Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015234

Physical Location & Seq

Genomic Coordinates Forward (+)

88236447 .. 88236881

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00066730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCAAGCAATTCCATACGGATCGTGGGCGCCAGATGCCCCGGCGCTGCACGTTTCGACACGGGAGGAGGTTTCGTTATCTTCTCCCGTGTCGACGGTCGCAGCTACCGTTCAAAAGCTGGTATCGGAGAATGCGGTTATCGTCGTTGGGAGGCGCGGCTGCTGCATGAGCCACGTGGTGACGCGGTTGTTACTCGGCCACGGCGTGAATCCCGCGGTTTTCGACGTGGACGAGGACGACGAGGCCGCTGTTGTCGTTGAGCTACGTAAGAGGATGACGATCGTTGGAGATGAGAGTGTTATTAACAATTGGCCGCAGTTTCCGGTGGTTTTTGTCGGCGGGAAGTTGTTTGGTGGGTTGGAGAGGGTTATGGCGACGCATATTTCCGGCGAGCTAGTTCCGGTGTTAAAAGAAGCTGGAGCTCTCTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009987 GO:0010033 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

144

Amino Acids

15.41

Weight (kDa)

5.27

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glutaredoxin	PF00462	46 - 116	3.1e-11	Glutaredoxin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28480
fragaria_vesca	FvH4_3g08470
malus_domestica	MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica	Prupe.4G053500_v2.0.a1
pyrus_communis	pycom10g24110
rosa_chinensis	RchiOBHm_Chr5g0009361
rosa_laevigata	RLG00000031655
rosa_multiflora	Rmu_sc0002711.1_g000021
rosa_roxburghii	Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa	Rorug04G0442000
rosa_samantha	Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana	Rw5G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	92
AccII	CGCG	3 cut(s)	156, 184, 215
AciI	CCGC	8 cut(s)	134, 156, 184, 213, 215, 246, 314, 339
AclWI	GGATC	1 cut(s)	28
AcoI	YGGCCR	2 cut(s)	196, 311
AcvI	CACGTG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	29
AdeI	CACNNNGTG	2 cut(s)	178, 205
AgsI	TTSAA	1 cut(s)	113
AjiI	CACGTC	1 cut(s)	226
AluBI	AGCT	6 cut(s)	104, 118, 262, 394, 416, 422
AluI	AGCT	6 cut(s)	104, 118, 262, 394, 416, 422
Alw21I	GWGCWC	1 cut(s)	424
AlwI	GGATC	1 cut(s)	28
AoxI	GGCC	3 cut(s)	196, 243, 311
ApeKI	GCWGC	4 cut(s)	46, 101, 159, 162
AspLEI	GCGC	3 cut(s)	31, 46, 156
AsuC2I	CCSGG	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	424
BbrPI	CACGTG	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	4 cut(s)	33, 113, 146, 149
BceAI	ACGGC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	41
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	2 cut(s)	32, 47
BisI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
BlsI	GCNGC	7 cut(s)	48, 103, 158, 161, 164, 247, 315
Bme1390I	CCNGG	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	1 cut(s)	41
BmsI	GCATC	1 cut(s)	25
BpuMI	CCSGG	1 cut(s)	41
BsaAI	YACGTR	2 cut(s)	175, 266
BsaBI	GATNNNNATC	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	39, 199, 213
BsaWI	WCCGGW	2 cut(s)	322, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse8I	GATNNNNATC	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	39, 199, 213
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	80
BseXI	GCAGC	4 cut(s)	33, 113, 146, 149
BsgI	GTGCAG	1 cut(s)	32
Bsh1236I	CGCG	3 cut(s)	156, 184, 215
Bsh1285I	CGRYCG	2 cut(s)	99, 282
BshFI	GGCC	3 cut(s)	198, 245, 313
BshNI	GGYRCC	1 cut(s)	28
BsiEI	CGRYCG	2 cut(s)	99, 282
BsiHKAI	GWGCWC	1 cut(s)	424
BsiSI	CCGG	4 cut(s)	41, 323, 387, 401
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	198, 245, 313
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	20, 279
BspACI	CCGC	8 cut(s)	134, 156, 184, 213, 215, 246, 314, 339
BspANI	GGCC	3 cut(s)	198, 245, 313
BspFNI	CGCG	3 cut(s)	156, 184, 215
BspLI	GGNNCC	1 cut(s)	30
BspPI	GGATC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	28
BssECI	CCNNGG	3 cut(s)	39, 199, 213
BssMI	GATC	2 cut(s)	20, 279
BssNI	GRCGYC	1 cut(s)	29
Bst4CI	ACNGT	2 cut(s)	97, 109
BstACI	GRCGYC	1 cut(s)	29
BstBAI	YACGTR	2 cut(s)	175, 266
BstC8I	GCNNGC	2 cut(s)	6, 392
BstDSI	CCRYGG	2 cut(s)	199, 213
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	3 cut(s)	156, 184, 215
BstH2I	RGCGCY	2 cut(s)	32, 47
BstHHI	GCGC	3 cut(s)	31, 46, 156
BstKTI	GATC	2 cut(s)	23, 282
BstMBI	GATC	2 cut(s)	20, 279
BstMCI	CGRYCG	2 cut(s)	99, 282
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 162, 168
BstSCI	CCNGG	1 cut(s)	39
BstSNI	TACGTA	1 cut(s)	266
BstUI	CGCG	3 cut(s)	156, 184, 215
BstV1I	GCAGC	4 cut(s)	33, 113, 146, 149
BsuRI	GGCC	3 cut(s)	198, 245, 313
