RLG00000010563
ERF Family

Interferon-related developmental regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0008512
Physical Location & Seq
Forward (+)
2652354 .. 2655381
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010563

Sequence Viewer

Length: 1341 bp
ATGGGAAAGCGGAATAATCAACGTAAGAATGCGGCGGCGGTGATGTTGGATAGCGATGACGATAATAGTAGCGTGAGTTCAACGTCGACTATGCGCTCTGACCTTATGTTTGCGCCAGGGAATGATGAAGTGCAAGTCGACAAGGATAGCTTGCTTGACCAAGCTCTCGATGCTCTCTATGAGAAGAGGGGTTCCACTAGGGAAAAAGCTCTGGCTTCAATTGTGGAAGCGTTTAATAGCAGCTTGCAGCATGAGTTTGTGGAAAAGAAATTTGCCACTTTATTGCATCAGTGTCTGAATTGCATTAAAAAGGGTTCGTCCAAAGAGATATGCTTGGCATCTCATGTGATTGGATTGCTGGCGTTGACTGTTGGTTGTGGGGACAATGCTAATGAAATGCTTGAAGAATCCTTACCTGTGATTTCGCAGGCTTTCAAATCTGGATCTGAACCCACAAAGACAATAGCGTTGCTGGAGTGTTTAGCTATCATCACTTTCGTTGGTGGTAATGACCCAGAGCAAACAGAAAAATCAATGCAAGTTATGTGGCAAGTGGTTCATCCAAAACTGAAATCAAACGTGGTTGCAGTTAAACCTTCAGCGGCTGTAATAACTACGATGGTGTTTGCATGGTCCTTTCTTCTTACAACTGTAGATGGATGGAAATTTAATCCCAAAGATTGGCAAGAGTCCATATCATATTTGTCTAGTCTTCTAGACAAGGATGACCGCTCTGTGCGGATAGCTGCTGGTGAAGCTCTGGCATTAATTTTTGAAATAGGAAGCTTAGAGAAGTTCTCTGTTGGCACAAAAAGTTCTGATGATGGCTCAACTGAAGAAGGAAATAAGCCTCGAGAGTATGTACATATACAAGGATTGAAAGCAAAGATTATTAGTCAAGCCAGAGACCTTTCAGCTGAGGCAGGTGGCAAAAGTTCTGCTAAGAAAGATCTTACCAACCAGCGGAACATGTTTCGGGATATCTTGGAATACTTTGAGGATGATTATTCTCCTGAAATTTCAATTAAGATCGGCAGTGATTCACTACAGACATCAACATGGTCGCAGCTGATACAGTTGAACTTTTTGAAGCACTTTCTTGGAGGAGGGTTTATAAAGCACATGCAGGAAAACGAACTCCTTCAGGATGTCTTAGGGTTCACTCCAAAGAAGAAGTGTGTGGATTTTGAAAATCGTCTATCCGGTAGTGAAAAGAGGATGTTTAGGTCACCAAACTCAGCTCTCAACAAAGCAAGGACCCAGCAACTTAATAAGCAGAGGATGTTATCAGCGGGTAAAAATATTGGCCGCTTTGCGGCTAATGTGGGGGATGATGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IFRD IFRD_C

Protein Analysis

447

Amino Acids

49.21

Weight (kDa)

