Rw5G006810

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0015234
Physical Location & Seq
Reverse (-)
7045138 .. 7046426
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G006810.1

Sequence Viewer

Length: 426 bp
ATGCAAGCAATTCCATACGGATCGTGGGCGCCAGATGCCCCGGCGCTGCACGTGTCGAGACGGGAGGAGGTTTCTCCCGTGTCGACGGTCGCCGCTACCGTTCAAAAGCTGGTATCGGAGAATGCGGTTATAGTCGTTGGGAGGCGTGGCTGCTGCATGAGCCACGTGGTGACGCGGTTGTTACTCGGCCACGGCGTGAATCCCGCGGTTTTCGACGTGGACGAGGACGACGAGGCCGCTGTTGTCGTTGAGCTACGTAAGAGGATGACGATCGTTGGAGATGAGAGTGTTATTAACAATTGGCCGCAGTTTCCGGTGGTTTTTGTCGGCGGGAAGTTGTTTGGTGGGTTGGAGAGGGTTATGGCGACGCATATTTCCGGCGAGCTAGTTCCGGTGTTAAAAGAAGCTGGAGCTCTCTGGCTTTGA

Protein Analysis

141

Amino Acids

15.18

Weight (kDa)

5.5

Isoelectric Point (pI)

46.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 43 - 113 3e-11 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28480
fragaria_vesca FvH4_3g08470
malus_domestica MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica Prupe.4G053500_v2.0.a1
pyrus_communis pycom10g24110
rosa_chinensis RchiOBHm_Chr5g0009361
rosa_laevigata RLG00000031655
rosa_multiflora Rmu_sc0002711.1_g000021
rosa_roxburghii Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa Rorug04G0442000
rosa_samantha Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana Rw5G006810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 28
AccI GTMKAC 1 cut(s) 83
AccII CGCG 2 cut(s) 175, 206
AciI CCGC 8 cut(s) 93, 125, 175, 204, 206, 237, 305, 330
AclWI GGATC 1 cut(s) 28
AcoI YGGCCR 2 cut(s) 187, 302
AcvI CACGTG 2 cut(s) 52, 166
AcyI GRCGYC 1 cut(s) 29
AdeI CACNNNGTG 2 cut(s) 169, 196
AflIII ACRYGT 1 cut(s) 51
AgsI TTSAA 1 cut(s) 104
AjiI CACGTC 1 cut(s) 217
AluBI AGCT 5 cut(s) 109, 253, 385, 407, 413
AluI AGCT 5 cut(s) 109, 253, 385, 407, 413
Alw21I GWGCWC 1 cut(s) 415
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 28
AoxI GGCC 3 cut(s) 187, 234, 302
ApeKI GCWGC 3 cut(s) 46, 150, 153
AspLEI GCGC 2 cut(s) 31, 46
AsuC2I CCSGG 1 cut(s) 41
AsuHPI GGTGA 1 cut(s) 181
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 415
BbrPI CACGTG 2 cut(s) 52, 166
Bbv12I GWGCWC 1 cut(s) 415
BbvI GCAGC 3 cut(s) 33, 137, 140
BceAI ACGGC 1 cut(s) 208
BcnI CCSGG 1 cut(s) 41
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 1 cut(s) 386
BfoI RGCGCY 2 cut(s) 32, 47
BisI GCNGC 6 cut(s) 47, 93, 151, 154, 237, 305
BlsI GCNGC 6 cut(s) 48, 94, 152, 155, 238, 306
Bme1390I CCNGG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 41
BmsI GCATC 1 cut(s) 25
BpuMI CCSGG 1 cut(s) 41
BsaAI YACGTR 3 cut(s) 52, 166, 257
BsaBI GATNNNNATC 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 39, 190, 204
BsaWI WCCGGW 2 cut(s) 313, 391
Bse8I GATNNNNATC 1 cut(s) 269
BseDI CCNNGG 3 cut(s) 39, 190, 204
BseGI GGATG 1 cut(s) 270
BseJI GATNNNNATC 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 80
BseXI GCAGC 3 cut(s) 33, 137, 140