BtgI	CCRYGG	2 cut(s)	199, 213
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	2 cut(s)	6, 392
CfoI	GCGC	3 cut(s)	31, 46, 156
Cfr42I	CCGCGG	1 cut(s)	216
CseI	GACGC	2 cut(s)	190, 385
CviAII	CATG	1 cut(s)	166
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	2 cut(s)	22, 281
DpnII	GATC	2 cut(s)	20, 279
DraIII	CACNNNGTG	2 cut(s)	178, 205
EaeI	YGGCCR	2 cut(s)	196, 311
Ecl136II	GAGCTC	1 cut(s)	422
Eco105I	TACGTA	1 cut(s)	266
Eco24I	GRGCYC	1 cut(s)	424
Eco53kI	GAGCTC	1 cut(s)	422
Eco72I	CACGTG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	422
EcoT38I	GRGCYC	1 cut(s)	424
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
FaeI	CATG	1 cut(s)	169
FaiI	YATR	4 cut(s)	16, 167, 371, 381
FatI	CATG	1 cut(s)	165
FauI	CCCGC	2 cut(s)	220, 332
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	3 cut(s)	30, 45, 155
GluI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
HaeII	RGCGCY	2 cut(s)	32, 47
HaeIII	GGCC	3 cut(s)	198, 245, 313
HapII	CCGG	4 cut(s)	41, 323, 387, 401
HgaI	GACGC	2 cut(s)	190, 385
HhaI	GCGC	3 cut(s)	31, 46, 156
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	3 cut(s)	29, 44, 154
HinP1I	GCGC	3 cut(s)	29, 44, 154
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	208
HpaII	CCGG	4 cut(s)	41, 323, 387, 401
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	2 cut(s)	93, 229
Hpy188I	TCNGA	1 cut(s)	127
Hpy8I	GTNNAC	2 cut(s)	93, 229
Hpy99I	CGWCG	5 cut(s)	97, 146, 227, 242, 379
HpyCH4III	ACNGT	2 cut(s)	97, 109
HpyCH4IV	ACGT	4 cut(s)	51, 174, 225, 265
HpyCH4V	TGCA	3 cut(s)	4, 49, 165
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 162, 168
HpySE526I	ACGT	4 cut(s)	51, 174, 225, 265
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	3 cut(s)	29, 44, 154
KasI	GGCGCC	1 cut(s)	28
KspI	CCGCGG	1 cut(s)	216
Kzo9I	GATC	2 cut(s)	20, 279
LmnI	GCTCC	1 cut(s)	419
LpnPI	CCDG	8 cut(s)	45, 54, 104, 336, 400, 402, 412, 414
Lsp1109I	GCAGC	4 cut(s)	33, 113, 146, 149
LweI	GCATC	1 cut(s)	25
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	4 cut(s)	51, 174, 225, 265
MaeIII	GTNAC	2 cut(s)	178, 189
MalI	GATC	2 cut(s)	22, 281
MboI	GATC	2 cut(s)	20, 279
MboII	GAAGA	1 cut(s)	72
MfeI	CAATTG	1 cut(s)	307
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	2 cut(s)	9, 307
Mly113I	GGCGCC	1 cut(s)	29
MmeI	TCCRAC	2 cut(s)	265, 339
MnlI	CCTC	7 cut(s)	58, 61, 144, 226, 235, 264, 357
MseI	TTAA	2 cut(s)	303, 407
MspA1I	CMGCKG	2 cut(s)	215, 248
MspI	CCGG	4 cut(s)	41, 323, 387, 401
MspR9I	CCNGG	1 cut(s)	41
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	136
MvnI	CGCG	3 cut(s)	156, 184, 215
MwoI	GCNNNNNNNGC	3 cut(s)	35, 162, 168
NarI	GGCGCC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	41
NdeII	GATC	2 cut(s)	20, 279
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	1 cut(s)	30
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	4 cut(s)	105, 201, 228, 237
PctI	GAATGC	1 cut(s)	136
PfeI	GAWTC	1 cut(s)	208
PkrI	GCNGC	7 cut(s)	48, 103, 158, 161, 164, 247, 315
Ple19I	CGATCG	1 cut(s)	282
PluTI	GGCGCC	1 cut(s)	32
PmaCI	CACGTG	1 cut(s)	175
PmlI	CACGTG	1 cut(s)	175
Ppu21I	YACGTR	2 cut(s)	175, 266
Psp124BI	GAGCTC	1 cut(s)	424
PspCI	CACGTG	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	30
PvuI	CGATCG	1 cut(s)	282
SacI	GAGCTC	1 cut(s)	424
SacII	CCGCGG	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	303, 407
SatI	GCNGC	7 cut(s)	47, 102, 157, 160, 163, 246, 314
Sau3AI	GATC	2 cut(s)	20, 279
ScrFI	CCNGG	1 cut(s)	41
SduI	GDGCHC	1 cut(s)	424
SfaNI	GCATC	1 cut(s)	25
SfoI	GGCGCC	1 cut(s)	30
Sfr303I	CCGCGG	1 cut(s)	216
SgrBI	CCGCGG	1 cut(s)	216
SnaBI	TACGTA	1 cut(s)	266
Sse9I	AATT	2 cut(s)	9, 307
SsiI	CCGC	8 cut(s)	134, 156, 184, 213, 215, 246, 314, 339
SspDI	GGCGCC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	424
StyD4I	CCNGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	97, 109
TaiI	ACGT	4 cut(s)	54, 177, 228, 268
TaqI	TCGA	3 cut(s)	56, 92, 222
TasI	AATT	2 cut(s)	9, 307
TauI	GCSGC	3 cut(s)	159, 248, 316
TfiI	GAWTC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	303, 407
Tru9I	TTAA	2 cut(s)	303, 407
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	4 cut(s)	46, 101, 159, 162
Tsp45I	GTSAC	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	33
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	92
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.