6.07

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IFRD PF05004 25 - 333 8.5e-95 Interferon-related developmental regulator (IFRD)
IFRD_C PF04836 378 - 430 2.3e-14 Interferon-related protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1115
AarI CACCTGC 1 cut(s) 914
Acc36I ACCTGC 1 cut(s) 914
AccB7I CCANNNNNTGG 1 cut(s) 681
AccBSI CCGCTC 1 cut(s) 732
AccI GTMKAC 2 cut(s) 86, 138
AclWI GGATC 1 cut(s) 451
AcoI YGGCCR 1 cut(s) 1306
AcsI RAATTY 3 cut(s) 269, 665, 1017
AcuI CTGAAG 3 cut(s) 582, 855, 1127
AfaI GTAC 1 cut(s) 864
AfiI CCNNNNNNNGG 3 cut(s) 681, 963, 1315
AflIII ACRYGT 1 cut(s) 969
AjnI CCWGG 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 900
AlwI GGATC 1 cut(s) 451
AlwNI CAGNNNCTG 2 cut(s) 295, 605
Ama87I CYCGRG 1 cut(s) 852
AoxI GGCC 1 cut(s) 1306
ApeKI GCWGC 4 cut(s) 240, 247, 746, 1066
ApoI RAATTY 3 cut(s) 269, 665, 1017
ArsI GACNNNNNNTTYG 2 cut(s) 92, 124
AseI ATTAAT 1 cut(s) 767
Asp700I GAANNNNTTC 1 cut(s) 1140
AspLEI GCGC 2 cut(s) 96, 115
AspS9I GGNCC 2 cut(s) 633, 1257
AsuHPI GGTGA 3 cut(s) 52, 764, 1221
AvaI CYCGRG 1 cut(s) 852
AvaII GGWCC 2 cut(s) 633, 1257
BarI GAAGNNNNNNTAC 2 cut(s) 396, 428
BbsI GAAGAC 1 cut(s) 704
BbvCI CCTCAGC 1 cut(s) 918
BbvI GCAGC 4 cut(s) 252, 259, 733, 1078
BccI CCATC 4 cut(s) 613, 650, 654, 818
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 900
BfaI CTAG 3 cut(s) 198, 708, 716
BfmI CTRYAG 2 cut(s) 651, 1046
BfuAI ACCTGC 1 cut(s) 914
BglII AGATCT 1 cut(s) 949
BisI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 1067, 1309, 1317
BlsI GCNGC 9 cut(s) 34, 37, 242, 249, 604, 748, 1068, 1310, 1318
Bme1390I CCNGG 1 cut(s) 117
Bme18I GGWCC 2 cut(s) 633, 1257
BmeT110I CYCGRG 1 cut(s) 852
BmgT120I GGNCC 2 cut(s) 633, 1257
BmiI GGNNCC 2 cut(s) 193, 1259
BmrFI CCNGG 1 cut(s) 117
BmsI GCATC 3 cut(s) 160, 295, 347
BpiI GAAGAC 1 cut(s) 704
BplI GAGNNNNNCTC 2 cut(s) 782, 814
BpmI CTGGAG 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 918
BsaI GGTCTC 1 cut(s) 900
BsaJI CCNNGG 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 1202
Bsc4I CCNNNNNNNGG 3 cut(s) 681, 963, 1315
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 116
BseGI GGATG 8 cut(s) 559, 665, 730, 1006, 1153, 1224, 1287, 1336
BseLI CCNNNNNNNGG 3 cut(s) 681, 963, 1315
BseMII CTCAG 2 cut(s) 909, 1251
BseRI GAGGAG 1 cut(s) 1119
BseXI GCAGC 4 cut(s) 252, 259, 733, 1078
BseYI CCCAGC 1 cut(s) 1260
BshFI GGCC 1 cut(s) 1308
BsiHKCI CYCGRG 1 cut(s) 852
BsiSI CCGG 1 cut(s) 1203
