Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0008512

Physical Location & Seq

Genomic Coordinates Forward (+)

4852034 .. 4855705

Gene Structure 3672 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1071000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGGGAAACGTAGTTCTCAGCGTAAGAATGCTGCGATGATGGACAGCGATGATGATAATAGTAGCGTGAGTTCAACGTCAACTATGCGCTCCGATCATATATCGGTGTCTGTGAATGAAGATATGCAAGTGGATAGGGATAGTTTACTCGACCAAGCTGTAGATGCTTTGTATGAGAAGAGGGGTTCATCAAGAGAAAAAGCTTTGTCAGCAATTATTGACTCGTTTAATAGCAACTTGCAACATCAGTTTGTGGAAAAGAAGTTTGCAACGTTATTGCATCAGTGTCTGAATTGCATCAAAAAGGGTTCCTCAAAAGAGATATGTTTGGCGTCTCATGTGATCGGACTATTGGCTTTGACTGTTGGATGTGGAGACAATGCTCAGGAAATACTGGAAGAATCAGTACCTGTGATTTCACAGGCTTTCAAATCTGGATCTGAAGTTTCAAAGACATCAGCGTTACTGGAGTGTTTAGCTATTATCACTTTTGTTGGTGGTAGTGACCCAGAGCAAACAGAAAAGTCAATGCAAATTATGTGGCAAGTAGTTCATCCAAAACAGAGTTCCAATGTGATTGCAGTTAAACTGTCAGCAGCAGTAATAACCACCATGGTGTCTGCATGGTCCTTTCTTCTTACAACTGTAGAGGGTTGGAATCTTAATCCGAAAGACTGGCAAGAGTCCATAACATACTTATCTAGTCTGCTAGATAAGGATGACCGGTCCATACGTATGGCTGCTGGTGAAGCTTTGGCTTTAATTTTTGAGATTGGAAGTTTAGAGAAGTTCACTGCTGGCGCTAAAACATCAAGTGATGGCTCAACTGAAGTAGGAAACAAATCTCGGGAATATGTACATATACAAGGATTGAAAGCGAAGATTGTTAATCAAGCCAGAAACCTGTCAGCCGAAGCAGGTGGCAAAAGTTCTGCTAAAAAAGATCTTAGTAGTCAGCGGAACACGTTTCGGGATATCTTGGAATATTTTGAGGATGGTTATTCTCCTGAAATTTCGATAAAGATTGGTGGTGAATCACTACAGACATCAACGTGGTCGCAGATGATACAGTTGAACTTTTTGAAGCGTTTTCTTGGAGGAGGTTTTATCAAGCACATGCAGGAAAATGAACTCCTCCAGGATGTTCTTGGCTTCAATCCAAAGAAAAAGAATCTGTTGGAATCTGAACATCGTCTATCTGGTAGTGAAAAGAGGATGTTTAAGTCACCGAACTCGGTACAAAACAAGGCCAGGACCCAGCTGCTTAACAAGCAGCGAATGTTATCCGAGGGTAAAAATATCGGCCGCTTTGCAGCTAATTTGGGGGACGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IFRD IFRD_C

Protein Analysis

446

Amino Acids

48.95

Weight (kDa)

