Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0015234

Physical Location & Seq

Genomic Coordinates Reverse (-)

2588474 .. 2588934

Gene Structure 461 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G053500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCAGTCACAAGCTATTCCCTACGGAGCATGGGTTCCGGGCACTCCAGCCGGCCACGTGTCGTCATCGGCACGTGATCAGCAAGCTGCCGCCGTGGGCAGCAGATCGGCAGCTAGCGTACAAAAACTAGTGTCAGAGAATGCCGTTACGGTTGTCGGACGGCGTGGCTGCTGCATGTGCCACGTCGTCAAGCGGCTGCTGCTGGGCCACGGTGTTAACCCCACGGTTTTCGAGGTCGACGAGGACGACGAGAGCGACGTTGTCGTTGAATTGCGGAAATTGATCGGGGAAGGGCAGGAGGATTGGCCGCAGTTTCCTGTCGTGTTTGTGGGCGGGAAGTTGTTTGGTGGGTTGGAGAGAGTTATGGCTACCCATATCTCAGGTGAACTTGTGCCCGTGTTAAAACAAGCCGGAGCTCTGTGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009987 GO:0010033 GO:0014070 GO:0023052 GO:0032870 GO:0035690 GO:0042221 GO:0042493 GO:0046677 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071395 GO:0071407 GO:0071446 GO:0071495 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glutaredoxin

Protein Analysis

143

Amino Acids

15.09

Weight (kDa)