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 3 cut(s) 681, 963, 1315
BsmAI GTCTC 1 cut(s) 900
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 34
BsnI GGCC 1 cut(s) 1308
Bso31I GGTCTC 1 cut(s) 900
BsoBI CYCGRG 1 cut(s) 852
Bsp1407I TGTACA 1 cut(s) 862
Bsp143I GATC 3 cut(s) 443, 949, 1029
BspANI GGCC 1 cut(s) 1308
BspCNI CTCAG 2 cut(s) 910, 1250
BspLI GGNNCC 2 cut(s) 193, 1259
BspMI ACCTGC 1 cut(s) 914
BspPI GGATC 1 cut(s) 451
BspTNI GGTCTC 1 cut(s) 900
BsrBI CCGCTC 1 cut(s) 732
BsrGI TGTACA 1 cut(s) 862
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 3 cut(s) 443, 949, 1029
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 370, 652, 1077
Bst6I CTCTTC 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 862
BstC8I GCNNGC 4 cut(s) 152, 245, 360, 429
BstDEI CTNAG 5 cut(s) 787, 918, 942, 1153, 1237
BstEII GGTNACC 1 cut(s) 1227
BstF5I GGATG 8 cut(s) 559, 665, 730, 1006, 1153, 1224, 1287, 1336
BstHHI GCGC 2 cut(s) 96, 115
BstKTI GATC 3 cut(s) 446, 952, 1032
BstMAI GTCTC 1 cut(s) 900
BstMBI GATC 3 cut(s) 443, 949, 1029
BstMWI GCNNNNNNNGC 2 cut(s) 170, 755
BstNI CCWGG 1 cut(s) 117
BstNSI RCATGY 2 cut(s) 973, 1126
BstPI GGTNACC 1 cut(s) 1227
BstSCI CCNGG 1 cut(s) 115
BstSFI CTRYAG 2 cut(s) 651, 1046
BstV1I GCAGC 4 cut(s) 252, 259, 733, 1078
BstV2I GAAGAC 1 cut(s) 704
BstX2I RGATCY 2 cut(s) 443, 949
BstYI RGATCY 2 cut(s) 443, 949
BsuRI GGCC 1 cut(s) 1308
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 8 cut(s) 559, 665, 730, 1006, 1153, 1224, 1287, 1336
BtsI GCAGTG 1 cut(s) 1042
BtsIMutI CAGTG 2 cut(s) 296, 1042
BveI ACCTGC 1 cut(s) 914
Cac8I GCNNGC 4 cut(s) 152, 245, 360, 429
CaiI CAGNNNCTG 2 cut(s) 295, 605
CfoI GCGC 2 cut(s) 96, 115
Cfr13I GGNCC 2 cut(s) 633, 1257
Csp6I GTAC 1 cut(s) 863
CspCI CAANNNNNGTGG 2 cut(s) 527, 562
CviAII CATG 6 cut(s) 251, 344, 630, 970, 1059, 1123
CviQI GTAC 1 cut(s) 863
DdeI CTNAG 5 cut(s) 787, 918, 942, 1153, 1237
DpnI GATC 3 cut(s) 445, 951, 1031
DpnII GATC 3 cut(s) 443, 949, 1029
EaeI YGGCCR 1 cut(s) 1306
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 900
Eco32I GATATC 1 cut(s) 982
Eco47I GGWCC 2 cut(s) 633, 1257
Eco57I CTGAAG 3 cut(s) 582, 855, 1127
Eco88I CYCGRG 1 cut(s) 852
Eco91I GGTNACC 1 cut(s) 1227
EcoO109I RGGNCCY 1 cut(s) 1257
EcoO65I GGTNACC 1 cut(s) 1227
EcoRII CCWGG 1 cut(s) 115
EcoRV GATATC 1 cut(s) 982
FaeI CATG 6 cut(s) 254, 347, 633, 973, 1062, 1126
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FaqI GGGAC 1 cut(s) 395
FatI CATG 6 cut(s) 250, 343, 629, 969, 1058, 1122
