Rh5AG072900

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0015234
Physical Location & Seq
Reverse (-)
6236259 .. 6238047
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG072900.1

Sequence Viewer

Length: 315 bp
ATGCAAGCAATTCCATACGGATCGTGGGCGCCAGATGCCCCGGCGCTGCACGTGTCGAGACGGGAGGAGGTTTCTCCCGTGTCGACGGTCGCCGCTACCGTTCAAAAGCTGGTATCGGAGAATGCGGTTATAGTCGTTGGGAGGCGTGGCTGCTGCATGAGCCACGTGGTGACGCGGTTGTTACTCGGCCACGGCGTGAATCCCGCGGTTTTCGACGTGGACGAGGACGACGAGGCCGCTGTTGTCGTTGAGCTACGACCAAGCTTAAAAATTGAAGCCGTAAGATTTATTTATGTCTTTCATCTAATTGTTTAG

Protein Analysis

104

Amino Acids

11.32

Weight (kDa)

5.72

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28480
fragaria_vesca FvH4_3g08470
malus_domestica MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica Prupe.4G053500_v2.0.a1
pyrus_communis pycom10g24110
rosa_chinensis RchiOBHm_Chr5g0009361
rosa_laevigata RLG00000031655
rosa_multiflora Rmu_sc0002711.1_g000021
rosa_roxburghii Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa Rorug04G0442000
rosa_samantha Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana Rw5G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 83
AccII CGCG 2 cut(s) 175, 206
AciI CCGC 6 cut(s) 93, 125, 175, 204, 206, 237
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 1 cut(s) 187
AcvI CACGTG 2 cut(s) 52, 166
AcyI GRCGYC 1 cut(s) 29
AdeI CACNNNGTG 2 cut(s) 169, 196
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 2 cut(s) 104, 275
AjiI CACGTC 1 cut(s) 217
AluBI AGCT 3 cut(s) 109, 253, 264
AluI AGCT 3 cut(s) 109, 253, 264
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 28
AoxI GGCC 2 cut(s) 187, 234
ApeKI GCWGC 3 cut(s) 46, 150, 153
AspLEI GCGC 2 cut(s) 31, 46
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 181
BanI GGYRCC 1 cut(s) 28
BbrPI CACGTG 2 cut(s) 52, 166
BbvI GCAGC 3 cut(s) 33, 137, 140
BceAI ACGGC 2 cut(s) 208, 263
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 52
BfoI RGCGCY 2 cut(s) 32, 47
BisI GCNGC 5 cut(s) 47, 93, 151, 154, 237
BlsI GCNGC 5 cut(s) 48, 94, 152, 155, 238
Bme1390I CCNGG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 41
BsaAI YACGTR 2 cut(s) 52, 166
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 39, 190, 204
BseDI CCNNGG 3 cut(s) 39, 190, 204
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 33, 137, 140
BsgI GTGCAG 1 cut(s) 32
Bsh1236I CGCG 2 cut(s) 175, 206
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 2 cut(s) 189, 236
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 1 cut(s) 90
BsiSI CCGG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 2 cut(s) 189, 236
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 6 cut(s) 93, 125, 175, 204, 206, 237
BspANI GGCC 2 cut(s) 189, 236
BspFNI CGCG 2 cut(s) 175, 206
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 39, 190, 204
BssMI GATC 1 cut(s) 20
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 88, 100
BstACI GRCGYC 1 cut(s) 29
BstBAI YACGTR 2 cut(s) 52, 166
BstC8I GCNNGC 1 cut(s) 6
BstDSI CCRYGG 2 cut(s) 190, 204
BstFNI CGCG 2 cut(s) 175, 206
BstH2I RGCGCY 2 cut(s) 32, 47
BstHHI GCGC 2 cut(s) 31, 46
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 1 cut(s) 20
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 35, 159
BstSCI CCNGG 1 cut(s) 39
BstUI CGCG 2 cut(s) 175, 206
BstV1I GCAGC 3 cut(s) 33, 137, 140
BsuRI GGCC 2 cut(s) 189, 236