6.74

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IFRD	PF05004	23 - 331	4.8e-93	Interferon-related developmental regulator (IFRD)
IFRD_C	PF04836	376 - 429	1.8e-14	Interferon-related protein conserved region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008512)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27760 AT1G27760 AT1G27760
fragaria_vesca	FvH4_2g33200 FvH4_2g33200 FvH4_2g33200
malus_domestica	MD08G1085400.v1.1 MD08G1085800.v1.1 MD15G1071000.v1.1
prunus_persica	Prupe.1G423700_v2.0.a1
pyrus_communis	pycom08g07050 pycom15g06680
rosa_chinensis	RchiOBHm_Chr6g0309471
rosa_laevigata	RLG00000010563
rosa_multiflora	Rmu_sc0007283.1_g000001 Rmu_sc0022500.1_g000004
rosa_roxburghii	Rroxscaffold_7G00159380
rosa_rugosa	Rorug06G0372200
rosa_samantha	Rh6AG485400 Rh6BG494700 Rh6CG499700 Rh6DG485800
rosa_wichuraiana	Rw6G042280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	908
Acc36I	ACCTGC	1 cut(s)	908
AciI	CCGC	2 cut(s)	958, 1306
AclI	AACGTT	1 cut(s)	272
AclWI	GGATC	1 cut(s)	445
AcoI	YGGCCR	1 cut(s)	1303
AcsI	RAATTY	1 cut(s)	1011
AcuI	CTGAAG	2 cut(s)	462, 849
AcyI	GRCGYC	1 cut(s)	332
AfaI	GTAC	3 cut(s)	408, 858, 1239
AflIII	ACRYGT	1 cut(s)	963
AgeI	ACCGGT	1 cut(s)	723
AgsI	TTSAA	7 cut(s)	75, 430, 450, 874, 1075, 1084, 1156
AjnI	CCWGG	2 cut(s)	1137, 1250
AjuI	GAANNNNNNNTTGG	2 cut(s)	550, 582
AleI	CACNNNNGTG	1 cut(s)	614
AloI	GAACNNNNNNTCC	1 cut(s)	30
AluBI	AGCT	6 cut(s)	158, 203, 479, 752, 1261, 1316
AluI	AGCT	6 cut(s)	158, 203, 479, 752, 1261, 1316
Alw26I	GTCTC	2 cut(s)	339, 369
AlwI	GGATC	1 cut(s)	445
AlwNI	CAGNNNCTG	2 cut(s)	289, 410
Ama87I	CYCGRG	1 cut(s)	846
AoxI	GGCC	2 cut(s)	1248, 1303
ApeKI	GCWGC	6 cut(s)	32, 596, 740, 1261, 1273, 1313
ApoI	RAATTY	1 cut(s)	1011
AsiGI	ACCGGT	1 cut(s)	723
AspLEI	GCGC	2 cut(s)	90, 803
AspS9I	GGNCC	3 cut(s)	627, 726, 1254
AsuHPI	GGTGA	3 cut(s)	758, 1043, 1218
AvaI	CYCGRG	1 cut(s)	846
AvaII	GGWCC	3 cut(s)	627, 726, 1254
BarI	GAAGNNNNNNTAC	2 cut(s)	390, 422
BbvI	GCAGC	6 cut(s)	19, 608, 727, 1248, 1285, 1325
BccI	CCATC	3 cut(s)	34, 812, 989
BciT130I	CCWGG	2 cut(s)	1139, 1252
BcoDI	GTCTC	2 cut(s)	339, 369
BfaI	CTAG	2 cut(s)	702, 710
BfmI	CTRYAG	3 cut(s)	159, 645, 1040
BfoI	RGCGCY	1 cut(s)	804
BfuAI	ACCTGC	1 cut(s)	908
BglII	AGATCT	1 cut(s)	943
BisI	GCNGC	7 cut(s)	33, 597, 741, 1262, 1274, 1306, 1314
BlsI	GCNGC	7 cut(s)	34, 598, 742, 1263, 1275, 1307, 1315
Bme1390I	CCNGG	2 cut(s)	1139, 1252
Bme18I	GGWCC	3 cut(s)	627, 726, 1254
BmeT110I	CYCGRG	1 cut(s)	846
BmgT120I	GGNCC	3 cut(s)	627, 726, 1254
BmiI	GGNNCC	2 cut(s)	310, 1256
BmrFI	CCNGG	2 cut(s)	1139, 1252
BmsI	GCATC	4 cut(s)	154, 289, 306, 1321
BpmI	CTGGAG	2 cut(s)	488, 1121
Bpu10I	CCTNAGC	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	734
BsaHI	GRCGYC	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	612, 1287