5.75

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28480
fragaria_vesca	FvH4_3g08470
malus_domestica	MD05G1309500.v1.1 MD10G1288100.v1.1
prunus_persica	Prupe.4G053500_v2.0.a1
pyrus_communis	pycom10g24110
rosa_chinensis	RchiOBHm_Chr5g0009361
rosa_laevigata	RLG00000031655
rosa_multiflora	Rmu_sc0002711.1_g000021
rosa_roxburghii	Rroxscaffold_1G00066730 Rroxscaffold_1G00067430
rosa_rugosa	Rorug04G0442000
rosa_samantha	Rh5AG072900 Rh5BG069300 Rh5DG069500
rosa_wichuraiana	Rw5G006810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	237
AciI	CCGC	5 cut(s)	90, 193, 274, 308, 333
AcoI	YGGCCR	2 cut(s)	52, 305
AcvI	CACGTG	2 cut(s)	58, 74
AfaI	GTAC	1 cut(s)	120
AflIII	ACRYGT	1 cut(s)	57
AgsI	TTSAA	1 cut(s)	269
AhlI	ACTAGT	1 cut(s)	127
AjiI	CACGTC	1 cut(s)	184
AloI	GAACNNNNNNTCC	2 cut(s)	18, 50
AluBI	AGCT	4 cut(s)	14, 86, 113, 416
AluI	AGCT	4 cut(s)	14, 86, 113, 416
Alw21I	GWGCWC	1 cut(s)	418
AoxI	GGCC	3 cut(s)	52, 205, 305
ApeKI	GCWGC	7 cut(s)	86, 99, 110, 168, 171, 196, 199
AspS9I	GGNCC	1 cut(s)	205
AsuC2I	CCSGG	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	395
AsuNHI	GCTAGC	1 cut(s)	113
BaeGI	GKGCMC	2 cut(s)	44, 396
BanII	GRGCYC	1 cut(s)	418
BbrPI	CACGTG	2 cut(s)	58, 74
Bbv12I	GWGCWC	1 cut(s)	418
BbvI	GCAGC	7 cut(s)	73, 111, 122, 155, 158, 183, 186
BceAI	ACGGC	3 cut(s)	77, 128, 176
BclI	TGATCA	1 cut(s)	76
BcnI	CCSGG	1 cut(s)	39
BcuI	ACTAGT	1 cut(s)	127
BfaI	CTAG	2 cut(s)	114, 128
Bme1390I	CCNGG	1 cut(s)	39
BmgBI	CACGTC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	205
BmiI	GGNNCC	1 cut(s)	36
BmrFI	CCNGG	1 cut(s)	39
BmtI	GCTAGC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	39
BsaAI	YACGTR	2 cut(s)	58, 74
BsaJI	CCNNGG	3 cut(s)	93, 208, 222
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bse118I	RCCGGY	1 cut(s)	50
BseDI	CCNNGG	3 cut(s)	93, 208, 222
BseMII	CTCAG	1 cut(s)	393
BseSI	GKGCMC	2 cut(s)	44, 396
BseXI	GCAGC	7 cut(s)	73, 111, 122, 155, 158, 183, 186
BseYI	CCCAGC	1 cut(s)	202
BshFI	GGCC	3 cut(s)	54, 207, 307
BsiHKAI	GWGCWC	1 cut(s)	418
BsiSI	CCGG	3 cut(s)	38, 51, 411
BsmI	GAATGC	1 cut(s)	145
BsnI	GGCC	3 cut(s)	54, 207, 307
Bsp1286I	GDGCHC	3 cut(s)	44, 396, 418
Bsp143I	GATC	3 cut(s)	76, 104, 282
BspACI	CCGC	5 cut(s)	90, 193, 274, 308, 333
BspANI	GGCC	3 cut(s)	54, 207, 307
BspCNI	CTCAG	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	36
BspOI	GCTAGC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	3 cut(s)	93, 208, 222
BssMI	GATC	3 cut(s)	76, 104, 282
Bst4CI	ACNGT	3 cut(s)	151, 212, 226
BstBAI	YACGTR	2 cut(s)	58, 74
BstC8I	GCNNGC	3 cut(s)	52, 84, 115
BstDEI	CTNAG	1 cut(s)	379
BstDSI	CCRYGG	3 cut(s)	93, 208, 222
BstKTI	GATC	3 cut(s)	79, 107, 285
BstMBI	GATC	3 cut(s)	76, 104, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 199
BstNSI	RCATGY	1 cut(s)	178
BstSCI	CCNGG	1 cut(s)	37
BstSLI	GKGCMC	2 cut(s)	44, 396
BstV1I	GCAGC	7 cut(s)	73, 111, 122, 155, 158, 183, 186
BsuRI	GGCC	3 cut(s)	54, 207, 307
BtgI	CCRYGG	3 cut(s)	93, 208, 222
BtrI	CACGTC	1 cut(s)	184
Cac8I	GCNNGC	3 cut(s)	52, 84, 115
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	119
CviAII	CATG	2 cut(s)	30, 175
CviQI	GTAC	1 cut(s)	119
DdeI	CTNAG	1 cut(s)	379
DpnI	GATC	3 cut(s)	78, 106, 284
DpnII	GATC	3 cut(s)	76, 104, 282
EaeI	YGGCCR	2 cut(s)	52, 305
Ecl136II	GAGCTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	418
Eco53kI	GAGCTC	1 cut(s)	416
Eco72I	CACGTG	2 cut(s)	58, 74