BsgI GTGCAG 1 cut(s) 32
Bsh1236I CGCG 2 cut(s) 175, 206
Bsh1285I CGRYCG 2 cut(s) 90, 273
BshFI GGCC 3 cut(s) 189, 236, 304
BshNI GGYRCC 1 cut(s) 28
BsiEI CGRYCG 2 cut(s) 90, 273
BsiHKAI GWGCWC 1 cut(s) 415
BsiSI CCGG 4 cut(s) 41, 314, 378, 392
BsmAI GTCTC 1 cut(s) 52
BsmBI CGTCTC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 3 cut(s) 189, 236, 304
Bsp1286I GDGCHC 1 cut(s) 415
Bsp143I GATC 2 cut(s) 20, 270
BspACI CCGC 8 cut(s) 93, 125, 175, 204, 206, 237, 305, 330
BspANI GGCC 3 cut(s) 189, 236, 304
BspFNI CGCG 2 cut(s) 175, 206
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 28
BspT107I GGYRCC 1 cut(s) 28
BssECI CCNNGG 3 cut(s) 39, 190, 204
BssMI GATC 2 cut(s) 20, 270
BssNI GRCGYC 1 cut(s) 29
Bst4CI ACNGT 2 cut(s) 88, 100
BstACI GRCGYC 1 cut(s) 29
BstBAI YACGTR 3 cut(s) 52, 166, 257
BstC8I GCNNGC 2 cut(s) 6, 383
BstDSI CCRYGG 2 cut(s) 190, 204
BstF5I GGATG 1 cut(s) 270
BstFNI CGCG 2 cut(s) 175, 206
BstH2I RGCGCY 2 cut(s) 32, 47
BstHHI GCGC 2 cut(s) 31, 46
BstKTI GATC 2 cut(s) 23, 273
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 2 cut(s) 20, 270
BstMCI CGRYCG 2 cut(s) 90, 273
BstMWI GCNNNNNNNGC 2 cut(s) 35, 159
BstSCI CCNGG 1 cut(s) 39
BstSNI TACGTA 1 cut(s) 257
BstUI CGCG 2 cut(s) 175, 206
BstV1I GCAGC 3 cut(s) 33, 137, 140
BsuRI GGCC 3 cut(s) 189, 236, 304
BtgI CCRYGG 2 cut(s) 190, 204
BtrI CACGTC 1 cut(s) 217
BtsCI GGATG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 6, 383
CfoI GCGC 2 cut(s) 31, 46
Cfr42I CCGCGG 1 cut(s) 207
CseI GACGC 2 cut(s) 181, 376
CviAII CATG 1 cut(s) 157
DinI GGCGCC 1 cut(s) 30
DpnI GATC 2 cut(s) 22, 272
DpnII GATC 2 cut(s) 20, 270
DraIII CACNNNGTG 2 cut(s) 169, 196
EaeI YGGCCR 2 cut(s) 187, 302
Ecl136II GAGCTC 1 cut(s) 413
Eco105I TACGTA 1 cut(s) 257
Eco24I GRGCYC 1 cut(s) 415
Eco53kI GAGCTC 1 cut(s) 413
Eco72I CACGTG 2 cut(s) 52, 166
EcoICRI GAGCTC 1 cut(s) 413
EcoT38I GRGCYC 1 cut(s) 415
EgeI GGCGCC 1 cut(s) 30
EheI GGCGCC 1 cut(s) 30
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 1 cut(s) 160
FaiI YATR 5 cut(s) 16, 131, 158, 362, 372
FatI CATG 1 cut(s) 156
FauI CCCGC 2 cut(s) 211, 323
FblI GTMKAC 1 cut(s) 83
Fnu4HI GCNGC 6 cut(s) 47, 93, 151, 154, 237, 305
FokI GGATG 1 cut(s) 277
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 6 cut(s) 47, 93, 151, 154, 237, 305
FspBI CTAG 1 cut(s) 386
GlaI GCGC 2 cut(s) 30, 45
GluI GCNGC 6 cut(s) 47, 93, 151, 154, 237, 305
HaeII RGCGCY 2 cut(s) 32, 47
HaeIII GGCC 3 cut(s) 189, 236, 304
HapII CCGG 4 cut(s) 41, 314, 378, 392
HgaI GACGC 2 cut(s) 181, 376
HhaI GCGC 2 cut(s) 31, 46
Hin1I GRCGYC 1 cut(s) 29
Hin1II CATG 1 cut(s) 160
Hin6I GCGC 2 cut(s) 29, 44
HinP1I GCGC 2 cut(s) 29, 44
HincII GTYRAC 1 cut(s) 84
HindII GTYRAC 1 cut(s) 84
HinfI GANTC 1 cut(s) 199
HpaII CCGG 4 cut(s) 41, 314, 378, 392
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 84, 220
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 1 cut(s) 57