BsaWI	WCCGGW	1 cut(s)	723
Bse118I	RCCGGY	1 cut(s)	723
Bse1I	ACTGG	3 cut(s)	399, 471, 680
BseBI	CCWGG	2 cut(s)	1139, 1252
BseDI	CCNNGG	2 cut(s)	612, 1287
BseGI	GGATG	6 cut(s)	374, 553, 724, 1000, 1147, 1221
BseMII	CTCAG	2 cut(s)	32, 398
BseNI	ACTGG	3 cut(s)	399, 471, 680
BseRI	GAGGAG	2 cut(s)	1113, 1124
BseX3I	CGGCCG	1 cut(s)	1303
BseXI	GCAGC	6 cut(s)	19, 608, 727, 1248, 1285, 1325
BseYI	CCCAGC	1 cut(s)	1257
Bsh1285I	CGRYCG	1 cut(s)	1306
BshFI	GGCC	2 cut(s)	1250, 1305
BshTI	ACCGGT	1 cut(s)	723
BsiEI	CGRYCG	1 cut(s)	1306
BsiHKCI	CYCGRG	1 cut(s)	846
BsiSI	CCGG	1 cut(s)	724
BsmAI	GTCTC	2 cut(s)	339, 369
BsmBI	CGTCTC	1 cut(s)	339
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	1250, 1305
BsoBI	CYCGRG	1 cut(s)	846
Bsp1407I	TGTACA	1 cut(s)	856
Bsp143I	GATC	4 cut(s)	94, 342, 437, 943
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	2 cut(s)	958, 1306
BspANI	GGCC	2 cut(s)	1250, 1305
BspCNI	CTCAG	2 cut(s)	31, 397
BspLI	GGNNCC	2 cut(s)	310, 1256
BspMI	ACCTGC	1 cut(s)	908
BspPI	GGATC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	723
BsrGI	TGTACA	1 cut(s)	856
BsrI	ACTGG	3 cut(s)	399, 471, 680
BssAI	RCCGGY	1 cut(s)	723
BssECI	CCNNGG	2 cut(s)	612, 1287
BssMI	GATC	4 cut(s)	94, 342, 437, 943
BssNI	GRCGYC	1 cut(s)	332
BssT1I	CCWWGG	1 cut(s)	612
Bst2UI	CCWGG	2 cut(s)	1139, 1252
Bst4CI	ACNGT	4 cut(s)	364, 591, 646, 1071
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	332
BstAUI	TGTACA	1 cut(s)	856
BstBAI	YACGTR	1 cut(s)	734
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	3 cut(s)	18, 384, 947
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	6 cut(s)	374, 553, 724, 1000, 1147, 1221
BstH2I	RGCGCY	1 cut(s)	804
BstHHI	GCGC	2 cut(s)	90, 803
BstKTI	GATC	4 cut(s)	97, 345, 440, 946
BstMAI	GTCTC	2 cut(s)	339, 369
BstMBI	GATC	4 cut(s)	94, 342, 437, 943
BstMCI	CGRYCG	1 cut(s)	1306
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 209, 749, 1270
BstNI	CCWGG	2 cut(s)	1139, 1252
BstNSI	RCATGY	1 cut(s)	1120
BstSCI	CCNGG	2 cut(s)	1137, 1250
BstSFI	CTRYAG	3 cut(s)	159, 645, 1040
BstSNI	TACGTA	1 cut(s)	734
BstV1I	GCAGC	6 cut(s)	19, 608, 727, 1248, 1285, 1325
BstX2I	RGATCY	2 cut(s)	437, 943
BstXI	CCANNNNNNTGG	1 cut(s)	736
BstYI	RGATCY	2 cut(s)	437, 943
BstZI	CGGCCG	1 cut(s)	1303
BsuRI	GGCC	2 cut(s)	1250, 1305
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	2 cut(s)	50, 63
BtsCI	GGATG	6 cut(s)	374, 553, 724, 1000, 1147, 1221
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	2 cut(s)	290, 792
BveI	ACCTGC	1 cut(s)	908
Cac8I	GCNNGC	1 cut(s)	799
CaiI	CAGNNNCTG	2 cut(s)	289, 410
CfoI	GCGC	2 cut(s)	90, 803
Cfr10I	RCCGGY	1 cut(s)	723
Cfr13I	GGNCC	3 cut(s)	627, 726, 1254
CseI	GACGC	1 cut(s)	321
Csp6I	GTAC	3 cut(s)	407, 857, 1238
CspAI	ACCGGT	1 cut(s)	723
CspCI	CAANNNNNGTGG	2 cut(s)	521, 556
CviAII	CATG	4 cut(s)	338, 613, 624, 1117