EcoICRI	GAGCTC	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	2 cut(s)	33, 178
FaiI	YATR	4 cut(s)	31, 176, 365, 375
FatI	CATG	2 cut(s)	29, 174
FauI	CCCGC	1 cut(s)	326
FbaI	TGATCA	1 cut(s)	76
FblI	GTMKAC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	418
FspBI	CTAG	2 cut(s)	114, 128
GsaI	CCCAGC	1 cut(s)	206
GsuI	CTGGAG	1 cut(s)	30
HaeIII	GGCC	3 cut(s)	54, 207, 307
HapII	CCGG	3 cut(s)	38, 51, 411
Hin1II	CATG	2 cut(s)	33, 178
HincII	GTYRAC	2 cut(s)	217, 238
HindII	GTYRAC	2 cut(s)	217, 238
HpaI	GTTAAC	1 cut(s)	217
HpaII	CCGG	3 cut(s)	38, 51, 411
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	217, 238, 386
Hpy188I	TCNGA	2 cut(s)	136, 158
Hpy8I	GTNNAC	3 cut(s)	217, 238, 386
Hpy99I	CGWCG	4 cut(s)	188, 242, 251, 260
HpyAV	CCTTC	1 cut(s)	284
HpyCH4III	ACNGT	3 cut(s)	151, 212, 226
HpyCH4IV	ACGT	4 cut(s)	57, 73, 183, 258
HpyCH4V	TGCA	2 cut(s)	4, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 199
HpyF3I	CTNAG	1 cut(s)	379
HpySE526I	ACGT	4 cut(s)	57, 73, 183, 258
Hsp92II	CATG	2 cut(s)	33, 178
KroI	GCCGGC	1 cut(s)	50
KroNI	GCCGGC	1 cut(s)	52
Ksp22I	TGATCA	1 cut(s)	76
KspAI	GTTAAC	1 cut(s)	217
Kzo9I	GATC	3 cut(s)	76, 104, 282
LmnI	GCTCC	2 cut(s)	26, 413
LpnPI	CCDG	8 cut(s)	51, 60, 64, 188, 281, 330, 366, 424
Lsp1109I	GCAGC	7 cut(s)	73, 111, 122, 155, 158, 183, 186
MaeI	CTAG	2 cut(s)	114, 128
MaeII	ACGT	4 cut(s)	57, 73, 183, 258
MaeIII	GTNAC	2 cut(s)	6, 145
MalI	GATC	3 cut(s)	78, 106, 284
MboI	GATC	3 cut(s)	76, 104, 282
MhlI	GDGCHC	3 cut(s)	44, 396, 418
MluCI	AATT	2 cut(s)	269, 278
MmeI	TCCRAC	2 cut(s)	136, 333
MnlI	CCTC	3 cut(s)	226, 235, 292
MroNI	GCCGGC	1 cut(s)	50
MseI	TTAA	2 cut(s)	216, 401
MspI	CCGG	3 cut(s)	38, 51, 411
MspR9I	CCNGG	1 cut(s)	39
Mva1269I	GAATGC	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	177, 199
NaeI	GCCGGC	1 cut(s)	52
NciI	CCSGG	1 cut(s)	39
NdeII	GATC	3 cut(s)	76, 104, 282
NgoMIV	GCCGGC	1 cut(s)	50
NheI	GCTAGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	33, 178
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	5 cut(s)	237, 243, 246, 252, 255
PctI	GAATGC	1 cut(s)	145
PdiI	GCCGGC	1 cut(s)	52
PflFI	GACNNNGTC	1 cut(s)	260
PmaCI	CACGTG	2 cut(s)	58, 74
PmlI	CACGTG	2 cut(s)	58, 74
Ppu21I	YACGTR	2 cut(s)	58, 74
Psp124BI	GAGCTC	1 cut(s)	418
PspCI	CACGTG	2 cut(s)	58, 74
PspFI	CCCAGC	1 cut(s)	202
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	205
PsyI	GACNNNGTC	1 cut(s)	260
RsaI	GTAC	1 cut(s)	120
RsaNI	GTAC	1 cut(s)	119
SacI	GAGCTC	1 cut(s)	418
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	216, 401
Sau3AI	GATC	3 cut(s)	76, 104, 282
Sau96I	GGNCC	1 cut(s)	205
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	3 cut(s)	44, 396, 418
SpeI	ACTAGT	1 cut(s)	127
Sse9I	AATT	2 cut(s)	269, 278
SsiI	CCGC	5 cut(s)	90, 193, 274, 308, 333
SspMI	CTAG	2 cut(s)	114, 128
SstI	GAGCTC	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	3 cut(s)	151, 212, 226
TaiI	ACGT	4 cut(s)	60, 76, 186, 261
TaqI	TCGA	2 cut(s)	231, 237
TasI	AATT	2 cut(s)	269, 278
TauI	GCSGC	3 cut(s)	92, 196, 310
Tru1I	TTAA	2 cut(s)	216, 401
Tru9I	TTAA	2 cut(s)	216, 401
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	7 cut(s)	86, 99, 110, 168, 171, 196, 199
Tsp45I	GTSAC	1 cut(s)	6
TspGWI	ACGGA	1 cut(s)	39
Tth111I	GACNNNGTC	1 cut(s)	260
XceI	RCATGY	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	237
XspI	CTAG	2 cut(s)	114, 128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.