Hpy8I GTNNAC 2 cut(s) 84, 220
Hpy99I CGWCG 4 cut(s) 88, 218, 233, 370
HpyCH4III ACNGT 2 cut(s) 88, 100
HpyCH4IV ACGT 4 cut(s) 51, 165, 216, 256
HpyCH4V TGCA 3 cut(s) 4, 49, 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 159
HpySE526I ACGT 4 cut(s) 51, 165, 216, 256
Hsp92I GRCGYC 1 cut(s) 29
Hsp92II CATG 1 cut(s) 160
HspAI GCGC 2 cut(s) 29, 44
KasI GGCGCC 1 cut(s) 28
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 2 cut(s) 20, 270
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 8 cut(s) 45, 54, 95, 327, 391, 393, 403, 405
Lsp1109I GCAGC 3 cut(s) 33, 137, 140
LweI GCATC 1 cut(s) 25
MaeI CTAG 1 cut(s) 386
MaeII ACGT 4 cut(s) 51, 165, 216, 256
MaeIII GTNAC 2 cut(s) 169, 180
MalI GATC 2 cut(s) 22, 272
MboI GATC 2 cut(s) 20, 270
MfeI CAATTG 1 cut(s) 298
MhlI GDGCHC 1 cut(s) 415
MluCI AATT 2 cut(s) 9, 298
Mly113I GGCGCC 1 cut(s) 29
MmeI TCCRAC 2 cut(s) 256, 330
MnlI CCTC 7 cut(s) 58, 61, 135, 217, 226, 255, 348
MseI TTAA 2 cut(s) 294, 398
MspA1I CMGCKG 2 cut(s) 206, 239
MspI CCGG 4 cut(s) 41, 314, 378, 392
MspR9I CCNGG 1 cut(s) 41
MunI CAATTG 1 cut(s) 298
Mva1269I GAATGC 1 cut(s) 127
MvnI CGCG 2 cut(s) 175, 206
MwoI GCNNNNNNNGC 2 cut(s) 35, 159
NarI GGCGCC 1 cut(s) 29
NciI CCSGG 1 cut(s) 41
NdeII GATC 2 cut(s) 20, 270
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 30
NmeAIII GCCGAG 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 169
PcsI WCGNNNNNNNCGW 4 cut(s) 96, 192, 219, 228
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 199
PkrI GCNGC 6 cut(s) 48, 94, 152, 155, 238, 306
Ple19I CGATCG 1 cut(s) 273
PluTI GGCGCC 1 cut(s) 32
PmaCI CACGTG 2 cut(s) 52, 166
PmlI CACGTG 2 cut(s) 52, 166
Ppu21I YACGTR 3 cut(s) 52, 166, 257
Psp124BI GAGCTC 1 cut(s) 415
PspCI CACGTG 2 cut(s) 52, 166
PspN4I GGNNCC 1 cut(s) 30
PvuI CGATCG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 415
SacII CCGCGG 1 cut(s) 207
SalI GTCGAC 1 cut(s) 82
SaqAI TTAA 2 cut(s) 294, 398
SatI GCNGC 6 cut(s) 47, 93, 151, 154, 237, 305
Sau3AI GATC 2 cut(s) 20, 270
ScrFI CCNGG 1 cut(s) 41
SduI GDGCHC 1 cut(s) 415
SfaNI GCATC 1 cut(s) 25
SfoI GGCGCC 1 cut(s) 30
Sfr303I CCGCGG 1 cut(s) 207
SgrBI CCGCGG 1 cut(s) 207
SnaBI TACGTA 1 cut(s) 257
Sse9I AATT 2 cut(s) 9, 298
SsiI CCGC 8 cut(s) 93, 125, 175, 204, 206, 237, 305, 330
SspDI GGCGCC 1 cut(s) 28
SspMI CTAG 1 cut(s) 386
SstI GAGCTC 1 cut(s) 415
StyD4I CCNGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 88, 100
TaiI ACGT 4 cut(s) 54, 168, 219, 259
TaqI TCGA 3 cut(s) 56, 83, 213
TasI AATT 2 cut(s) 9, 298
TauI GCSGC 3 cut(s) 95, 239, 307
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 2 cut(s) 294, 398
Tru9I TTAA 2 cut(s) 294, 398
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 3 cut(s) 46, 150, 153
Tsp45I GTSAC 1 cut(s) 169
TspGWI ACGGA 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 83
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.