cut(s)	195, 713
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	3 cut(s)	367, 649, 1074
TaiI	ACGT	3 cut(s)	25, 83, 579
TaqI	TCGA	5 cut(s)	83, 135, 165, 215, 850
TasI	AATT	6 cut(s)	266, 295, 662, 765, 1014, 1020
TatI	WGTACW	1 cut(s)	859
TauI	GCSGC	3 cut(s)	35, 602, 1308
TfiI	GAWTC	3 cut(s)	404, 446, 1037
Tru1I	TTAA	8 cut(s)	231, 303, 588, 666, 764, 891, 1023, 1266
Tru9I	TTAA	8 cut(s)	231, 303, 588, 666, 764, 891, 1023, 1266
TscAI	CASTG	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	1224
TseI	GCWGC	5 cut(s)	237, 244, 743, 1063, 1313
Tsp45I	GTSAC	1 cut(s)	1224
TspDTI	ATGAA	4 cut(s)	138, 405, 545, 1146
TspRI	CASTG	1 cut(s)	293
Van91I	CCANNNNNTGG	1 cut(s)	678
VpaK11BI	GGWCC	2 cut(s)	630, 1254
VspI	ATTAAT	2 cut(s)	764, 891
XapI	RAATTY	3 cut(s)	266, 662, 1014
XbaI	TCTAGA	1 cut(s)	712
XceI	RCATGY	2 cut(s)	970, 1123
XhoI	CTCGAG	1 cut(s)	849
XmiI	GTMKAC	2 cut(s)	83, 135
XmnI	GAANNNNTTC	1 cut(s)	1137
XspI	CTAG	2 cut(s)	195, 713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.