FauI CCCGC 1 cut(s) 1285
FblI GTMKAC 2 cut(s) 86, 138
Fnu4HI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 1067, 1309, 1317
FokI GGATG 7 cut(s) 546, 672, 737, 1013, 1160, 1231, 1294
Fsp4HI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 1067, 1309, 1317
FspBI CTAG 3 cut(s) 198, 708, 716
GlaI GCGC 2 cut(s) 95, 114
GluI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 1067, 1309, 1317
GsaI CCCAGC 1 cut(s) 1264
GsuI CTGGAG 1 cut(s) 494
HaeIII GGCC 1 cut(s) 1308
HapII CCGG 1 cut(s) 1203
HhaI GCGC 2 cut(s) 96, 115
Hin1II CATG 6 cut(s) 254, 347, 633, 973, 1062, 1126
Hin6I GCGC 2 cut(s) 94, 113
HinP1I GCGC 2 cut(s) 94, 113
HincII GTYRAC 3 cut(s) 87, 139, 366
HindII GTYRAC 3 cut(s) 87, 139, 366
HindIII AAGCTT 1 cut(s) 784
HinfI GANTC 3 cut(s) 407, 689, 1040
HpaII CCGG 1 cut(s) 1203
HphI GGTGA 3 cut(s) 52, 764, 1221
Hpy166II GTNNAC 4 cut(s) 87, 139, 366, 1161
Hpy188I TCNGA 4 cut(s) 100, 297, 448, 820
Hpy188III TCNNGA 7 cut(s) 167, 441, 716, 854, 977, 1013, 1145
Hpy8I GTNNAC 4 cut(s) 87, 139, 366, 1161
Hpy99I CGWCG 1 cut(s) 88
HpyAV CCTTC 3 cut(s) 606, 833, 1151
HpyCH4III ACNGT 3 cut(s) 370, 652, 1077
HpyCH4IV ACGT 3 cut(s) 22, 83, 579
HpyCH4V TGCA 8 cut(s) 133, 247, 286, 303, 538, 587, 629, 1126
HpyF10VI GCNNNNNNNGC 2 cut(s) 170, 755
HpyF3I CTNAG 5 cut(s) 787, 918, 942, 1153, 1237
HpySE526I ACGT 3 cut(s) 22, 83, 579
Hsp92II CATG 6 cut(s) 254, 347, 633, 973, 1062, 1126
HspAI GCGC 2 cut(s) 94, 113
Kzo9I GATC 3 cut(s) 443, 949, 1029
Lsp1109I GCAGC 4 cut(s) 252, 259, 733, 1078
LweI GCATC 3 cut(s) 160, 295, 347
MaeI CTAG 3 cut(s) 198, 708, 716
MaeII ACGT 3 cut(s) 22, 83, 579
MaeIII GTNAC 1 cut(s) 1227
MalI GATC 3 cut(s) 445, 951, 1031
MbiI CCGCTC 1 cut(s) 732
MboI GATC 3 cut(s) 443, 949, 1029
MboII GAAGA 6 cut(s) 196, 416, 632, 704, 848, 1183
MfeI CAATTG 1 cut(s) 219
MflI RGATCY 2 cut(s) 443, 949
MluCI AATT 7 cut(s) 219, 269, 298, 665, 768, 1017, 1023
MlyI GAGTC 1 cut(s) 698
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 8 cut(s) 180, 861, 913, 991, 1097, 1100, 1209, 1272
MroXI GAANNNNTTC 1 cut(s) 1140
MseI TTAA 7 cut(s) 234, 306, 591, 669, 767, 1026, 1269
MslI CAYNNNNRTG 1 cut(s) 1057
MspA1I CMGCKG 5 cut(s) 602, 917, 964, 1069, 1292
MspI CCGG 1 cut(s) 1203
MspR9I CCNGG 1 cut(s) 117
MunI CAATTG 1 cut(s) 219
Mva1269I GAATGC 1 cut(s) 34
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 170, 755
NdeII GATC 3 cut(s) 443, 949, 1029
NlaIII CATG 6 cut(s) 254, 347, 633, 973, 1062, 1126
NlaIV GGNNCC 2 cut(s) 193, 1259