CviQI	GTAC	3 cut(s)	407, 857, 1238
DdeI	CTNAG	3 cut(s)	18, 384, 947
DpnI	GATC	4 cut(s)	96, 344, 439, 945
DpnII	GATC	4 cut(s)	94, 342, 437, 943
EaeI	YGGCCR	1 cut(s)	1303
EagI	CGGCCG	1 cut(s)	1303
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
EclXI	CGGCCG	1 cut(s)	1303
Eco105I	TACGTA	1 cut(s)	734
Eco130I	CCWWGG	1 cut(s)	612
Eco32I	GATATC	1 cut(s)	976
Eco47I	GGWCC	3 cut(s)	627, 726, 1254
Eco52I	CGGCCG	1 cut(s)	1303
Eco57I	CTGAAG	2 cut(s)	462, 849
Eco88I	CYCGRG	1 cut(s)	846
EcoO109I	RGGNCCY	1 cut(s)	1254
EcoRII	CCWGG	2 cut(s)	1137, 1250
EcoRV	GATATC	1 cut(s)	976
EcoT14I	CCWWGG	1 cut(s)	612
ErhI	CCWWGG	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	339
FaeI	CATG	4 cut(s)	341, 616, 627, 1120
FatI	CATG	4 cut(s)	337, 612, 623, 1116
Fnu4HI	GCNGC	7 cut(s)	33, 597, 741, 1262, 1274, 1306, 1314
FokI	GGATG	6 cut(s)	381, 540, 731, 1007, 1154, 1228
Fsp4HI	GCNGC	7 cut(s)	33, 597, 741, 1262, 1274, 1306, 1314
FspBI	CTAG	2 cut(s)	702, 710
GlaI	GCGC	2 cut(s)	89, 802
GluI	GCNGC	7 cut(s)	33, 597, 741, 1262, 1274, 1306, 1314
GsaI	CCCAGC	1 cut(s)	1261
GsuI	CTGGAG	2 cut(s)	488, 1121
HaeII	RGCGCY	1 cut(s)	804
HaeIII	GGCC	2 cut(s)	1250, 1305
HapII	CCGG	1 cut(s)	724
HgaI	GACGC	1 cut(s)	321
HhaI	GCGC	2 cut(s)	90, 803
Hin1I	GRCGYC	1 cut(s)	332
Hin1II	CATG	4 cut(s)	341, 616, 627, 1120
Hin6I	GCGC	2 cut(s)	88, 801
HinP1I	GCGC	2 cut(s)	88, 801
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HindIII	AAGCTT	2 cut(s)	201, 750
HinfI	GANTC	7 cut(s)	221, 401, 658, 683, 1034, 1171, 1181
HpaII	CCGG	1 cut(s)	724
HphI	GGTGA	3 cut(s)	758, 1043, 1218
Hpy166II	GTNNAC	3 cut(s)	81, 146, 792
Hpy188I	TCNGA	7 cut(s)	94, 291, 347, 442, 669, 1186, 1288
Hpy188III	TCNNGA	6 cut(s)	192, 386, 435, 848, 971, 1007
Hpy8I	GTNNAC	3 cut(s)	81, 146, 792
HpyCH4III	ACNGT	4 cut(s)	364, 591, 646, 1071
HpyCH4IV	ACGT	6 cut(s)	10, 77, 272, 733, 965, 1052
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 209, 749, 1270
HpyF3I	CTNAG	3 cut(s)	18, 384, 947
HpySE526I	ACGT	6 cut(s)	10, 77, 272, 733, 965, 1052
Hsp92I	GRCGYC	1 cut(s)	332
Hsp92II	CATG	4 cut(s)	341, 616, 627, 1120
HspAI	GCGC	2 cut(s)	88, 801
Kzo9I	GATC	4 cut(s)	94, 342, 437, 943
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	6 cut(s)	19, 608, 727, 1248, 1285, 1325
LweI	GCATC	4 cut(s)	154, 289, 306, 1321
MaeI	CTAG	2 cut(s)	702, 710
MaeII	ACGT	6 cut(s)	10, 77, 272, 733, 965, 1052
MaeIII	GTNAC	3 cut(s)	462, 503, 1224
MalI	GATC	4 cut(s)	96, 344, 439, 945
MboI	GATC	4 cut(s)	94, 342, 437, 943
MboII	GAAGA	5 cut(s)	131, 190, 410, 626, 892
MflI	RGATCY	2 cut(s)	437, 943
MluCI	AATT	6 cut(s)	213, 292, 534, 762, 1011, 1318
MlyI	GAGTC	2 cut(s)	215, 692
MmeI	TCCRAC	3 cut(s)	346, 635, 1158
MnlI	CCTC	9 cut(s)	174, 322, 643, 985, 1091, 1094, 1145, 1206, 1282
MseI	TTAA	7 cut(s)	228, 585, 663, 761, 888, 1221, 1266
