Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015234

Physical Location & Seq

Genomic Coordinates Reverse (-)

10013434 .. 10014256

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCAAGGAACGATTTCTTGTGCAAGAAATTATAACATGACGACAACCGTCGGGGAATCTCTGCGGCCGCTATCGCTTAAAACGCAGGGAAACGGCGAGAGAGTTCGGATGGTGGTGGAGGAGAACGCGGTGATTGTGATTGGACGGAGAGGATGTTGCATGTGTCATGTGGTGAGGAGGCTGCTTCTTGGACTTGGAGTGAATCCGGCGGTCCTTGAGATTGATGAGGAGAGGGAAGATGAAGTTTTGAGTGAGTTGGAGAATATTGGAGTTCAAGGCGGCGGAGGTACGGTGAAGTTACCGGCGGTTTATGTAGGAGGGAGGTTGTTTGGAGGGTTAGATAGGGTTATGGCTACTCATATCTCCGGTGAGTTAGTTCCAATTCTTAAGGAAGTTGGGGCTCTGTGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009987 GO:0010033 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

137

Amino Acids

14.76

Weight (kDa)

5.71

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	44 - 109	1.2e-08	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28480
fragaria_vesca	FvH4_3g08470
malus_domestica	MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica	Prupe.4G053500_v2.0.a1
pyrus_communis	pycom10g24110
rosa_chinensis	RchiOBHm_Chr5g0009361
rosa_laevigata	RLG00000031655
rosa_multiflora	Rmu_sc0002711.1_g000021
rosa_roxburghii	Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa	Rorug04G0442000
rosa_samantha	Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana	Rw5G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccII	CGCG	1 cut(s)	128
AciI	CCGC	7 cut(s)	64, 68, 128, 209, 279, 282, 305
AcoI	YGGCCR	1 cut(s)	65
AfaI	GTAC	1 cut(s)	289
AflII	CTTAAG	1 cut(s)	386
AgsI	TTSAA	1 cut(s)	275
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	181
Asp700I	GAANNNNTTC	1 cut(s)	13
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	4 cut(s)	142, 184, 304, 380
AvaII	GGWCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	1 cut(s)	103
BceAI	ACGGC	1 cut(s)	109
BfrI	CTTAAG	1 cut(s)	386
BisI	GCNGC	4 cut(s)	65, 68, 182, 280
BlsI	GCNGC	4 cut(s)	66, 69, 183, 281
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BoxI	GACNNNNGTC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	236
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	139, 169, 276, 306
Bse118I	RCCGGY	1 cut(s)	301
BseGI	GGATG	2 cut(s)	114, 158
BseRI	GAGGAG	3 cut(s)	134, 190, 242
BseX3I	CGGCCG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	128
Bsh1285I	CGRYCG	1 cut(s)	68
BshFI	GGCC	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	206, 302, 366
BsnI	GGCC	1 cut(s)	67
Bsp1286I	GDGCHC	1 cut(s)	403
BspACI	CCGC	7 cut(s)	64, 68, 128, 209, 279, 282, 305
BspANI	GGCC	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	128
BspTI	CTTAAG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	301
Bst4CI	ACNGT	2 cut(s)	49, 292
BstAFI	CTTAAG	1 cut(s)	386
BstF5I	GGATG	2 cut(s)	114, 158
BstFNI	CGCG	1 cut(s)	128
BstMCI	CGRYCG	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 82
BstNSI	RCATGY	1 cut(s)	163
BstPAI	GACNNNNGTC	1 cut(s)	47
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	1 cut(s)	168
BstZI	CGGCCG	1 cut(s)	65
BsuRI	GGCC	1 cut(s)	67
BtsCI	GGATG	2 cut(s)	114, 158
CciNI	GCGGCCGC	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	3 cut(s)	37, 160, 167
CviJI	RGCY	4 cut(s)	67, 181, 353, 401
CviKI_1	RGCY	4 cut(s)	67, 181, 353, 401
CviQI	GTAC	1 cut(s)	288
EaeI	YGGCCR	1 cut(s)	65
EagI	CGGCCG	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	297
EclXI	CGGCCG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	211
Eco52I	CGGCCG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	403
FaeI	CATG	3 cut(s)	40, 163, 170
FaiI	YATR	7 cut(s)	33, 38, 161, 168, 312, 350, 360
FatI	CATG	3 cut(s)	36, 159, 166
Fnu4HI	GCNGC	4 cut(s)	65, 68, 182, 280
FokI	GGATG	2 cut(s)	121, 165
FriOI	GRGCYC	1 cut(s)	403
Fsp4HI	GCNGC	4 cut(s)	65, 68, 182, 280
GluI	GCNGC	4 cut(s)	65, 68, 182, 280
HaeIII	GGCC	1 cut(s)	67
HapII	CCGG	3 cut(s)	206, 302, 366
Hin1II	CATG	3 cut(s)	40, 163, 170
HinfI	GANTC	2 cut(s)	56, 202
HpaII	CCGG	3 cut(s)	206, 302, 366
HphI	GGTGA	4 cut(s)	142, 184, 304, 380
Hpy188I	TCNGA	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	49, 292
HpyCH4V	TGCA	3 cut(s)	4, 23, 159
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 82
Hsp92II	CATG	3 cut(s)	40, 163, 170
LpnPI	CCDG	4 cut(s)	71, 219, 315, 379
Lsp1109I	GCAGC	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	297
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	2 cut(s)	28, 381
MmeI	TCCRAC	1 cut(s)	237
MroXI	GAANNNNTTC	1 cut(s)	13
MseI	TTAA	2 cut(s)	78, 387
MspCI	CTTAAG	1 cut(s)	386
MspI	CCGG	3 cut(s)	206, 302, 366
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	73, 82
NlaIII	CATG	3 cut(s)	40, 163, 170
NotI	GCGGCCGC	1 cut(s)	65
NspI	RCATGY	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	56, 202
PkrI	GCNGC	4 cut(s)	66, 69, 183, 281
PshAI	GACNNNNGTC	1 cut(s)	47
PsiI	TTATAA	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	211
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	78, 387
SatI	GCNGC	4 cut(s)	65, 68, 182, 280
Sau96I	GGNCC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	2 cut(s)	289, 326
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	2 cut(s)	215, 386
SmoI	CTYRAG	2 cut(s)	215, 386
Sse9I	AATT	2 cut(s)	28, 381
SsiI	CCGC	7 cut(s)	64, 68, 128, 209, 279, 282, 305
SspI	AATATT	1 cut(s)	265
TaaI	ACNGT	2 cut(s)	49, 292
TasI	AATT	2 cut(s)	28, 381
TauI	GCSGC	3 cut(s)	67, 70, 282
TfiI	GAWTC	2 cut(s)	56, 202
Tru1I	TTAA	2 cut(s)	78, 387
Tru9I	TTAA	2 cut(s)	78, 387
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	160
Vha464I	CTTAAG	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	211
XceI	RCATGY	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.