NmuCI GTSAC 1 cut(s) 1227
NspI RCATGY 2 cut(s) 973, 1126
PaeR7I CTCGAG 1 cut(s) 852
PaqCI CACCTGC 1 cut(s) 914
PciI ACATGT 1 cut(s) 969
PctI GAATGC 1 cut(s) 34
PdmI GAANNNNTTC 1 cut(s) 1140
PfeI GAWTC 2 cut(s) 407, 1040
PflMI CCANNNNNTGG 1 cut(s) 681
PkrI GCNGC 9 cut(s) 34, 37, 242, 249, 604, 748, 1068, 1310, 1318
PleI GAGTC 1 cut(s) 697
PpsI GAGTC 1 cut(s) 697
PpuMI RGGWCCY 1 cut(s) 1257
PscI ACATGT 1 cut(s) 969
PshBI ATTAAT 1 cut(s) 767
PsiI TTATAA 1 cut(s) 1115
Psp5II RGGWCCY 1 cut(s) 1257
Psp6I CCWGG 1 cut(s) 115
PspEI GGTNACC 1 cut(s) 1227
PspFI CCCAGC 1 cut(s) 1260
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 193, 1259
PspPI GGNCC 2 cut(s) 633, 1257
PspPPI RGGWCCY 1 cut(s) 1257
PsrI GAACNNNNNNTAC 2 cut(s) 61, 93
PstNI CAGNNNCTG 2 cut(s) 295, 605
PsuI RGATCY 2 cut(s) 443, 949
PvuII CAGCTG 2 cut(s) 917, 1069
RsaI GTAC 1 cut(s) 864
RsaNI GTAC 1 cut(s) 863
RseI CAYNNNNRTG 1 cut(s) 1057
SalI GTCGAC 2 cut(s) 85, 137
SaqAI TTAA 7 cut(s) 234, 306, 591, 669, 767, 1026, 1269
SatI GCNGC 9 cut(s) 33, 36, 241, 248, 603, 747, 1067, 1309, 1317
Sau3AI GATC 3 cut(s) 443, 949, 1029
Sau96I GGNCC 2 cut(s) 633, 1257
SchI GAGTC 1 cut(s) 698
ScrFI CCNGG 1 cut(s) 117
SfaNI GCATC 3 cut(s) 160, 295, 347
SfcI CTRYAG 2 cut(s) 651, 1046
Sfr274I CTCGAG 1 cut(s) 852
SinI GGWCC 2 cut(s) 633, 1257
SlaI CTCGAG 1 cut(s) 852
SmiMI CAYNNNNRTG 1 cut(s) 1057
SmlI CTYRAG 1 cut(s) 852
SmoI CTYRAG 1 cut(s) 852
Sse9I AATT 7 cut(s) 219, 269, 298, 665, 768, 1017, 1023
SspI AATATT 1 cut(s) 1303
SspMI CTAG 3 cut(s) 198, 708, 716
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 3 cut(s) 370, 652, 1077
TaiI ACGT 3 cut(s) 25, 86, 582
TaqI TCGA 4 cut(s) 86, 138, 168, 853
TasI AATT 7 cut(s) 219, 269, 298, 665, 768, 1017, 1023
TatI WGTACW 1 cut(s) 862
TauI GCSGC 5 cut(s) 35, 38, 605, 1311, 1319
TfiI GAWTC 2 cut(s) 407, 1040
Tru1I TTAA 7 cut(s) 234, 306, 591, 669, 767, 1026, 1269
Tru9I TTAA 7 cut(s) 234, 306, 591, 669, 767, 1026, 1269
TscAI CASTG 2 cut(s) 296, 1042
TseFI GTSAC 1 cut(s) 1227
TseI GCWGC 4 cut(s) 240, 247, 746, 1066
Tsp45I GTSAC 1 cut(s) 1227
TspDTI ATGAA 3 cut(s) 141, 408, 548
TspRI CASTG 2 cut(s) 296, 1042
Van91I CCANNNNNTGG 1 cut(s) 681
VpaK11BI GGWCC 2 cut(s) 633, 1257
VspI ATTAAT 1 cut(s) 767
XapI RAATTY 3 cut(s) 269, 665, 1017
XbaI TCTAGA 1 cut(s) 715
XceI RCATGY 2 cut(s) 973, 1126
XhoI CTCGAG 1 cut(s) 852
XmiI GTMKAC 2 cut(s) 86, 138
XmnI GAANNNNTTC 1 cut(s) 1140
XspI CTAG 3 cut(s) 198, 708, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.