MslI	CAYNNNNRTG	3 cut(s)	614, 734, 1051
MspA1I	CMGCKG	2 cut(s)	958, 1261
MspI	CCGG	1 cut(s)	724
MspR9I	CCNGG	2 cut(s)	1139, 1252
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	2 cut(s)	1139, 1252
MwoI	GCNNNNNNNGC	4 cut(s)	164, 209, 749, 1270
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	4 cut(s)	94, 342, 437, 943
NlaIII	CATG	4 cut(s)	341, 616, 627, 1120
NlaIV	GGNNCC	2 cut(s)	310, 1256
NmuCI	GTSAC	2 cut(s)	503, 1224
NspI	RCATGY	1 cut(s)	1120
OliI	CACNNNNGTG	1 cut(s)	614
PaqCI	CACCTGC	1 cut(s)	908
PctI	GAATGC	1 cut(s)	34
PfeI	GAWTC	5 cut(s)	401, 658, 1034, 1171, 1181
PfoI	TCCNGGA	1 cut(s)	1137
PinAI	ACCGGT	1 cut(s)	723
PkrI	GCNGC	7 cut(s)	34, 598, 742, 1263, 1275, 1307, 1315
PleI	GAGTC	2 cut(s)	215, 691
PpsI	GAGTC	2 cut(s)	215, 691
Ppu21I	YACGTR	1 cut(s)	734
PpuMI	RGGWCCY	1 cut(s)	1254
Psp1406I	AACGTT	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	1254
Psp6I	CCWGG	2 cut(s)	1137, 1250
PspFI	CCCAGC	1 cut(s)	1257
PspGI	CCWGG	2 cut(s)	1137, 1250
PspN4I	GGNNCC	2 cut(s)	310, 1256
PspPI	GGNCC	3 cut(s)	627, 726, 1254
PspPPI	RGGWCCY	1 cut(s)	1254
PsrI	GAACNNNNNNTAC	2 cut(s)	55, 87
PstNI	CAGNNNCTG	2 cut(s)	289, 410
PsuI	RGATCY	2 cut(s)	437, 943
PvuII	CAGCTG	1 cut(s)	1261
RsaI	GTAC	3 cut(s)	408, 858, 1239
RsaNI	GTAC	3 cut(s)	407, 857, 1238
RseI	CAYNNNNRTG	3 cut(s)	614, 734, 1051
SaqAI	TTAA	7 cut(s)	228, 585, 663, 761, 888, 1221, 1266
SatI	GCNGC	7 cut(s)	33, 597, 741, 1262, 1274, 1306, 1314
Sau3AI	GATC	4 cut(s)	94, 342, 437, 943
Sau96I	GGNCC	3 cut(s)	627, 726, 1254
SchI	GAGTC	2 cut(s)	215, 692
ScrFI	CCNGG	2 cut(s)	1139, 1252
SfaNI	GCATC	4 cut(s)	154, 289, 306, 1321
SfcI	CTRYAG	3 cut(s)	159, 645, 1040
SinI	GGWCC	3 cut(s)	627, 726, 1254
SmiMI	CAYNNNNRTG	3 cut(s)	614, 734, 1051
SnaBI	TACGTA	1 cut(s)	734
Sse9I	AATT	6 cut(s)	213, 292, 534, 762, 1011, 1318
SsiI	CCGC	2 cut(s)	958, 1306
SspI	AATATT	1 cut(s)	986
SspMI	CTAG	2 cut(s)	702, 710
StyD4I	CCNGG	2 cut(s)	1137, 1250
StyI	CCWWGG	1 cut(s)	612
TaaI	ACNGT	4 cut(s)	364, 591, 646, 1071
TaiI	ACGT	6 cut(s)	13, 80, 275, 736, 968, 1055
TaqI	TCGA	2 cut(s)	150, 1016
TasI	AATT	6 cut(s)	213, 292, 534, 762, 1011, 1318
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	1 cut(s)	1308
TfiI	GAWTC	5 cut(s)	401, 658, 1034, 1171, 1181
Tru1I	TTAA	7 cut(s)	228, 585, 663, 761, 888, 1221, 1266
Tru9I	TTAA	7 cut(s)	228, 585, 663, 761, 888, 1221, 1266
TscAI	CASTG	2 cut(s)	290, 799
TseFI	GTSAC	2 cut(s)	503, 1224
TseI	GCWGC	6 cut(s)	32, 596, 740, 1261, 1273, 1313
Tsp45I	GTSAC	2 cut(s)	503, 1224
TspDTI	ATGAA	4 cut(s)	132, 177, 542, 1143
TspRI	CASTG	2 cut(s)	290, 799
VpaK11BI	GGWCC	3 cut(s)	627, 726, 1254
XapI	RAATTY	1 cut(s)	1011
XceI	RCATGY	1 cut(s)	1120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1145
XspI	CTAG	2 cut(s)	702, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.