BtgI CCRYGG 2 cut(s) 190, 204
BtrI CACGTC 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 31, 46
Cfr42I CCGCGG 1 cut(s) 207
CseI GACGC 1 cut(s) 181
CviAII CATG 1 cut(s) 157
CviJI RGCY 8 cut(s) 109, 150, 162, 189, 236, 253, 264, 278
CviKI_1 RGCY 8 cut(s) 109, 150, 162, 189, 236, 253, 264, 278
DinI GGCGCC 1 cut(s) 30
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
DraIII CACNNNGTG 2 cut(s) 169, 196
EaeI YGGCCR 1 cut(s) 187
Eco72I CACGTG 2 cut(s) 52, 166
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 16, 131, 158, 294
FatI CATG 1 cut(s) 156
FauI CCCGC 1 cut(s) 211
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 5 cut(s) 47, 93, 151, 154, 237
Fsp4HI GCNGC 5 cut(s) 47, 93, 151, 154, 237
GlaI GCGC 2 cut(s) 30, 45
GluI GCNGC 5 cut(s) 47, 93, 151, 154, 237
HaeII RGCGCY 2 cut(s) 32, 47
HaeIII GGCC 2 cut(s) 189, 236
HapII CCGG 1 cut(s) 41
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 31, 46
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 29, 44
HinP1I GCGC 2 cut(s) 29, 44
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 1 cut(s) 199
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 84, 220
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 57
Hpy8I GTNNAC 2 cut(s) 84, 220
Hpy99I CGWCG 3 cut(s) 88, 218, 233
HpyCH4III ACNGT 2 cut(s) 88, 100
HpyCH4IV ACGT 3 cut(s) 51, 165, 216
HpyCH4V TGCA 3 cut(s) 4, 49, 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 159
HpySE526I ACGT 3 cut(s) 51, 165, 216
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 29, 44
KasI GGCGCC 1 cut(s) 28
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 1 cut(s) 20
LpnPI CCDG 3 cut(s) 45, 54, 95
Lsp1109I GCAGC 3 cut(s) 33, 137, 140
LweI GCATC 1 cut(s) 25
MaeII ACGT 3 cut(s) 51, 165, 216
MaeIII GTNAC 2 cut(s) 169, 180
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MluCI AATT 3 cut(s) 9, 270, 306
Mly113I GGCGCC 1 cut(s) 29
MnlI CCTC 5 cut(s) 58, 61, 135, 217, 226
MseI TTAA 1 cut(s) 266
MspA1I CMGCKG 2 cut(s) 206, 239
MspI CCGG 1 cut(s) 41
MspR9I CCNGG 1 cut(s) 41
Mva1269I GAATGC 1 cut(s) 127
MvnI CGCG 2 cut(s) 175, 206
MwoI GCNNNNNNNGC 2 cut(s) 35, 159
NarI GGCGCC 1 cut(s) 29
NciI CCSGG 1 cut(s) 41
NdeII GATC 1 cut(s) 20
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 192, 219, 228
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 5 cut(s) 48, 94, 152, 155, 238
PluTI GGCGCC 1 cut(s) 32
PmaCI CACGTG 2 cut(s) 52, 166
PmlI CACGTG 2 cut(s) 52, 166
Ppu21I YACGTR 2 cut(s) 52, 166
PspCI CACGTG 2 cut(s) 52, 166
PspN4I GGNNCC 1 cut(s) 30
SacII CCGCGG 1 cut(s) 207
SalI GTCGAC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 5 cut(s) 47, 93, 151, 154, 237
Sau3AI GATC 1 cut(s) 20
ScrFI CCNGG 1 cut(s) 41
SetI ASST 7 cut(s) 54, 72, 111, 168, 219, 255, 266
SfaNI GCATC 1 cut(s) 25
SfoI GGCGCC 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
Sse9I AATT 3 cut(s) 9, 270, 306
SsiI CCGC 6 cut(s) 93, 125, 175, 204, 206, 237
SspDI GGCGCC 1 cut(s) 28
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 88, 100
TaiI ACGT 3 cut(s) 54, 168, 219
TaqI TCGA 3 cut(s) 56, 83, 213
TasI AATT 3 cut(s) 9, 270, 306
TauI GCSGC 2 cut(s) 95, 239
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 3 cut(s) 46, 150, 153
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 290
TspGWI ACGGA 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.